RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 ZFYVE9O95405 1425 aa13.74□□□□□ -0.21
RFFL-210ENST00000582308 RIMS2Q9UQ26 1411 aa13.74□□□□□ -0.21
RFFL-210ENST00000582308 TMEM2Q9UHN6 1383 aa13.74□□□□□ -0.21
RFFL-210ENST00000582308 SLIT1O75093 1534 aa13.74□□□□□ -0.21
RFFL-210ENST00000582308 ARHGAP23Q9P227 1491 aa13.74□□□□□ -0.21
RFFL-210ENST00000582308 PPP1R15AO75807 674 aaPredicted RBP13.73□□□□□ -0.21
RFFL-210ENST00000582308 NUTM2DQ5VT03 806 aaPredicted RBP13.73□□□□□ -0.21
RFFL-210ENST00000582308 LMTK3Q96Q04 1460 aa13.73□□□□□ -0.21
RFFL-210ENST00000582308 ADGRF5Q8IZF2 1346 aa13.71□□□□□ -0.21
RFFL-210ENST00000582308 LTKP29376 864 aa13.71□□□□□ -0.21
RFFL-210ENST00000582308 ZEB1P37275 1124 aaPredicted RBP13.71□□□□□ -0.21
RFFL-210ENST00000582308 MYOM2P54296 1465 aa13.71□□□□□ -0.21
RFFL-210ENST00000582308 NBPF8Q3BBV2 869 aa13.7□□□□□ -0.22
RFFL-210ENST00000582308 STAC3Q96MF2 364 aa13.7□□□□□ -0.22
RFFL-210ENST00000582308 NRXN1Q9ULB1 1477 aa13.69□□□□□ -0.22
RFFL-210ENST00000582308 VGFO15240 615 aaPredicted RBP13.69□□□□□ -0.22
RFFL-210ENST00000582308 HSPA2P54652 639 aa13.69□□□□□ -0.22
RFFL-210ENST00000582308 TXNDC2Q86VQ3 553 aa13.69□□□□□ -0.22
RFFL-210ENST00000582308 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.69□□□□□ -0.22
RFFL-210ENST00000582308 PRAG1Q86YV5 1406 aa13.69□□□□□ -0.22
RFFL-210ENST00000582308 POLR1AO95602 1720 aaPredicted RBP13.69□□□□□ -0.22
RFFL-210ENST00000582308 HDGFP51858 240 aaKnown RBP13.68□□□□□ -0.22
RFFL-210ENST00000582308 EID1Q9Y6B2 187 aa13.68□□□□□ -0.22
RFFL-210ENST00000582308 SCAF11Q99590 1463 aaKnown RBP13.67□□□□□ -0.22
RFFL-210ENST00000582308 PIK3C2GO75747 1445 aa13.66□□□□□ -0.22
RFFL-210ENST00000582308 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
RFFL-210ENST00000582308 NRXN3Q9Y4C0 1643 aa13.66□□□□□ -0.22
RFFL-210ENST00000582308 ANKLE2Q86XL3 938 aa13.66□□□□□ -0.22
RFFL-210ENST00000582308 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
RFFL-210ENST00000582308 IQGAP1P46940 1657 aa13.66□□□□□ -0.22
RFFL-210ENST00000582308 TRPM1Q7Z4N2 1603 aa13.65□□□□□ -0.22
RFFL-210ENST00000582308 KIAA1210Q9ULL0 1709 aa13.65□□□□□ -0.22
RFFL-210ENST00000582308 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
RFFL-210ENST00000582308 SETBP1Q9Y6X0 1596 aa13.64□□□□□ -0.23
RFFL-210ENST00000582308 PLEKHG1Q9ULL1 1385 aa13.64□□□□□ -0.23
RFFL-210ENST00000582308 SETD1AO15047 1707 aaKnown RBP13.64□□□□□ -0.23
RFFL-210ENST00000582308 CFAP70Q5T0N1 1121 aa13.63□□□□□ -0.23
RFFL-210ENST00000582308 C14orf93Q9H972 538 aaKnown RBP13.63□□□□□ -0.23
RFFL-210ENST00000582308 ALKQ9UM73 1620 aa13.63□□□□□ -0.23
RFFL-210ENST00000582308 MED14O60244 1454 aa13.62□□□□□ -0.23
RFFL-210ENST00000582308 NBPF1Q3BBV0 1214 aa13.62□□□□□ -0.23
RFFL-210ENST00000582308 AEBP2Q6ZN18 517 aaPredicted RBP13.62□□□□□ -0.23
RFFL-210ENST00000582308 RALGAPBQ86X10 1494 aa13.61□□□□□ -0.23
RFFL-210ENST00000582308 LAMC1P11047 1609 aa13.61□□□□□ -0.23
RFFL-210ENST00000582308 ADAMTS13Q76LX8 1427 aa13.61□□□□□ -0.23
RFFL-210ENST00000582308 NPHP4O75161 1426 aaPredicted RBP13.6□□□□□ -0.23
RFFL-210ENST00000582308 BCANQ96GW7 911 aa13.6□□□□□ -0.23
RFFL-210ENST00000582308 SLC26A8Q96RN1 970 aa13.59□□□□□ -0.23
RFFL-210ENST00000582308 ASXL1Q8IXJ9 1541 aa13.59□□□□□ -0.23
RFFL-210ENST00000582308 TMEM132EQ6IEE7 984 aa13.58□□□□□ -0.24
RFFL-210ENST00000582308 TBX22Q9Y458 520 aa13.58□□□□□ -0.24
RFFL-210ENST00000582308 ADGRB1O14514 1584 aa13.58□□□□□ -0.24
RFFL-210ENST00000582308 GPRASP1Q5JY77 1395 aa13.58□□□□□ -0.24
RFFL-210ENST00000582308 DIP2AQ14689 1571 aa13.57□□□□□ -0.24
RFFL-210ENST00000582308 ROCK2O75116 1388 aaKnown RBP13.57□□□□□ -0.24
RFFL-210ENST00000582308 METP08581 1390 aa13.57□□□□□ -0.24
RFFL-210ENST00000582308 CHD2O14647 1828 aaKnown RBP13.55□□□□□ -0.24
RFFL-210ENST00000582308 CARD11Q9BXL7 1154 aa13.54□□□□□ -0.24
RFFL-210ENST00000582308 PTPRUQ92729 1446 aa13.53□□□□□ -0.24
RFFL-210ENST00000582308 YTHDC2Q9H6S0 1430 aaKnown RBP13.52□□□□□ -0.25
RFFL-210ENST00000582308 KNDC1Q76NI1 1749 aa13.51□□□□□ -0.25
RFFL-210ENST00000582308 ARHGEF28Q8N1W1 1705 aaKnown RBP13.51□□□□□ -0.25
RFFL-210ENST00000582308 LRPPRCP42704 1394 aaKnown RBP13.51□□□□□ -0.25
RFFL-210ENST00000582308 PIK3R4Q99570 1358 aa13.51□□□□□ -0.25
RFFL-210ENST00000582308 STK26Q9P289 416 aa13.51□□□□□ -0.25
RFFL-210ENST00000582308 STRCP1A6NGW2 1772 aa13.5□□□□□ -0.25
RFFL-210ENST00000582308 XRN1Q8IZH2 1706 aaKnown RBP13.5□□□□□ -0.25
RFFL-210ENST00000582308 TRAK1Q9UPV9 953 aa13.5□□□□□ -0.25
RFFL-210ENST00000582308 ABCC11Q96J66 1382 aa13.49□□□□□ -0.25
RFFL-210ENST00000582308 USP47Q96K76 1375 aa13.49□□□□□ -0.25
RFFL-210ENST00000582308 DMRT2Q9Y5R5 561 aa13.49□□□□□ -0.25
RFFL-210ENST00000582308 AMOTL2Q9Y2J4 779 aa13.48□□□□□ -0.25
RFFL-210ENST00000582308 TECPR2O15040 1411 aa13.47□□□□□ -0.25
RFFL-210ENST00000582308 NWD1Q149M9 1564 aa13.47□□□□□ -0.25
RFFL-210ENST00000582308 HSPA5P11021 654 aaKnown RBP13.47□□□□□ -0.25
RFFL-210ENST00000582308 KCNA6P17658 529 aa13.47□□□□□ -0.25
RFFL-210ENST00000582308 EIF4G2P78344 907 aaKnown RBP eCLIP13.47□□□□□ -0.25
RFFL-210ENST00000582308 CPS1P31327 1500 aa13.47□□□□□ -0.25
RFFL-210ENST00000582308 DLC1Q96QB1 1528 aa13.47□□□□□ -0.25
RFFL-210ENST00000582308 ROBO2Q9HCK4 1378 aa13.45□□□□□ -0.26
RFFL-210ENST00000582308 QRICH2Q9H0J4 1663 aa13.45□□□□□ -0.26
RFFL-210ENST00000582308 ST20-MTHFSA0A0A6YYL1 179 aa13.45□□□□□ -0.26
RFFL-210ENST00000582308 WAPLQ7Z5K2 1190 aa13.45□□□□□ -0.26
RFFL-210ENST00000582308 SIRT1Q96EB6 747 aa13.45□□□□□ -0.26
RFFL-210ENST00000582308 HIRIP3Q9BW71 556 aaPredicted RBP13.45□□□□□ -0.26
RFFL-210ENST00000582308 PRAM1Q96QH2 718 aa13.44□□□□□ -0.26
RFFL-210ENST00000582308 FAM135BQ49AJ0 1406 aa13.44□□□□□ -0.26
RFFL-210ENST00000582308 EIF3AQ14152 1382 aaKnown RBP13.44□□□□□ -0.26
RFFL-210ENST00000582308 PLEKHH1Q9ULM0 1364 aa13.44□□□□□ -0.26
RFFL-210ENST00000582308 ZNF335Q9H4Z2 1342 aaPredicted RBP13.43□□□□□ -0.26
RFFL-210ENST00000582308 PTCH1Q13635 1447 aa13.43□□□□□ -0.26
RFFL-210ENST00000582308 CENPJQ9HC77 1338 aaPredicted RBP13.42□□□□□ -0.26
RFFL-210ENST00000582308 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.42□□□□□ -0.26
RFFL-210ENST00000582308 SAFB2Q14151 953 aaKnown RBP eCLIP13.42□□□□□ -0.26
RFFL-210ENST00000582308 TESK2Q96S53 571 aa13.42□□□□□ -0.26
RFFL-210ENST00000582308 POGKQ9P215 609 aa13.42□□□□□ -0.26
RFFL-210ENST00000582308 NKTRP30414 1462 aaKnown RBP13.42□□□□□ -0.26
RFFL-210ENST00000582308 XIRP1Q702N8 1843 aaKnown RBP13.41□□□□□ -0.26
RFFL-210ENST00000582308 PROSER2Q86WR7 435 aaPredicted RBP13.39□□□□□ -0.27
RFFL-210ENST00000582308 RBM33Q96EV2 1170 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms