RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 EFCAB6Q5THR3 1501 aa12.36□□□□□ -0.43
SMAD4-206ENST00000588860 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
SMAD4-206ENST00000588860 ZMYM4Q5VZL5 1548 aa12.33□□□□□ -0.44
SMAD4-206ENST00000588860 CAMSAP1Q5T5Y3 1602 aa12.33□□□□□ -0.44
SMAD4-206ENST00000588860 LMTK2Q8IWU2 1503 aa12.32□□□□□ -0.44
SMAD4-206ENST00000588860 RAPGEF3O95398 923 aa12.32□□□□□ -0.44
SMAD4-206ENST00000588860 KDM2AQ9Y2K7 1162 aa12.32□□□□□ -0.44
SMAD4-206ENST00000588860 ZC3H13Q5T200 1668 aaKnown RBP12.32□□□□□ -0.44
SMAD4-206ENST00000588860 PTPRTO14522 1441 aa12.31□□□□□ -0.44
SMAD4-206ENST00000588860 LAMC1P11047 1609 aa12.31□□□□□ -0.44
SMAD4-206ENST00000588860 DCAF11Q8TEB1 546 aa12.31□□□□□ -0.44
SMAD4-206ENST00000588860 PRAG1Q86YV5 1406 aa12.3□□□□□ -0.44
SMAD4-206ENST00000588860 MROH2AA6NES4 1674 aa12.3□□□□□ -0.44
SMAD4-206ENST00000588860 SPATA31E1Q6ZUB1 1445 aa12.29□□□□□ -0.44
SMAD4-206ENST00000588860 IFT172Q9UG01 1749 aa12.29□□□□□ -0.44
SMAD4-206ENST00000588860 ABCC3O15438 1527 aa12.29□□□□□ -0.44
SMAD4-206ENST00000588860 ARID4BQ4LE39 1312 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-206ENST00000588860 MADDQ8WXG6 1647 aa12.29□□□□□ -0.44
SMAD4-206ENST00000588860 USP47Q96K76 1375 aa12.29□□□□□ -0.44
SMAD4-206ENST00000588860 FXR2P51116 673 aaKnown RBP eCLIP12.28□□□□□ -0.44
SMAD4-206ENST00000588860 RGL3Q3MIN7 710 aa12.28□□□□□ -0.44
SMAD4-206ENST00000588860 YTHDC1Q96MU7 727 aaKnown RBP12.28□□□□□ -0.44
SMAD4-206ENST00000588860 UGGT1Q9NYU2 1555 aa12.27□□□□□ -0.44
SMAD4-206ENST00000588860 SIGLEC1Q9BZZ2 1709 aa12.27□□□□□ -0.45
SMAD4-206ENST00000588860 WASHC2AQ641Q2 1341 aa12.27□□□□□ -0.45
SMAD4-206ENST00000588860 YEATS2Q9ULM3 1422 aa12.27□□□□□ -0.45
SMAD4-206ENST00000588860 NEURL4Q96JN8 1562 aa12.26□□□□□ -0.45
SMAD4-206ENST00000588860 HAX1O00165 279 aa12.26□□□□□ -0.45
SMAD4-206ENST00000588860 PITPNM1O00562 1244 aa12.26□□□□□ -0.45
SMAD4-206ENST00000588860 CENPBP07199 599 aaPredicted RBP12.26□□□□□ -0.45
SMAD4-206ENST00000588860 CCDC7Q96M83 1385 aa12.26□□□□□ -0.45
SMAD4-206ENST00000588860 ROCK2O75116 1388 aaKnown RBP12.25□□□□□ -0.45
SMAD4-206ENST00000588860 KIAA1210Q9ULL0 1709 aa12.25□□□□□ -0.45
SMAD4-206ENST00000588860 PPLO60437 1756 aa12.24□□□□□ -0.45
SMAD4-206ENST00000588860 GGT6Q6P531 493 aa12.24□□□□□ -0.45
SMAD4-206ENST00000588860 CARD11Q9BXL7 1154 aa12.24□□□□□ -0.45
SMAD4-206ENST00000588860 CNTLNQ9NXG0 1405 aa12.24□□□□□ -0.45
SMAD4-206ENST00000588860 REREQ9P2R6 1566 aa12.24□□□□□ -0.45
SMAD4-206ENST00000588860 IQGAP1P46940 1657 aa12.23□□□□□ -0.45
SMAD4-206ENST00000588860 PREX1Q8TCU6 1659 aa12.22□□□□□ -0.45
SMAD4-206ENST00000588860 ARHGEF40Q8TER5 1519 aa12.22□□□□□ -0.45
SMAD4-206ENST00000588860 C11orf95C9JLR9 678 aaPredicted RBP12.22□□□□□ -0.45
SMAD4-206ENST00000588860 ANP32CO43423 234 aa12.22□□□□□ -0.45
SMAD4-206ENST00000588860 MYO5BQ9ULV0 1848 aa12.22□□□□□ -0.45
SMAD4-206ENST00000588860 RIMS1Q86UR5 1692 aaKnown RBP12.22□□□□□ -0.45
SMAD4-206ENST00000588860 NPATQ14207 1427 aa12.21□□□□□ -0.45
SMAD4-206ENST00000588860 KIF7Q2M1P5 1343 aa12.21□□□□□ -0.45
SMAD4-206ENST00000588860 PIK3C2BO00750 1634 aa12.21□□□□□ -0.46
SMAD4-206ENST00000588860 ADGRB3O60242 1522 aa12.21□□□□□ -0.46
SMAD4-206ENST00000588860 CLTCQ00610 1675 aaKnown RBP12.2□□□□□ -0.46
SMAD4-206ENST00000588860 WASHC2CQ9Y4E1 1318 aa12.2□□□□□ -0.46
SMAD4-206ENST00000588860 SYNMO15061 1565 aa12.2□□□□□ -0.46
SMAD4-206ENST00000588860 GPRASP1Q5JY77 1395 aa12.19□□□□□ -0.46
SMAD4-206ENST00000588860 MYOM2P54296 1465 aa12.19□□□□□ -0.46
SMAD4-206ENST00000588860 AGLP35573 1532 aa12.18□□□□□ -0.46
SMAD4-206ENST00000588860 NBPF1Q3BBV0 1214 aa12.17□□□□□ -0.46
SMAD4-206ENST00000588860 CCER2I3L3R5 266 aa12.16□□□□□ -0.46
SMAD4-206ENST00000588860 POLR3GLQ9BT43 218 aa12.16□□□□□ -0.46
SMAD4-206ENST00000588860 ARHGAP31Q2M1Z3 1444 aa12.16□□□□□ -0.46
SMAD4-206ENST00000588860 NOS1P29475 1434 aa12.15□□□□□ -0.46
SMAD4-206ENST00000588860 ST20-MTHFSA0A0A6YYL1 179 aa12.15□□□□□ -0.46
SMAD4-206ENST00000588860 ATXN8OSP0DMR3 200 aa12.15□□□□□ -0.46
SMAD4-206ENST00000588860 STAC3Q96MF2 364 aa12.15□□□□□ -0.46
SMAD4-206ENST00000588860 CHGAP10645 457 aaKnown RBP12.13□□□□□ -0.47
SMAD4-206ENST00000588860 NRXN1Q9ULB1 1477 aa12.12□□□□□ -0.47
SMAD4-206ENST00000588860 STRCQ7RTU9 1775 aa12.11□□□□□ -0.47
SMAD4-206ENST00000588860 SCAF11Q99590 1463 aaKnown RBP12.11□□□□□ -0.47
SMAD4-206ENST00000588860 TMEM131LA2VDJ0 1609 aa12.11□□□□□ -0.47
SMAD4-206ENST00000588860 NEXMIFQ5QGS0 1516 aa12.11□□□□□ -0.47
SMAD4-206ENST00000588860 SETBP1Q9Y6X0 1596 aa12.09□□□□□ -0.47
SMAD4-206ENST00000588860 ERVK-7P63135 1459 aa12.09□□□□□ -0.47
SMAD4-206ENST00000588860 MYO3AQ8NEV4 1616 aa12.09□□□□□ -0.47
SMAD4-206ENST00000588860 KDM5AP29375 1690 aaKnown RBP12.09□□□□□ -0.47
SMAD4-206ENST00000588860 ADGRF5Q8IZF2 1346 aa12.09□□□□□ -0.47
SMAD4-206ENST00000588860 IQSEC2Q5JU85 1478 aa12.08□□□□□ -0.47
SMAD4-206ENST00000588860 QRICH2Q9H0J4 1663 aa12.08□□□□□ -0.48
SMAD4-206ENST00000588860 EIF3AQ14152 1382 aaKnown RBP12.07□□□□□ -0.48
SMAD4-206ENST00000588860 SPDYE2BA6NHP3 402 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 SPDYE6P0CI01 402 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 MLECQ14165 292 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 SPDYE2Q495Y8 402 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 LTBP4Q8N2S1 1624 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 RPGRIP1LQ68CZ1 1315 aa12.07□□□□□ -0.48
SMAD4-206ENST00000588860 PIK3C2GO75747 1445 aa12.06□□□□□ -0.48
SMAD4-206ENST00000588860 MYOM1P52179 1685 aa12.06□□□□□ -0.48
SMAD4-206ENST00000588860 UBAP1LF5GYI3 381 aa12.05□□□□□ -0.48
SMAD4-206ENST00000588860 TMF1P82094 1093 aa12.05□□□□□ -0.48
SMAD4-206ENST00000588860 EVX2Q03828 476 aa12.05□□□□□ -0.48
SMAD4-206ENST00000588860 CFAP70Q5T0N1 1121 aa12.05□□□□□ -0.48
SMAD4-206ENST00000588860 TESK2Q96S53 571 aa12.05□□□□□ -0.48
SMAD4-206ENST00000588860 PRKRIP1Q9H875 184 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-206ENST00000588860 ARHGEF28Q8N1W1 1705 aaKnown RBP12.05□□□□□ -0.48
SMAD4-206ENST00000588860 SLC52A1Q9NWF4 448 aa12.04□□□□□ -0.48
SMAD4-206ENST00000588860 FER1L4A9Z1Z3 1794 aa12.03□□□□□ -0.48
SMAD4-206ENST00000588860 CEBPAP49715 358 aaPredicted RBP12.03□□□□□ -0.48
SMAD4-206ENST00000588860 IDI1Q13907 227 aa12.03□□□□□ -0.48
SMAD4-206ENST00000588860 ADGRB1O14514 1584 aa12.03□□□□□ -0.48
SMAD4-206ENST00000588860 FBXO31Q5XUX0 539 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-206ENST00000588860 CNGB1Q14028 1251 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-206ENST00000588860 MED1Q15648 1581 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms