RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SCAF11Q99590 1463 aaKnown RBP19.78■□□□□ 0.76
VRK3-217ENST00000599538 ADGRB3O60242 1522 aa19.77■□□□□ 0.76
VRK3-217ENST00000599538 NOS1P29475 1434 aa19.76■□□□□ 0.75
VRK3-217ENST00000599538 FKBP8Q14318 412 aa19.75■□□□□ 0.75
VRK3-217ENST00000599538 PANK3Q9H999 370 aa19.75■□□□□ 0.75
VRK3-217ENST00000599538 KIAA1210Q9ULL0 1709 aa19.74■□□□□ 0.75
VRK3-217ENST00000599538 NRXN1Q9ULB1 1477 aa19.72■□□□□ 0.75
VRK3-217ENST00000599538 SYNMO15061 1565 aa19.72■□□□□ 0.75
VRK3-217ENST00000599538 PNISRQ8TF01 805 aaKnown RBP19.72■□□□□ 0.75
VRK3-217ENST00000599538 SENP3-EIF4A1A0A087X0R7 540 aa19.71■□□□□ 0.75
VRK3-217ENST00000599538 TMC1Q8TDI8 760 aa19.71■□□□□ 0.75
VRK3-217ENST00000599538 MYBBP1AQ9BQG0 1328 aaKnown RBP19.71■□□□□ 0.75
VRK3-217ENST00000599538 ZMYM4Q5VZL5 1548 aa19.7■□□□□ 0.74
VRK3-217ENST00000599538 RALBP1Q15311 655 aa19.7■□□□□ 0.74
VRK3-217ENST00000599538 BCANQ96GW7 911 aa19.7■□□□□ 0.74
VRK3-217ENST00000599538 PARD3Q8TEW0 1356 aa19.7■□□□□ 0.74
VRK3-217ENST00000599538 CC2D1BQ5T0F9 858 aaKnown RBP19.69■□□□□ 0.74
VRK3-217ENST00000599538 PPLO60437 1756 aa19.69■□□□□ 0.74
VRK3-217ENST00000599538 ZBED9Q6R2W3 1325 aa19.69■□□□□ 0.74
VRK3-217ENST00000599538 NUTM2DQ5VT03 806 aaPredicted RBP19.69■□□□□ 0.74
VRK3-217ENST00000599538 KTN1Q86UP2 1357 aaKnown RBP19.68■□□□□ 0.74
VRK3-217ENST00000599538 PIK3C2BO00750 1634 aa19.67■□□□□ 0.74
VRK3-217ENST00000599538 ARHGAP31Q2M1Z3 1444 aa19.67■□□□□ 0.74
VRK3-217ENST00000599538 IDI1Q13907 227 aa19.66■□□□□ 0.74
VRK3-217ENST00000599538 BRD4O60885 1362 aaPredicted RBP19.66■□□□□ 0.74
VRK3-217ENST00000599538 PIK3C2GO75747 1445 aa19.65■□□□□ 0.74
VRK3-217ENST00000599538 ZC3H13Q5T200 1668 aaKnown RBP19.65■□□□□ 0.74
VRK3-217ENST00000599538 EIF3AQ14152 1382 aaKnown RBP19.65■□□□□ 0.74
VRK3-217ENST00000599538 TMEM132EQ6IEE7 984 aa19.64■□□□□ 0.73
VRK3-217ENST00000599538 FBXO31Q5XUX0 539 aaPredicted RBP19.63■□□□□ 0.73
VRK3-217ENST00000599538 C14orf93Q9H972 538 aaKnown RBP19.63■□□□□ 0.73
VRK3-217ENST00000599538 KIF13AQ9H1H9 1805 aa19.63■□□□□ 0.73
VRK3-217ENST00000599538 LRPPRCP42704 1394 aaKnown RBP19.62■□□□□ 0.73
VRK3-217ENST00000599538 ERVK-7P63135 1459 aa19.62■□□□□ 0.73
VRK3-217ENST00000599538 NEFLP07196 543 aa19.61■□□□□ 0.73
VRK3-217ENST00000599538 NLRP13Q86W25 1043 aa19.61■□□□□ 0.73
VRK3-217ENST00000599538 TRAK1Q9UPV9 953 aa19.61■□□□□ 0.73
VRK3-217ENST00000599538 RPGRIP1LQ68CZ1 1315 aa19.61■□□□□ 0.73
VRK3-217ENST00000599538 MYOM1P52179 1685 aa19.61■□□□□ 0.73
VRK3-217ENST00000599538 SENP3Q9H4L4 574 aaPredicted RBP19.61■□□□□ 0.73
VRK3-217ENST00000599538 NEXMIFQ5QGS0 1516 aa19.6■□□□□ 0.73
VRK3-217ENST00000599538 ADGRB1O14514 1584 aa19.6■□□□□ 0.73
VRK3-217ENST00000599538 PREX1Q8TCU6 1659 aa19.6■□□□□ 0.73
VRK3-217ENST00000599538 CDCA8Q53HL2 280 aa19.6■□□□□ 0.73
VRK3-217ENST00000599538 SETBP1Q9Y6X0 1596 aa19.59■□□□□ 0.73
VRK3-217ENST00000599538 IRX6P78412 446 aaPredicted RBP19.58■□□□□ 0.73
VRK3-217ENST00000599538 MYO5BQ9ULV0 1848 aa19.58■□□□□ 0.73
VRK3-217ENST00000599538 AMER1Q5JTC6 1135 aaPredicted RBP19.57■□□□□ 0.72
VRK3-217ENST00000599538 SLC52A1Q9NWF4 448 aa19.57■□□□□ 0.72
VRK3-217ENST00000599538 KDM5AP29375 1690 aaKnown RBP19.57■□□□□ 0.72
VRK3-217ENST00000599538 MYO3AQ8NEV4 1616 aa19.57■□□□□ 0.72
VRK3-217ENST00000599538 MLECQ14165 292 aa19.56■□□□□ 0.72
VRK3-217ENST00000599538 KNSTRNQ9Y448 316 aa19.56■□□□□ 0.72
VRK3-217ENST00000599538 CENPJQ9HC77 1338 aaPredicted RBP19.56■□□□□ 0.72
VRK3-217ENST00000599538 VGFO15240 615 aaPredicted RBP19.55■□□□□ 0.72
VRK3-217ENST00000599538 REREQ9P2R6 1566 aa19.55■□□□□ 0.72
VRK3-217ENST00000599538 AGLP35573 1532 aa19.54■□□□□ 0.72
VRK3-217ENST00000599538 TMEM131LA2VDJ0 1609 aa19.54■□□□□ 0.72
VRK3-217ENST00000599538 SBNO2Q9Y2G9 1366 aa19.52■□□□□ 0.72
VRK3-217ENST00000599538 CLTCQ00610 1675 aaKnown RBP19.51■□□□□ 0.71
VRK3-217ENST00000599538 CARD14Q9BXL6 1004 aa19.51■□□□□ 0.71
VRK3-217ENST00000599538 QRICH2Q9H0J4 1663 aa19.5■□□□□ 0.71
VRK3-217ENST00000599538 ASXL1Q8IXJ9 1541 aa19.5■□□□□ 0.71
VRK3-217ENST00000599538 PPP2R1AP30153 589 aa19.49■□□□□ 0.71
VRK3-217ENST00000599538 SMG6Q86US8 1419 aaKnown RBP19.48■□□□□ 0.71
VRK3-217ENST00000599538 ARHGEF40Q8TER5 1519 aa19.48■□□□□ 0.71
VRK3-217ENST00000599538 SALL2Q9Y467 1007 aaPredicted RBP19.48■□□□□ 0.71
VRK3-217ENST00000599538 SLC24A1O60721 1099 aa19.47■□□□□ 0.71
VRK3-217ENST00000599538 ZFYVE9O95405 1425 aa19.47■□□□□ 0.71
VRK3-217ENST00000599538 NUDCQ9Y266 331 aa19.46■□□□□ 0.71
VRK3-217ENST00000599538 ARHGEF28Q8N1W1 1705 aaKnown RBP19.46■□□□□ 0.71
VRK3-217ENST00000599538 PPP6R1Q9UPN7 881 aa19.45■□□□□ 0.7
VRK3-217ENST00000599538 SLC12A5Q9H2X9 1139 aa19.45■□□□□ 0.7
VRK3-217ENST00000599538 STK26Q9P289 416 aa19.45■□□□□ 0.7
VRK3-217ENST00000599538 SAFB2Q14151 953 aaKnown RBP eCLIP19.44■□□□□ 0.7
VRK3-217ENST00000599538 NPC1L1Q9UHC9 1359 aa19.43■□□□□ 0.7
VRK3-217ENST00000599538 STAG3Q9UJ98 1225 aa19.42■□□□□ 0.7
VRK3-217ENST00000599538 ADAMTS8Q9UP79 889 aa19.41■□□□□ 0.7
VRK3-217ENST00000599538 SPATA31D1Q6ZQQ2 1576 aa19.41■□□□□ 0.7
VRK3-217ENST00000599538 TULP4Q9NRJ4 1543 aa19.4■□□□□ 0.7
VRK3-217ENST00000599538 BLMP54132 1417 aaPredicted RBP19.4■□□□□ 0.7
VRK3-217ENST00000599538 A2ML1A8K2U0 1454 aa19.39■□□□□ 0.69
VRK3-217ENST00000599538 ZMYM3Q14202 1370 aa19.37■□□□□ 0.69
VRK3-217ENST00000599538 NSD3Q9BZ95 1437 aa19.37■□□□□ 0.69
VRK3-217ENST00000599538 CABP2Q9NPB3 220 aa19.37■□□□□ 0.69
VRK3-217ENST00000599538 ALKQ9UM73 1620 aa19.36■□□□□ 0.69
VRK3-217ENST00000599538 CDCA7LQ96GN5 454 aa19.36■□□□□ 0.69
VRK3-217ENST00000599538 PTPRMP28827 1452 aa19.36■□□□□ 0.69
VRK3-217ENST00000599538 EVC2Q86UK5 1308 aa19.35■□□□□ 0.69
VRK3-217ENST00000599538 PELP1Q8IZL8 1130 aaKnown RBP19.35■□□□□ 0.69
VRK3-217ENST00000599538 YTHDC2Q9H6S0 1430 aaKnown RBP19.35■□□□□ 0.69
VRK3-217ENST00000599538 PRAM1Q96QH2 718 aa19.34■□□□□ 0.69
VRK3-217ENST00000599538 INSRP06213 1382 aa19.33■□□□□ 0.69
VRK3-217ENST00000599538 TSHZ2Q9NRE2 1034 aa19.33■□□□□ 0.69
VRK3-217ENST00000599538 RNF123Q5XPI4 1314 aa19.33■□□□□ 0.68
VRK3-217ENST00000599538 RIMS2Q9UQ26 1411 aa19.33■□□□□ 0.68
VRK3-217ENST00000599538 ESF1Q9H501 851 aaKnown RBP19.33■□□□□ 0.68
VRK3-217ENST00000599538 MINK1Q8N4C8 1332 aaPredicted RBP19.32■□□□□ 0.68
VRK3-217ENST00000599538 WDR43Q15061 677 aaKnown RBP eCLIP19.32■□□□□ 0.68
VRK3-217ENST00000599538 TNNT2P45379 298 aaPredicted RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms