RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TRPM2O94759 1503 aa22.24■■□□□ 1.15
SS18-212ENST00000579061 PLEKHG1Q9ULL1 1385 aa22.24■■□□□ 1.15
SS18-212ENST00000579061 SLC4A1APQ9BWU0 796 aaKnown RBP22.22■■□□□ 1.15
SS18-212ENST00000579061 LRRC7Q96NW7 1537 aa22.21■■□□□ 1.15
SS18-212ENST00000579061 UBAP1LF5GYI3 381 aa22.2■■□□□ 1.14
SS18-212ENST00000579061 PPP1R15AO75807 674 aaPredicted RBP22.2■■□□□ 1.14
SS18-212ENST00000579061 CLTCL1P53675 1640 aa22.2■■□□□ 1.14
SS18-212ENST00000579061 KIF1BO60333 1816 aa22.19■■□□□ 1.14
SS18-212ENST00000579061 SETD5Q9C0A6 1442 aa22.18■■□□□ 1.14
SS18-212ENST00000579061 SLC26A8Q96RN1 970 aa22.18■■□□□ 1.14
SS18-212ENST00000579061 KCNA6P17658 529 aa22.17■■□□□ 1.14
SS18-212ENST00000579061 TOM1O60784 492 aa22.16■■□□□ 1.14
SS18-212ENST00000579061 BCANQ96GW7 911 aa22.16■■□□□ 1.14
SS18-212ENST00000579061 NWD1Q149M9 1564 aa22.15■■□□□ 1.14
SS18-212ENST00000579061 DIP2AQ14689 1571 aa22.14■■□□□ 1.13
SS18-212ENST00000579061 TBX22Q9Y458 520 aa22.14■■□□□ 1.13
SS18-212ENST00000579061 CHD2O14647 1828 aaKnown RBP22.14■■□□□ 1.13
SS18-212ENST00000579061 XIRP1Q702N8 1843 aaKnown RBP22.13■■□□□ 1.13
SS18-212ENST00000579061 NKTRP30414 1462 aaKnown RBP22.12■■□□□ 1.13
SS18-212ENST00000579061 MPHOSPH9Q99550 1183 aa22.11■■□□□ 1.13
SS18-212ENST00000579061 ADAMTS13Q76LX8 1427 aa22.11■■□□□ 1.13
SS18-212ENST00000579061 ZNF326Q5BKZ1 582 aaKnown RBP22.1■■□□□ 1.13
SS18-212ENST00000579061 NUTM2DQ5VT03 806 aaPredicted RBP22.1■■□□□ 1.13
SS18-212ENST00000579061 PIK3R4Q99570 1358 aa22.09■■□□□ 1.13
SS18-212ENST00000579061 NEXMIFQ5QGS0 1516 aa22.08■■□□□ 1.13
SS18-212ENST00000579061 ALKQ9UM73 1620 aa22.08■■□□□ 1.13
SS18-212ENST00000579061 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.12
SS18-212ENST00000579061 SETBP1Q9Y6X0 1596 aa22.08■■□□□ 1.12
SS18-212ENST00000579061 TMEM94Q12767 1356 aa22.06■■□□□ 1.12
SS18-212ENST00000579061 PROSER2Q86WR7 435 aaPredicted RBP22.05■■□□□ 1.12
SS18-212ENST00000579061 SENP3Q9H4L4 574 aaPredicted RBP22.05■■□□□ 1.12
SS18-212ENST00000579061 NRXN3Q9Y4C0 1643 aa22.05■■□□□ 1.12
SS18-212ENST00000579061 RPGRIP1LQ68CZ1 1315 aa22.05■■□□□ 1.12
SS18-212ENST00000579061 FOXD1Q16676 465 aa22.04■■□□□ 1.12
SS18-212ENST00000579061 HRCP23327 699 aa22.03■■□□□ 1.12
SS18-212ENST00000579061 CCDC144AA2RUR9 1427 aa22.03■■□□□ 1.12
SS18-212ENST00000579061 PIP4K2BP78356 416 aa22.02■■□□□ 1.12
SS18-212ENST00000579061 VGFO15240 615 aaPredicted RBP22.01■■□□□ 1.11
SS18-212ENST00000579061 SCAF1Q9H7N4 1312 aaKnown RBP22.01■■□□□ 1.11
SS18-212ENST00000579061 PPLO60437 1756 aa22■■□□□ 1.11
SS18-212ENST00000579061 NCOA3Q9Y6Q9 1424 aa22■■□□□ 1.11
SS18-212ENST00000579061 SPATA31E1Q6ZUB1 1445 aa21.97■■□□□ 1.11
SS18-212ENST00000579061 XRN1Q8IZH2 1706 aaKnown RBP21.96■■□□□ 1.11
SS18-212ENST00000579061 PTPRUQ92729 1446 aa21.96■■□□□ 1.11
SS18-212ENST00000579061 AMOTL2Q9Y2J4 779 aa21.95■■□□□ 1.1
SS18-212ENST00000579061 MSH6P52701 1360 aa21.95■■□□□ 1.1
SS18-212ENST00000579061 HSPA1LP34931 641 aa21.94■■□□□ 1.1
SS18-212ENST00000579061 RBM33Q96EV2 1170 aaKnown RBP21.93■■□□□ 1.1
SS18-212ENST00000579061 SETD1AO15047 1707 aaKnown RBP21.92■■□□□ 1.1
SS18-212ENST00000579061 IFT172Q9UG01 1749 aa21.92■■□□□ 1.1
SS18-212ENST00000579061 METP08581 1390 aa21.92■■□□□ 1.1
SS18-212ENST00000579061 FAM135BQ49AJ0 1406 aa21.91■■□□□ 1.1
SS18-212ENST00000579061 ANKRD30BQ9BXX2 1392 aa21.91■■□□□ 1.1
SS18-212ENST00000579061 RGL3Q3MIN7 710 aa21.88■■□□□ 1.09
SS18-212ENST00000579061 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.87■■□□□ 1.09
SS18-212ENST00000579061 C19orf44Q9H6X5 657 aa21.87■■□□□ 1.09
SS18-212ENST00000579061 C14orf37Q86TY3 774 aa21.85■■□□□ 1.09
SS18-212ENST00000579061 PRAG1Q86YV5 1406 aa21.85■■□□□ 1.09
SS18-212ENST00000579061 ROBO1Q9Y6N7 1651 aa21.85■■□□□ 1.09
SS18-212ENST00000579061 SLAIN2Q9P270 581 aa21.84■■□□□ 1.09
SS18-212ENST00000579061 ADGRF5Q8IZF2 1346 aa21.83■■□□□ 1.09
SS18-212ENST00000579061 DCCP43146 1447 aa21.83■■□□□ 1.09
SS18-212ENST00000579061 CADPS2Q86UW7 1296 aa21.83■■□□□ 1.09
SS18-212ENST00000579061 PTCH1Q13635 1447 aa21.82■■□□□ 1.08
SS18-212ENST00000579061 ATF3P18847 181 aa21.81■■□□□ 1.08
SS18-212ENST00000579061 PIK3C2GO75747 1445 aa21.8■■□□□ 1.08
SS18-212ENST00000579061 MYOM2P54296 1465 aa21.79■■□□□ 1.08
SS18-212ENST00000579061 ADGRL3Q9HAR2 1447 aa21.79■■□□□ 1.08
SS18-212ENST00000579061 DISP3Q9P2K9 1392 aa21.78■■□□□ 1.08
SS18-212ENST00000579061 NRXN1Q9ULB1 1477 aa21.77■■□□□ 1.08
SS18-212ENST00000579061 NALCNQ8IZF0 1738 aa21.76■■□□□ 1.07
SS18-212ENST00000579061 ROBO2Q9HCK4 1378 aa21.74■■□□□ 1.07
SS18-212ENST00000579061 LAMC1P11047 1609 aa21.74■■□□□ 1.07
SS18-212ENST00000579061 TECPR2O15040 1411 aa21.73■■□□□ 1.07
SS18-212ENST00000579061 STAC3Q96MF2 364 aa21.73■■□□□ 1.07
SS18-212ENST00000579061 MED1Q15648 1581 aaPredicted RBP21.73■■□□□ 1.07
SS18-212ENST00000579061 LRPPRCP42704 1394 aaKnown RBP21.73■■□□□ 1.07
SS18-212ENST00000579061 PHLPP1O60346 1717 aa21.72■■□□□ 1.07
SS18-212ENST00000579061 KNDC1Q76NI1 1749 aa21.72■■□□□ 1.07
SS18-212ENST00000579061 ASXL1Q8IXJ9 1541 aa21.72■■□□□ 1.07
SS18-212ENST00000579061 C14orf93Q9H972 538 aaKnown RBP21.72■■□□□ 1.07
SS18-212ENST00000579061 ABCC11Q96J66 1382 aa21.71■■□□□ 1.07
SS18-212ENST00000579061 MST1RQ04912 1400 aa21.71■■□□□ 1.07
SS18-212ENST00000579061 AHDC1Q5TGY3 1603 aaPredicted RBP21.69■■□□□ 1.06
SS18-212ENST00000579061 YTHDC2Q9H6S0 1430 aaKnown RBP21.67■■□□□ 1.06
SS18-212ENST00000579061 TMEM132EQ6IEE7 984 aa21.67■■□□□ 1.06
SS18-212ENST00000579061 COL16A1Q07092 1604 aaPredicted RBP21.66■■□□□ 1.06
SS18-212ENST00000579061 BRINP3Q76B58 766 aa21.66■■□□□ 1.06
SS18-212ENST00000579061 SIRT1Q96EB6 747 aa21.66■■□□□ 1.06
SS18-212ENST00000579061 DHX57Q6P158 1386 aaKnown RBP21.65■■□□□ 1.06
SS18-212ENST00000579061 CFAP70Q5T0N1 1121 aa21.65■■□□□ 1.06
SS18-212ENST00000579061 STK26Q9P289 416 aa21.65■■□□□ 1.06
SS18-212ENST00000579061 DCAF11Q8TEB1 546 aa21.64■■□□□ 1.05
SS18-212ENST00000579061 CDC42BPGQ6DT37 1551 aa21.63■■□□□ 1.05
SS18-212ENST00000579061 NHSL1Q5SYE7 1610 aa21.62■■□□□ 1.05
SS18-212ENST00000579061 JCADQ9P266 1359 aa21.62■■□□□ 1.05
SS18-212ENST00000579061 C1orf167Q5SNV9 1468 aa21.62■■□□□ 1.05
SS18-212ENST00000579061 KDM2AQ9Y2K7 1162 aa21.61■■□□□ 1.05
SS18-212ENST00000579061 DLC1Q96QB1 1528 aa21.6■■□□□ 1.05
SS18-212ENST00000579061 ADGRB1O14514 1584 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms