RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	KIF1B	O60333	1816 aa		13.2	□□□□□ -0.3
SSBP4-208	ENST00000600628	NWD1	Q149M9	1564 aa		13.2	□□□□□ -0.3
SSBP4-208	ENST00000600628	XIRP1	Q702N8	1843 aa	Known RBP	13.19	□□□□□ -0.3
SSBP4-208	ENST00000600628	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.19	□□□□□ -0.3
SSBP4-208	ENST00000600628	STAG3	Q9UJ98	1225 aa		13.19	□□□□□ -0.3
SSBP4-208	ENST00000600628	EID1	Q9Y6B2	187 aa		13.19	□□□□□ -0.3
SSBP4-208	ENST00000600628	NRXN3	Q9Y4C0	1643 aa		13.19	□□□□□ -0.3
SSBP4-208	ENST00000600628	NEXMIF	Q5QGS0	1516 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	CHD2	O14647	1828 aa	Known RBP	13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	ALK	Q9UM73	1620 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	MPHOSPH9	Q99550	1183 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	ADAMTS13	Q76LX8	1427 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	SETBP1	Q9Y6X0	1596 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	LRRC7	Q96NW7	1537 aa		13.18	□□□□□ -0.3
SSBP4-208	ENST00000600628	DIP2A	Q14689	1571 aa		13.16	□□□□□ -0.3
SSBP4-208	ENST00000600628	SPATA31E1	Q6ZUB1	1445 aa		13.16	□□□□□ -0.3
SSBP4-208	ENST00000600628	TRIM52	Q96A61	297 aa		13.16	□□□□□ -0.3
SSBP4-208	ENST00000600628	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
SSBP4-208	ENST00000600628	PPL	O60437	1756 aa		13.15	□□□□□ -0.31
SSBP4-208	ENST00000600628	SETD1A	O15047	1707 aa	Known RBP	13.14	□□□□□ -0.31
SSBP4-208	ENST00000600628	TBX22	Q9Y458	520 aa		13.14	□□□□□ -0.31
SSBP4-208	ENST00000600628	IFT172	Q9UG01	1749 aa		13.13	□□□□□ -0.31
SSBP4-208	ENST00000600628	NKTR	P30414	1462 aa	Known RBP	13.13	□□□□□ -0.31
SSBP4-208	ENST00000600628	PIK3R4	Q99570	1358 aa		13.13	□□□□□ -0.31
SSBP4-208	ENST00000600628	HDGF	P51858	240 aa	Known RBP	13.13	□□□□□ -0.31
SSBP4-208	ENST00000600628	FOXD1	Q16676	465 aa		13.12	□□□□□ -0.31
SSBP4-208	ENST00000600628	ANKRD30B	Q9BXX2	1392 aa		13.11	□□□□□ -0.31
SSBP4-208	ENST00000600628	KCNA6	P17658	529 aa		13.11	□□□□□ -0.31
SSBP4-208	ENST00000600628	SLC26A8	Q96RN1	970 aa		13.11	□□□□□ -0.31
SSBP4-208	ENST00000600628	RPGRIP1L	Q68CZ1	1315 aa		13.11	□□□□□ -0.31
SSBP4-208	ENST00000600628	XRN1	Q8IZH2	1706 aa	Known RBP	13.1	□□□□□ -0.31
SSBP4-208	ENST00000600628	CCDC144A	A2RUR9	1427 aa		13.09	□□□□□ -0.31
SSBP4-208	ENST00000600628	PRAG1	Q86YV5	1406 aa		13.09	□□□□□ -0.31
SSBP4-208	ENST00000600628	PTPRU	Q92729	1446 aa		13.09	□□□□□ -0.31
SSBP4-208	ENST00000600628	UBAP1L	F5GYI3	381 aa		13.08	□□□□□ -0.32
SSBP4-208	ENST00000600628	CHGA	P10645	457 aa	Known RBP	13.08	□□□□□ -0.32
SSBP4-208	ENST00000600628	NCOA3	Q9Y6Q9	1424 aa		13.07	□□□□□ -0.32
SSBP4-208	ENST00000600628	NRXN1	Q9ULB1	1477 aa		13.06	□□□□□ -0.32
SSBP4-208	ENST00000600628	TOM1	O60784	492 aa		13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	PPP1R15A	O75807	674 aa	Predicted RBP	13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	BCAN	Q96GW7	911 aa		13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	MET	P08581	1390 aa		13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	TMEM94	Q12767	1356 aa		13.05	□□□□□ -0.32
SSBP4-208	ENST00000600628	VGF	O15240	615 aa	Predicted RBP	13.04	□□□□□ -0.32
SSBP4-208	ENST00000600628	PIK3C2G	O75747	1445 aa		13.03	□□□□□ -0.32
SSBP4-208	ENST00000600628	ZNF326	Q5BKZ1	582 aa	Known RBP	13.02	□□□□□ -0.33
SSBP4-208	ENST00000600628	MYOM2	P54296	1465 aa		13.02	□□□□□ -0.33
SSBP4-208	ENST00000600628	SENP3	Q9H4L4	574 aa	Predicted RBP	13.01	□□□□□ -0.33
SSBP4-208	ENST00000600628	ASXL1	Q8IXJ9	1541 aa		13	□□□□□ -0.33
SSBP4-208	ENST00000600628	ADGRF5	Q8IZF2	1346 aa		13	□□□□□ -0.33
SSBP4-208	ENST00000600628	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	TECPR2	O15040	1411 aa		12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	PTCH1	Q13635	1447 aa		12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	PIP4K2B	P78356	416 aa		12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	PROSER2	Q86WR7	435 aa	Predicted RBP	12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	AMOTL2	Q9Y2J4	779 aa		12.99	□□□□□ -0.33
SSBP4-208	ENST00000600628	FAM135B	Q49AJ0	1406 aa		12.98	□□□□□ -0.33
SSBP4-208	ENST00000600628	DCC	P43146	1447 aa		12.97	□□□□□ -0.33
SSBP4-208	ENST00000600628	SCAF1	Q9H7N4	1312 aa	Known RBP	12.97	□□□□□ -0.33
SSBP4-208	ENST00000600628	KNDC1	Q76NI1	1749 aa		12.96	□□□□□ -0.33
SSBP4-208	ENST00000600628	DHX57	Q6P158	1386 aa	Known RBP	12.96	□□□□□ -0.33
SSBP4-208	ENST00000600628	LAMC1	P11047	1609 aa		12.96	□□□□□ -0.33
SSBP4-208	ENST00000600628	RGL3	Q3MIN7	710 aa		12.96	□□□□□ -0.33
SSBP4-208	ENST00000600628	NALCN	Q8IZF0	1738 aa		12.96	□□□□□ -0.34
SSBP4-208	ENST00000600628	RBM33	Q96EV2	1170 aa	Known RBP	12.95	□□□□□ -0.34
SSBP4-208	ENST00000600628	STAC3	Q96MF2	364 aa		12.95	□□□□□ -0.34
SSBP4-208	ENST00000600628	ROBO2	Q9HCK4	1378 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	HSPA1L	P34931	641 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	TRIM26	Q12899	539 aa	Predicted RBP	12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	C19orf44	Q9H6X5	657 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	C14orf93	Q9H972	538 aa	Known RBP	12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	ADGRL3	Q9HAR2	1447 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	ADGRB1	O14514	1584 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	MSH6	P52701	1360 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	ABCC11	Q96J66	1382 aa		12.94	□□□□□ -0.34
SSBP4-208	ENST00000600628	ROBO1	Q9Y6N7	1651 aa		12.93	□□□□□ -0.34
SSBP4-208	ENST00000600628	LRPPRC	P42704	1394 aa	Known RBP	12.92	□□□□□ -0.34
SSBP4-208	ENST00000600628	SIRT1	Q96EB6	747 aa		12.9	□□□□□ -0.34
SSBP4-208	ENST00000600628	SLAIN2	Q9P270	581 aa		12.9	□□□□□ -0.34
SSBP4-208	ENST00000600628	KIAA1210	Q9ULL0	1709 aa		12.9	□□□□□ -0.34
SSBP4-208	ENST00000600628	MST1R	Q04912	1400 aa		12.89	□□□□□ -0.35
SSBP4-208	ENST00000600628	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.89	□□□□□ -0.35
SSBP4-208	ENST00000600628	DLC1	Q96QB1	1528 aa		12.89	□□□□□ -0.35
SSBP4-208	ENST00000600628	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.88	□□□□□ -0.35
SSBP4-208	ENST00000600628	CADPS2	Q86UW7	1296 aa		12.88	□□□□□ -0.35
SSBP4-208	ENST00000600628	CDC42BPG	Q6DT37	1551 aa		12.87	□□□□□ -0.35
SSBP4-208	ENST00000600628	COL16A1	Q07092	1604 aa	Predicted RBP	12.87	□□□□□ -0.35
SSBP4-208	ENST00000600628	DISP3	Q9P2K9	1392 aa		12.86	□□□□□ -0.35
SSBP4-208	ENST00000600628	CFAP70	Q5T0N1	1121 aa		12.86	□□□□□ -0.35
SSBP4-208	ENST00000600628	TMEM132E	Q6IEE7	984 aa		12.86	□□□□□ -0.35
SSBP4-208	ENST00000600628	C14orf37	Q86TY3	774 aa		12.86	□□□□□ -0.35
SSBP4-208	ENST00000600628	NHSL1	Q5SYE7	1610 aa		12.86	□□□□□ -0.35
SSBP4-208	ENST00000600628	DCAF11	Q8TEB1	546 aa		12.85	□□□□□ -0.35
SSBP4-208	ENST00000600628	PLEKHH1	Q9ULM0	1364 aa		12.84	□□□□□ -0.35
SSBP4-208	ENST00000600628	C1orf167	Q5SNV9	1468 aa		12.84	□□□□□ -0.35
SSBP4-208	ENST00000600628	PHLPP1	O60346	1717 aa		12.83	□□□□□ -0.36
SSBP4-208	ENST00000600628	ADGRB2	O60241	1585 aa		12.83	□□□□□ -0.36
SSBP4-208	ENST00000600628	BRINP3	Q76B58	766 aa		12.83	□□□□□ -0.36
SSBP4-208	ENST00000600628	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.82	□□□□□ -0.36

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