RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 ADGRB3O60242 1522 aa31.29■■■□□ 2.6
CCDC47-204ENST00000582252 SLC52A1Q9NWF4 448 aa31.29■■■□□ 2.6
CCDC47-204ENST00000582252 C3P01024 1663 aa31.27■■■□□ 2.6
CCDC47-204ENST00000582252 FBXO31Q5XUX0 539 aaPredicted RBP31.27■■■□□ 2.6
CCDC47-204ENST00000582252 ADAMTSL3P82987 1691 aa31.26■■■□□ 2.59
CCDC47-204ENST00000582252 MADDQ8WXG6 1647 aa31.26■■■□□ 2.59
CCDC47-204ENST00000582252 ST20-MTHFSA0A0A6YYL1 179 aa31.24■■■□□ 2.59
CCDC47-204ENST00000582252 IFT172Q9UG01 1749 aa31.22■■■□□ 2.59
CCDC47-204ENST00000582252 RIMS1Q86UR5 1692 aaKnown RBP31.21■■■□□ 2.59
CCDC47-204ENST00000582252 PRKRIP1Q9H875 184 aaPredicted RBP31.21■■■□□ 2.59
CCDC47-204ENST00000582252 MYO5BQ9ULV0 1848 aa31.19■■■□□ 2.58
CCDC47-204ENST00000582252 IDI1Q13907 227 aa31.18■■■□□ 2.58
CCDC47-204ENST00000582252 KIAA1210Q9ULL0 1709 aa31.17■■■□□ 2.58
CCDC47-204ENST00000582252 TMEM131LA2VDJ0 1609 aa31.17■■■□□ 2.58
CCDC47-204ENST00000582252 POLR3GLQ9BT43 218 aa31.17■■■□□ 2.58
CCDC47-204ENST00000582252 NBPF1Q3BBV0 1214 aa31.16■■■□□ 2.58
CCDC47-204ENST00000582252 PPLO60437 1756 aa31.15■■■□□ 2.58
CCDC47-204ENST00000582252 CHGAP10645 457 aaKnown RBP31.15■■■□□ 2.58
CCDC47-204ENST00000582252 TNRQ92752 1358 aa31.15■■■□□ 2.58
CCDC47-204ENST00000582252 MYOM2P54296 1465 aa31.12■■■□□ 2.57
CCDC47-204ENST00000582252 IQGAP1P46940 1657 aa31.11■■■□□ 2.57
CCDC47-204ENST00000582252 KDM5AP29375 1690 aaKnown RBP31.11■■■□□ 2.57
CCDC47-204ENST00000582252 RPGRIP1LQ68CZ1 1315 aa31.1■■■□□ 2.57
CCDC47-204ENST00000582252 CEBPAP49715 358 aaPredicted RBP31.07■■■□□ 2.56
CCDC47-204ENST00000582252 NLRP1Q9C000 1473 aa31.07■■■□□ 2.56
CCDC47-204ENST00000582252 NEXMIFQ5QGS0 1516 aa31.06■■■□□ 2.56
CCDC47-204ENST00000582252 STAG3Q9UJ98 1225 aa31.04■■■□□ 2.56
CCDC47-204ENST00000582252 A2ML1A8K2U0 1454 aa31.03■■■□□ 2.56
CCDC47-204ENST00000582252 SCAF11Q99590 1463 aaKnown RBP31.02■■■□□ 2.56
CCDC47-204ENST00000582252 SETD1BQ9UPS6 1966 aaKnown RBP31.02■■■□□ 2.56
CCDC47-204ENST00000582252 UBR1Q8IWV7 1749 aa31.01■■■□□ 2.56
CCDC47-204ENST00000582252 KTN1Q86UP2 1357 aaKnown RBP31.01■■■□□ 2.56
CCDC47-204ENST00000582252 NRXN1Q9ULB1 1477 aa31.01■■■□□ 2.56
CCDC47-204ENST00000582252 TMF1P82094 1093 aa31.01■■■□□ 2.55
CCDC47-204ENST00000582252 EIF3AQ14152 1382 aaKnown RBP30.99■■■□□ 2.55
CCDC47-204ENST00000582252 MRS2Q9HD23 443 aa30.99■■■□□ 2.55
CCDC47-204ENST00000582252 MYO3AQ8NEV4 1616 aa30.99■■■□□ 2.55
CCDC47-204ENST00000582252 TESK2Q96S53 571 aa30.98■■■□□ 2.55
CCDC47-204ENST00000582252 ZFYVE9O95405 1425 aa30.96■■■□□ 2.55
CCDC47-204ENST00000582252 PLPPR3Q6T4P5 718 aa30.96■■■□□ 2.55
CCDC47-204ENST00000582252 VGFO15240 615 aaPredicted RBP30.94■■■□□ 2.54
CCDC47-204ENST00000582252 ADGRF5Q8IZF2 1346 aa30.94■■■□□ 2.54
CCDC47-204ENST00000582252 PTPRMP28827 1452 aa30.93■■■□□ 2.54
CCDC47-204ENST00000582252 PIK3C2GO75747 1445 aa30.92■■■□□ 2.54
CCDC47-204ENST00000582252 SLC24A1O60721 1099 aa30.91■■■□□ 2.54
CCDC47-204ENST00000582252 HNRNPUQ00839 825 aaKnown RBP eCLIP30.91■■■□□ 2.54
CCDC47-204ENST00000582252 DISP3Q9P2K9 1392 aa30.91■■■□□ 2.54
CCDC47-204ENST00000582252 CDCA8Q53HL2 280 aa30.9■■■□□ 2.54
CCDC47-204ENST00000582252 RALBP1Q15311 655 aa30.88■■■□□ 2.53
CCDC47-204ENST00000582252 SETBP1Q9Y6X0 1596 aa30.88■■■□□ 2.53
CCDC47-204ENST00000582252 RIMS2Q9UQ26 1411 aa30.88■■■□□ 2.53
CCDC47-204ENST00000582252 ZNF142P52746 1687 aaPredicted RBP30.88■■■□□ 2.53
CCDC47-204ENST00000582252 CCDC184Q52MB2 194 aa30.87■■■□□ 2.53
CCDC47-204ENST00000582252 CEP170BQ9Y4F5 1589 aaPredicted RBP30.87■■■□□ 2.53
CCDC47-204ENST00000582252 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.83■■■□□ 2.53
CCDC47-204ENST00000582252 TMEM2Q9UHN6 1383 aa30.83■■■□□ 2.53
CCDC47-204ENST00000582252 HDGFP51858 240 aaKnown RBP30.82■■■□□ 2.52
CCDC47-204ENST00000582252 NUTM2DQ5VT03 806 aaPredicted RBP30.81■■■□□ 2.52
CCDC47-204ENST00000582252 FAM9BQ8IZU0 186 aa30.81■■■□□ 2.52
CCDC47-204ENST00000582252 MYBBP1AQ9BQG0 1328 aaKnown RBP30.8■■■□□ 2.52
CCDC47-204ENST00000582252 CFAP70Q5T0N1 1121 aa30.8■■■□□ 2.52
CCDC47-204ENST00000582252 SLIT1O75093 1534 aa30.79■■■□□ 2.52
CCDC47-204ENST00000582252 C14orf93Q9H972 538 aaKnown RBP30.78■■■□□ 2.52
CCDC47-204ENST00000582252 BRD4O60885 1362 aaPredicted RBP30.77■■■□□ 2.52
CCDC47-204ENST00000582252 THEMISQ8N1K5 641 aaPredicted RBP30.77■■■□□ 2.52
CCDC47-204ENST00000582252 ARHGAP23Q9P227 1491 aa30.76■■■□□ 2.52
CCDC47-204ENST00000582252 PARD3Q8TEW0 1356 aa30.74■■■□□ 2.51
CCDC47-204ENST00000582252 PER1O15534 1290 aaPredicted RBP30.73■■■□□ 2.51
CCDC47-204ENST00000582252 CNGB1Q14028 1251 aaPredicted RBP30.73■■■□□ 2.51
CCDC47-204ENST00000582252 TMC1Q8TDI8 760 aa30.73■■■□□ 2.51
CCDC47-204ENST00000582252 ADGRB1O14514 1584 aa30.73■■■□□ 2.51
CCDC47-204ENST00000582252 ZBED9Q6R2W3 1325 aa30.71■■■□□ 2.51
CCDC47-204ENST00000582252 PANK3Q9H999 370 aa30.71■■■□□ 2.51
CCDC47-204ENST00000582252 ALKQ9UM73 1620 aa30.71■■■□□ 2.51
CCDC47-204ENST00000582252 SBNO2Q9Y2G9 1366 aa30.7■■■□□ 2.51
CCDC47-204ENST00000582252 SUPT16HQ9Y5B9 1047 aaKnown RBP30.7■■■□□ 2.5
CCDC47-204ENST00000582252 NRXN3Q9Y4C0 1643 aa30.7■■■□□ 2.5
CCDC47-204ENST00000582252 SETD1AO15047 1707 aaKnown RBP30.69■■■□□ 2.5
CCDC47-204ENST00000582252 NEFLP07196 543 aa30.68■■■□□ 2.5
CCDC47-204ENST00000582252 EID1Q9Y6B2 187 aa30.68■■■□□ 2.5
CCDC47-204ENST00000582252 KDM4FA0A1W2PPD8 638 aa30.67■■■□□ 2.5
CCDC47-204ENST00000582252 NLRP13Q86W25 1043 aa30.66■■■□□ 2.5
CCDC47-204ENST00000582252 MYOM1P52179 1685 aa30.66■■■□□ 2.5
CCDC47-204ENST00000582252 PLEKHG1Q9ULL1 1385 aa30.65■■■□□ 2.5
CCDC47-204ENST00000582252 ASXL1Q8IXJ9 1541 aa30.64■■■□□ 2.5
CCDC47-204ENST00000582252 TXNDC2Q86VQ3 553 aa30.64■■■□□ 2.5
CCDC47-204ENST00000582252 LTKP29376 864 aa30.62■■■□□ 2.49
CCDC47-204ENST00000582252 PNISRQ8TF01 805 aaKnown RBP30.62■■■□□ 2.49
CCDC47-204ENST00000582252 CENPJQ9HC77 1338 aaPredicted RBP30.61■■■□□ 2.49
CCDC47-204ENST00000582252 QRICH2Q9H0J4 1663 aa30.61■■■□□ 2.49
CCDC47-204ENST00000582252 TMEM132EQ6IEE7 984 aa30.59■■■□□ 2.49
CCDC47-204ENST00000582252 KNSTRNQ9Y448 316 aa30.59■■■□□ 2.49
CCDC47-204ENST00000582252 ARHGEF28Q8N1W1 1705 aaKnown RBP30.58■■■□□ 2.49
CCDC47-204ENST00000582252 LRPPRCP42704 1394 aaKnown RBP30.57■■■□□ 2.49
CCDC47-204ENST00000582252 SENP3Q9H4L4 574 aaPredicted RBP30.57■■■□□ 2.48
CCDC47-204ENST00000582252 BCANQ96GW7 911 aa30.55■■■□□ 2.48
CCDC47-204ENST00000582252 CC2D1BQ5T0F9 858 aaKnown RBP30.54■■■□□ 2.48
CCDC47-204ENST00000582252 ADAMTS13Q76LX8 1427 aa30.54■■■□□ 2.48
CCDC47-204ENST00000582252 YTHDC2Q9H6S0 1430 aaKnown RBP30.54■■■□□ 2.48
CCDC47-204ENST00000582252 DIP2AQ14689 1571 aa30.54■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms