RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 KNSTRNQ9Y448 316 aa25.6■■□□□ 1.69
PDLIM3-212ENST00000620787 GOLGA2Q08379 1002 aa25.59■■□□□ 1.69
PDLIM3-212ENST00000620787 FAM161AQ3B820 660 aa25.59■■□□□ 1.69
PDLIM3-212ENST00000620787 SPHKAPQ2M3C7 1700 aa25.59■■□□□ 1.69
PDLIM3-212ENST00000620787 NFKBIBQ15653 356 aa25.58■■□□□ 1.68
PDLIM3-212ENST00000620787 ASXL1Q8IXJ9 1541 aa25.57■■□□□ 1.68
PDLIM3-212ENST00000620787 PIK3C2GO75747 1445 aa25.57■■□□□ 1.68
PDLIM3-212ENST00000620787 SLC4A3P48751 1232 aa25.56■■□□□ 1.68
PDLIM3-212ENST00000620787 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.55■■□□□ 1.68
PDLIM3-212ENST00000620787 SLFN5Q08AF3 891 aa25.54■■□□□ 1.68
PDLIM3-212ENST00000620787 CEP152O94986 1710 aa25.54■■□□□ 1.68
PDLIM3-212ENST00000620787 VIRMAQ69YN4 1812 aaKnown RBP25.54■■□□□ 1.68
PDLIM3-212ENST00000620787 GSE1Q14687 1217 aa25.53■■□□□ 1.68
PDLIM3-212ENST00000620787 ABCC2Q92887 1545 aa25.53■■□□□ 1.68
PDLIM3-212ENST00000620787 TRMT2AQ8IZ69 625 aaKnown RBP25.52■■□□□ 1.68
PDLIM3-212ENST00000620787 RTN4Q9NQC3 1192 aaKnown RBP25.52■■□□□ 1.68
PDLIM3-212ENST00000620787 SCAF11Q99590 1463 aaKnown RBP25.51■■□□□ 1.67
PDLIM3-212ENST00000620787 ANO8Q9HCE9 1232 aaPredicted RBP25.5■■□□□ 1.67
PDLIM3-212ENST00000620787 NPC1L1Q9UHC9 1359 aa25.49■■□□□ 1.67
PDLIM3-212ENST00000620787 SCAPERQ9BY12 1400 aa25.49■■□□□ 1.67
PDLIM3-212ENST00000620787 TRPM2O94759 1503 aa25.49■■□□□ 1.67
PDLIM3-212ENST00000620787 DAXXQ9UER7 740 aaPredicted RBP25.49■■□□□ 1.67
PDLIM3-212ENST00000620787 CDCA8Q53HL2 280 aa25.48■■□□□ 1.67
PDLIM3-212ENST00000620787 EIF3AQ14152 1382 aaKnown RBP25.48■■□□□ 1.67
PDLIM3-212ENST00000620787 NKTRP30414 1462 aaKnown RBP25.47■■□□□ 1.67
PDLIM3-212ENST00000620787 KDM5AP29375 1690 aaKnown RBP25.47■■□□□ 1.67
PDLIM3-212ENST00000620787 CCDC146Q8IYE0 955 aa25.45■■□□□ 1.66
PDLIM3-212ENST00000620787 SPINK5Q9NQ38 1064 aaPredicted RBP25.45■■□□□ 1.66
PDLIM3-212ENST00000620787 CLTCL1P53675 1640 aa25.45■■□□□ 1.66
PDLIM3-212ENST00000620787 RGS3P49796 1198 aa25.45■■□□□ 1.66
PDLIM3-212ENST00000620787 SHROOM2Q13796 1616 aa25.42■■□□□ 1.66
PDLIM3-212ENST00000620787 KIAA1210Q9ULL0 1709 aa25.42■■□□□ 1.66
PDLIM3-212ENST00000620787 ABCC1P33527 1531 aa25.42■■□□□ 1.66
PDLIM3-212ENST00000620787 FRAT1Q92837 279 aaPredicted RBP25.42■■□□□ 1.66
PDLIM3-212ENST00000620787 BRPF3Q9ULD4 1205 aa25.42■■□□□ 1.66
PDLIM3-212ENST00000620787 APAF1O14727 1248 aa25.4■■□□□ 1.66
PDLIM3-212ENST00000620787 CHD1O14646 1710 aa25.4■■□□□ 1.66
PDLIM3-212ENST00000620787 BCAR3O75815 825 aa25.4■■□□□ 1.66
PDLIM3-212ENST00000620787 PTPRTO14522 1441 aa25.4■■□□□ 1.66
PDLIM3-212ENST00000620787 PLCH2O75038 1416 aa25.39■■□□□ 1.66
PDLIM3-212ENST00000620787 STAC3Q96MF2 364 aa25.38■■□□□ 1.65
PDLIM3-212ENST00000620787 TRAPPC8Q9Y2L5 1435 aa25.37■■□□□ 1.65
PDLIM3-212ENST00000620787 E9PSI1 815 aa25.37■■□□□ 1.65
PDLIM3-212ENST00000620787 DEPDC5O75140 1603 aa25.36■■□□□ 1.65
PDLIM3-212ENST00000620787 FRAT2O75474 233 aaPredicted RBP25.34■■□□□ 1.65
PDLIM3-212ENST00000620787 TET3O43151 1660 aa25.34■■□□□ 1.65
PDLIM3-212ENST00000620787 IGHDP01880 384 aa25.34■■□□□ 1.65
PDLIM3-212ENST00000620787 DMRT2Q9Y5R5 561 aa25.34■■□□□ 1.65
PDLIM3-212ENST00000620787 ERCC6L2Q5T890 1561 aa25.33■■□□□ 1.65
PDLIM3-212ENST00000620787 USP19O94966 1318 aa25.32■■□□□ 1.64
PDLIM3-212ENST00000620787 ERVK-7P63135 1459 aa25.32■■□□□ 1.64
PDLIM3-212ENST00000620787 EFCAB2Q5VUJ9 269 aa25.31■■□□□ 1.64
PDLIM3-212ENST00000620787 ZFYVE16Q7Z3T8 1539 aa25.31■■□□□ 1.64
PDLIM3-212ENST00000620787 CGNL1Q0VF96 1302 aa25.3■■□□□ 1.64
PDLIM3-212ENST00000620787 ZCCHC11Q5TAX3 1644 aaKnown RBP25.3■■□□□ 1.64
PDLIM3-212ENST00000620787 NGEFQ8N5V2 710 aa25.3■■□□□ 1.64
PDLIM3-212ENST00000620787 PDE3AQ14432 1141 aa25.29■■□□□ 1.64
PDLIM3-212ENST00000620787 ABCA6Q8N139 1617 aa25.29■■□□□ 1.64
PDLIM3-212ENST00000620787 NINLQ9Y2I6 1382 aa25.29■■□□□ 1.64
PDLIM3-212ENST00000620787 NEURL4Q96JN8 1562 aa25.28■■□□□ 1.64
PDLIM3-212ENST00000620787 MAP3K4Q9Y6R4 1608 aa25.28■■□□□ 1.64
PDLIM3-212ENST00000620787 RTEL1-TNFRSF6BF6WH68 1400 aa25.27■■□□□ 1.64
PDLIM3-212ENST00000620787 CARD14Q9BXL6 1004 aa25.26■■□□□ 1.63
PDLIM3-212ENST00000620787 SHPRHQ149N8 1683 aa25.26■■□□□ 1.63
PDLIM3-212ENST00000620787 VWDEQ8N2E2 1590 aa25.25■■□□□ 1.63
PDLIM3-212ENST00000620787 CLUAP1Q96AJ1 413 aa25.25■■□□□ 1.63
PDLIM3-212ENST00000620787 CENPJQ9HC77 1338 aaPredicted RBP25.25■■□□□ 1.63
PDLIM3-212ENST00000620787 SPAG9O60271 1321 aaKnown RBP25.24■■□□□ 1.63
PDLIM3-212ENST00000620787 MAPK8IP3Q9UPT6 1336 aa25.24■■□□□ 1.63
PDLIM3-212ENST00000620787 NLRP1Q9C000 1473 aa25.24■■□□□ 1.63
PDLIM3-212ENST00000620787 MYOM2P54296 1465 aa25.23■■□□□ 1.63
PDLIM3-212ENST00000620787 IFT172Q9UG01 1749 aa25.23■■□□□ 1.63
PDLIM3-212ENST00000620787 MYO3AQ8NEV4 1616 aa25.23■■□□□ 1.63
PDLIM3-212ENST00000620787 POLR3AO14802 1390 aaPredicted RBP25.22■■□□□ 1.63
PDLIM3-212ENST00000620787 SEC24BO95487 1268 aa25.22■■□□□ 1.63
PDLIM3-212ENST00000620787 PRKCSHP14314 528 aaPredicted RBP25.22■■□□□ 1.63
PDLIM3-212ENST00000620787 PANK1Q8TE04 598 aa25.22■■□□□ 1.63
PDLIM3-212ENST00000620787 WWC1Q8IX03 1113 aa25.22■■□□□ 1.63
PDLIM3-212ENST00000620787 COG6Q9Y2V7 657 aa25.21■■□□□ 1.63
PDLIM3-212ENST00000620787 SLC24A1O60721 1099 aa25.19■■□□□ 1.62
PDLIM3-212ENST00000620787 CFAP70Q5T0N1 1121 aa25.19■■□□□ 1.62
PDLIM3-212ENST00000620787 KIF1BO60333 1816 aa25.19■■□□□ 1.62
PDLIM3-212ENST00000620787 CANXP27824 592 aaKnown RBP25.18■■□□□ 1.62
PDLIM3-212ENST00000620787 AFAP1Q8N556 730 aa25.18■■□□□ 1.62
PDLIM3-212ENST00000620787 UGGT1Q9NYU2 1555 aa25.18■■□□□ 1.62
PDLIM3-212ENST00000620787 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.17■■□□□ 1.62
PDLIM3-212ENST00000620787 ARAP3Q8WWN8 1544 aa25.17■■□□□ 1.62
PDLIM3-212ENST00000620787 INO80Q9ULG1 1556 aaPredicted RBP25.16■■□□□ 1.62
PDLIM3-212ENST00000620787 IQSEC2Q5JU85 1478 aa25.16■■□□□ 1.62
PDLIM3-212ENST00000620787 MROH2AA6NES4 1674 aa25.16■■□□□ 1.62
PDLIM3-212ENST00000620787 ADGRF5Q8IZF2 1346 aa25.15■■□□□ 1.62
PDLIM3-212ENST00000620787 KANK1Q14678 1352 aa25.15■■□□□ 1.62
PDLIM3-212ENST00000620787 MROH1Q8NDA8 1641 aa25.14■■□□□ 1.61
PDLIM3-212ENST00000620787 ATP7AQ04656 1500 aa25.13■■□□□ 1.61
PDLIM3-212ENST00000620787 SBNO2Q9Y2G9 1366 aa25.13■■□□□ 1.61
PDLIM3-212ENST00000620787 BECN1Q14457 450 aa25.13■■□□□ 1.61
PDLIM3-212ENST00000620787 UHRF1BP1LA0JNW5 1464 aa25.13■■□□□ 1.61
PDLIM3-212ENST00000620787 ZC3H13Q5T200 1668 aaKnown RBP25.12■■□□□ 1.61
PDLIM3-212ENST00000620787 RARSP54136 660 aaKnown RBP25.12■■□□□ 1.61
PDLIM3-212ENST00000620787 NRXN1Q9ULB1 1477 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms