RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 FBXO41Q8TF61 875 aa30.05■■■□□ 2.4
SS18-218ENST00000581021 MPHOSPH9Q99550 1183 aa30.05■■■□□ 2.4
SS18-218ENST00000581021 NUTM2DQ5VT03 806 aaPredicted RBP29.99■■■□□ 2.39
SS18-218ENST00000581021 SENP3Q9H4L4 574 aaPredicted RBP29.99■■■□□ 2.39
SS18-218ENST00000581021 CPS1P31327 1500 aa29.99■■■□□ 2.39
SS18-218ENST00000581021 PLEKHG1Q9ULL1 1385 aa29.99■■■□□ 2.39
SS18-218ENST00000581021 IQSEC2Q5JU85 1478 aa29.99■■■□□ 2.39
SS18-218ENST00000581021 SLC26A8Q96RN1 970 aa29.96■■■□□ 2.39
SS18-218ENST00000581021 NEXMIFQ5QGS0 1516 aa29.93■■■□□ 2.38
SS18-218ENST00000581021 PPP1R15AO75807 674 aaPredicted RBP29.93■■■□□ 2.38
SS18-218ENST00000581021 KIF1BO60333 1816 aa29.93■■■□□ 2.38
SS18-218ENST00000581021 ADAMTS13Q76LX8 1427 aa29.91■■■□□ 2.38
SS18-218ENST00000581021 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.91■■■□□ 2.38
SS18-218ENST00000581021 LRRC7Q96NW7 1537 aa29.91■■■□□ 2.38
SS18-218ENST00000581021 ACIN1Q9UKV3 1341 aaKnown RBP29.9■■■□□ 2.38
SS18-218ENST00000581021 ZNF326Q5BKZ1 582 aaKnown RBP29.88■■■□□ 2.37
SS18-218ENST00000581021 NRXN3Q9Y4C0 1643 aa29.88■■■□□ 2.37
SS18-218ENST00000581021 HDGFP51858 240 aaKnown RBP29.87■■■□□ 2.37
SS18-218ENST00000581021 CCDC144AA2RUR9 1427 aa29.87■■■□□ 2.37
SS18-218ENST00000581021 NWD1Q149M9 1564 aa29.86■■■□□ 2.37
SS18-218ENST00000581021 HRCP23327 699 aa29.86■■■□□ 2.37
SS18-218ENST00000581021 BCANQ96GW7 911 aa29.86■■■□□ 2.37
SS18-218ENST00000581021 SPATA31E1Q6ZUB1 1445 aa29.84■■■□□ 2.37
SS18-218ENST00000581021 SETBP1Q9Y6X0 1596 aa29.83■■■□□ 2.37
SS18-218ENST00000581021 DIP2AQ14689 1571 aa29.81■■■□□ 2.36
SS18-218ENST00000581021 KCNA6P17658 529 aa29.8■■■□□ 2.36
SS18-218ENST00000581021 TBX22Q9Y458 520 aa29.8■■■□□ 2.36
SS18-218ENST00000581021 ALKQ9UM73 1620 aa29.8■■■□□ 2.36
SS18-218ENST00000581021 XIRP1Q702N8 1843 aaKnown RBP29.8■■■□□ 2.36
SS18-218ENST00000581021 PPLO60437 1756 aa29.77■■■□□ 2.36
SS18-218ENST00000581021 CHD2O14647 1828 aaKnown RBP29.77■■■□□ 2.36
SS18-218ENST00000581021 ANKRD30BQ9BXX2 1392 aa29.77■■■□□ 2.36
SS18-218ENST00000581021 NKTRP30414 1462 aaKnown RBP29.76■■■□□ 2.35
SS18-218ENST00000581021 UBAP1LF5GYI3 381 aa29.75■■■□□ 2.35
SS18-218ENST00000581021 PTPRUQ92729 1446 aa29.74■■■□□ 2.35
SS18-218ENST00000581021 RPGRIP1LQ68CZ1 1315 aa29.72■■■□□ 2.35
SS18-218ENST00000581021 RBM33Q96EV2 1170 aaKnown RBP29.72■■■□□ 2.35
SS18-218ENST00000581021 TMEM94Q12767 1356 aa29.72■■■□□ 2.35
SS18-218ENST00000581021 IFT172Q9UG01 1749 aa29.71■■■□□ 2.35
SS18-218ENST00000581021 METP08581 1390 aa29.7■■■□□ 2.35
SS18-218ENST00000581021 PIK3R4Q99570 1358 aa29.7■■■□□ 2.35
SS18-218ENST00000581021 RGL3Q3MIN7 710 aa29.7■■■□□ 2.35
SS18-218ENST00000581021 SETD1AO15047 1707 aaKnown RBP29.69■■■□□ 2.34
SS18-218ENST00000581021 XRN1Q8IZH2 1706 aaKnown RBP29.67■■■□□ 2.34
SS18-218ENST00000581021 VGFO15240 615 aaPredicted RBP29.66■■■□□ 2.34
SS18-218ENST00000581021 PROSER2Q86WR7 435 aaPredicted RBP29.66■■■□□ 2.34
SS18-218ENST00000581021 ADGRF5Q8IZF2 1346 aa29.65■■■□□ 2.34
SS18-218ENST00000581021 AMOTL2Q9Y2J4 779 aa29.61■■■□□ 2.33
SS18-218ENST00000581021 TOM1O60784 492 aa29.59■■■□□ 2.33
SS18-218ENST00000581021 PIP4K2BP78356 416 aa29.58■■■□□ 2.33
SS18-218ENST00000581021 PIK3C2GO75747 1445 aa29.57■■■□□ 2.32
SS18-218ENST00000581021 TRIM26Q12899 539 aaPredicted RBP29.57■■■□□ 2.32
SS18-218ENST00000581021 NRXN1Q9ULB1 1477 aa29.55■■■□□ 2.32
SS18-218ENST00000581021 ASXL1Q8IXJ9 1541 aa29.55■■■□□ 2.32
SS18-218ENST00000581021 MYOM2P54296 1465 aa29.55■■■□□ 2.32
SS18-218ENST00000581021 SCAF1Q9H7N4 1312 aaKnown RBP29.53■■■□□ 2.32
SS18-218ENST00000581021 NCOA3Q9Y6Q9 1424 aa29.5■■■□□ 2.31
SS18-218ENST00000581021 PRAG1Q86YV5 1406 aa29.49■■■□□ 2.31
SS18-218ENST00000581021 MSH6P52701 1360 aa29.49■■■□□ 2.31
SS18-218ENST00000581021 DHX57Q6P158 1386 aaKnown RBP29.48■■■□□ 2.31
SS18-218ENST00000581021 ROBO2Q9HCK4 1378 aa29.48■■■□□ 2.31
SS18-218ENST00000581021 PTCH1Q13635 1447 aa29.46■■■□□ 2.31
SS18-218ENST00000581021 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.45■■■□□ 2.31
SS18-218ENST00000581021 HSPA1LP34931 641 aa29.45■■■□□ 2.31
SS18-218ENST00000581021 NALCNQ8IZF0 1738 aa29.42■■■□□ 2.3
SS18-218ENST00000581021 C14orf37Q86TY3 774 aa29.41■■■□□ 2.3
SS18-218ENST00000581021 TMEM132EQ6IEE7 984 aa29.4■■■□□ 2.3
SS18-218ENST00000581021 C14orf93Q9H972 538 aaKnown RBP29.4■■■□□ 2.3
SS18-218ENST00000581021 ADGRL3Q9HAR2 1447 aa29.39■■■□□ 2.3
SS18-218ENST00000581021 CFAP70Q5T0N1 1121 aa29.39■■■□□ 2.3
SS18-218ENST00000581021 DCAF11Q8TEB1 546 aa29.39■■■□□ 2.3
SS18-218ENST00000581021 C19orf44Q9H6X5 657 aa29.39■■■□□ 2.3
SS18-218ENST00000581021 TECPR2O15040 1411 aa29.38■■■□□ 2.29
SS18-218ENST00000581021 FAM135BQ49AJ0 1406 aa29.38■■■□□ 2.29
SS18-218ENST00000581021 ROBO1Q9Y6N7 1651 aa29.38■■■□□ 2.29
SS18-218ENST00000581021 LAMC1P11047 1609 aa29.38■■■□□ 2.29
SS18-218ENST00000581021 LRPPRCP42704 1394 aaKnown RBP29.38■■■□□ 2.29
SS18-218ENST00000581021 KDM2AQ9Y2K7 1162 aa29.36■■■□□ 2.29
SS18-218ENST00000581021 KNDC1Q76NI1 1749 aa29.35■■■□□ 2.29
SS18-218ENST00000581021 SLAIN2Q9P270 581 aa29.35■■■□□ 2.29
SS18-218ENST00000581021 DCCP43146 1447 aa29.35■■■□□ 2.29
SS18-218ENST00000581021 YTHDC2Q9H6S0 1430 aaKnown RBP29.35■■■□□ 2.29
SS18-218ENST00000581021 STK26Q9P289 416 aa29.34■■■□□ 2.29
SS18-218ENST00000581021 ADGRB1O14514 1584 aa29.34■■■□□ 2.29
SS18-218ENST00000581021 SIN3AQ96ST3 1273 aa29.33■■■□□ 2.29
SS18-218ENST00000581021 ABCC11Q96J66 1382 aa29.32■■■□□ 2.28
SS18-218ENST00000581021 CADPS2Q86UW7 1296 aa29.31■■■□□ 2.28
SS18-218ENST00000581021 PLEKHH1Q9ULM0 1364 aa29.3■■■□□ 2.28
SS18-218ENST00000581021 ATF3P18847 181 aa29.3■■■□□ 2.28
SS18-218ENST00000581021 MST1RQ04912 1400 aa29.29■■■□□ 2.28
SS18-218ENST00000581021 WAPLQ7Z5K2 1190 aa29.27■■■□□ 2.28
SS18-218ENST00000581021 STAC3Q96MF2 364 aa29.25■■■□□ 2.27
SS18-218ENST00000581021 CDC42BPGQ6DT37 1551 aa29.21■■■□□ 2.27
SS18-218ENST00000581021 NEUROD1Q13562 356 aa29.2■■■□□ 2.26
SS18-218ENST00000581021 BRINP3Q76B58 766 aa29.2■■■□□ 2.26
SS18-218ENST00000581021 L3MBTL2Q969R5 705 aa29.2■■■□□ 2.26
SS18-218ENST00000581021 DLC1Q96QB1 1528 aa29.2■■■□□ 2.26
SS18-218ENST00000581021 C1orf167Q5SNV9 1468 aa29.17■■■□□ 2.26
SS18-218ENST00000581021 COL16A1Q07092 1604 aaPredicted RBP29.17■■■□□ 2.26
SS18-218ENST00000581021 AHDC1Q5TGY3 1603 aaPredicted RBP29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms