RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PRAG1Q86YV5 1406 aa23.16■■□□□ 1.3
SS18-211ENST00000578954 ZFYVE9O95405 1425 aa23.15■■□□□ 1.3
SS18-211ENST00000578954 CEP170BQ9Y4F5 1589 aaPredicted RBP23.14■■□□□ 1.3
SS18-211ENST00000578954 NBPF8Q3BBV2 869 aa23.12■■□□□ 1.29
SS18-211ENST00000578954 ZNF326Q5BKZ1 582 aaKnown RBP23.11■■□□□ 1.29
SS18-211ENST00000578954 PLPPR3Q6T4P5 718 aa23.11■■□□□ 1.29
SS18-211ENST00000578954 STAG3Q9UJ98 1225 aa23.11■■□□□ 1.29
SS18-211ENST00000578954 SLIT1O75093 1534 aa23.09■■□□□ 1.29
SS18-211ENST00000578954 KDM2AQ9Y2K7 1162 aa23.09■■□□□ 1.29
SS18-211ENST00000578954 RALGAPBQ86X10 1494 aa23.09■■□□□ 1.29
SS18-211ENST00000578954 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
SS18-211ENST00000578954 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.29
SS18-211ENST00000578954 TMEM2Q9UHN6 1383 aa23.08■■□□□ 1.29
SS18-211ENST00000578954 TRPM1Q7Z4N2 1603 aa23.07■■□□□ 1.28
SS18-211ENST00000578954 PIK3C2GO75747 1445 aa23.07■■□□□ 1.28
SS18-211ENST00000578954 ADGRF5Q8IZF2 1346 aa23.06■■□□□ 1.28
SS18-211ENST00000578954 KIAA1210Q9ULL0 1709 aa23.05■■□□□ 1.28
SS18-211ENST00000578954 VGFO15240 615 aaPredicted RBP23.05■■□□□ 1.28
SS18-211ENST00000578954 THEMISQ8N1K5 641 aaPredicted RBP23.03■■□□□ 1.28
SS18-211ENST00000578954 GPRASP1Q5JY77 1395 aa23.02■■□□□ 1.28
SS18-211ENST00000578954 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.02■■□□□ 1.28
SS18-211ENST00000578954 HDGFP51858 240 aaKnown RBP23■■□□□ 1.27
SS18-211ENST00000578954 LAMC1P11047 1609 aa23■■□□□ 1.27
SS18-211ENST00000578954 SETBP1Q9Y6X0 1596 aa22.97■■□□□ 1.27
SS18-211ENST00000578954 C14orf93Q9H972 538 aaKnown RBP22.96■■□□□ 1.27
SS18-211ENST00000578954 NUTM2DQ5VT03 806 aaPredicted RBP22.95■■□□□ 1.26
SS18-211ENST00000578954 SCAF11Q99590 1463 aaKnown RBP22.95■■□□□ 1.26
SS18-211ENST00000578954 PLEKHG1Q9ULL1 1385 aa22.95■■□□□ 1.26
SS18-211ENST00000578954 NRXN3Q9Y4C0 1643 aa22.94■■□□□ 1.26
SS18-211ENST00000578954 ROCK2O75116 1388 aaKnown RBP22.94■■□□□ 1.26
SS18-211ENST00000578954 LTKP29376 864 aa22.93■■□□□ 1.26
SS18-211ENST00000578954 ADGRB1O14514 1584 aa22.93■■□□□ 1.26
SS18-211ENST00000578954 SETD1AO15047 1707 aaKnown RBP22.91■■□□□ 1.26
SS18-211ENST00000578954 ALKQ9UM73 1620 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 NBPF1Q3BBV0 1214 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 CFAP70Q5T0N1 1121 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 TXNDC2Q86VQ3 553 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 EID1Q9Y6B2 187 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 LMTK3Q96Q04 1460 aa22.91■■□□□ 1.26
SS18-211ENST00000578954 ASXL1Q8IXJ9 1541 aa22.89■■□□□ 1.26
SS18-211ENST00000578954 IQGAP1P46940 1657 aa22.89■■□□□ 1.25
SS18-211ENST00000578954 MED14O60244 1454 aa22.88■■□□□ 1.25
SS18-211ENST00000578954 CARD11Q9BXL7 1154 aa22.88■■□□□ 1.25
SS18-211ENST00000578954 ADAMTS13Q76LX8 1427 aa22.88■■□□□ 1.25
SS18-211ENST00000578954 DIP2AQ14689 1571 aa22.86■■□□□ 1.25
SS18-211ENST00000578954 ANKLE2Q86XL3 938 aa22.86■■□□□ 1.25
SS18-211ENST00000578954 POLR1AO95602 1720 aaPredicted RBP22.85■■□□□ 1.25
SS18-211ENST00000578954 USP47Q96K76 1375 aa22.85■■□□□ 1.25
SS18-211ENST00000578954 EIF4G2P78344 907 aaKnown RBP eCLIP22.84■■□□□ 1.25
SS18-211ENST00000578954 HSPA5P11021 654 aaKnown RBP22.8■■□□□ 1.24
SS18-211ENST00000578954 NPHP4O75161 1426 aaPredicted RBP22.79■■□□□ 1.24
SS18-211ENST00000578954 TBX22Q9Y458 520 aa22.78■■□□□ 1.24
SS18-211ENST00000578954 YTHDC2Q9H6S0 1430 aaKnown RBP22.77■■□□□ 1.24
SS18-211ENST00000578954 METP08581 1390 aa22.76■■□□□ 1.23
SS18-211ENST00000578954 LRPPRCP42704 1394 aaKnown RBP22.76■■□□□ 1.23
SS18-211ENST00000578954 TMEM132EQ6IEE7 984 aa22.76■■□□□ 1.23
SS18-211ENST00000578954 DLC1Q96QB1 1528 aa22.76■■□□□ 1.23
SS18-211ENST00000578954 EIF3AQ14152 1382 aaKnown RBP22.76■■□□□ 1.23
SS18-211ENST00000578954 PIK3R4Q99570 1358 aa22.76■■□□□ 1.23
SS18-211ENST00000578954 KNDC1Q76NI1 1749 aa22.75■■□□□ 1.23
SS18-211ENST00000578954 ZNF316A6NFI3 1004 aaPredicted RBP22.75■■□□□ 1.23
SS18-211ENST00000578954 TECPR2O15040 1411 aa22.74■■□□□ 1.23
SS18-211ENST00000578954 ABCC11Q96J66 1382 aa22.74■■□□□ 1.23
SS18-211ENST00000578954 ARHGEF28Q8N1W1 1705 aaKnown RBP22.74■■□□□ 1.23
SS18-211ENST00000578954 HSPA2P54652 639 aa22.73■■□□□ 1.23
SS18-211ENST00000578954 NCKAP5LQ9HCH0 1330 aa22.73■■□□□ 1.23
SS18-211ENST00000578954 BCANQ96GW7 911 aa22.72■■□□□ 1.23
SS18-211ENST00000578954 ST20-MTHFSA0A0A6YYL1 179 aa22.71■■□□□ 1.23
SS18-211ENST00000578954 SENP3Q9H4L4 574 aaPredicted RBP22.71■■□□□ 1.23
SS18-211ENST00000578954 CPS1P31327 1500 aa22.71■■□□□ 1.23
SS18-211ENST00000578954 STRCQ7RTU9 1775 aa22.71■■□□□ 1.23
SS18-211ENST00000578954 SLC26A8Q96RN1 970 aa22.7■■□□□ 1.22
SS18-211ENST00000578954 SBNO2Q9Y2G9 1366 aa22.7■■□□□ 1.22
SS18-211ENST00000578954 PTPRUQ92729 1446 aa22.7■■□□□ 1.22
SS18-211ENST00000578954 XRN1Q8IZH2 1706 aaKnown RBP22.68■■□□□ 1.22
SS18-211ENST00000578954 SIRT1Q96EB6 747 aa22.68■■□□□ 1.22
SS18-211ENST00000578954 TESK2Q96S53 571 aa22.68■■□□□ 1.22
SS18-211ENST00000578954 TRAK1Q9UPV9 953 aa22.68■■□□□ 1.22
SS18-211ENST00000578954 HIRIP3Q9BW71 556 aaPredicted RBP22.67■■□□□ 1.22
SS18-211ENST00000578954 FAM135BQ49AJ0 1406 aa22.66■■□□□ 1.22
SS18-211ENST00000578954 PTCH1Q13635 1447 aa22.65■■□□□ 1.22
SS18-211ENST00000578954 CENPJQ9HC77 1338 aaPredicted RBP22.65■■□□□ 1.22
SS18-211ENST00000578954 CHD2O14647 1828 aaKnown RBP22.65■■□□□ 1.22
SS18-211ENST00000578954 NWD1Q149M9 1564 aa22.64■■□□□ 1.22
SS18-211ENST00000578954 QRICH2Q9H0J4 1663 aa22.63■■□□□ 1.21
SS18-211ENST00000578954 STK26Q9P289 416 aa22.63■■□□□ 1.21
SS18-211ENST00000578954 SLC24A1O60721 1099 aa22.61■■□□□ 1.21
SS18-211ENST00000578954 AMOTL2Q9Y2J4 779 aa22.6■■□□□ 1.21
SS18-211ENST00000578954 ROBO2Q9HCK4 1378 aa22.6■■□□□ 1.21
SS18-211ENST00000578954 PRAM1Q96QH2 718 aa22.58■■□□□ 1.21
SS18-211ENST00000578954 CCDC7Q96M83 1385 aa22.58■■□□□ 1.21
SS18-211ENST00000578954 C11orf95C9JLR9 678 aaPredicted RBP22.57■■□□□ 1.2
SS18-211ENST00000578954 WASHC2AQ641Q2 1341 aa22.57■■□□□ 1.2
SS18-211ENST00000578954 DISP3Q9P2K9 1392 aa22.56■■□□□ 1.2
SS18-211ENST00000578954 PLEKHH1Q9ULM0 1364 aa22.56■■□□□ 1.2
SS18-211ENST00000578954 KCNA6P17658 529 aa22.56■■□□□ 1.2
SS18-211ENST00000578954 TMF1P82094 1093 aa22.55■■□□□ 1.2
SS18-211ENST00000578954 KIF7Q2M1P5 1343 aa22.55■■□□□ 1.2
SS18-211ENST00000578954 NKTRP30414 1462 aaKnown RBP22.54■■□□□ 1.2
SS18-211ENST00000578954 POGKQ9P215 609 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms