RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 TMEM131LA2VDJ0 1609 aa23.3■■□□□ 1.32
SF3B3-215ENST00000577085 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.3■■□□□ 1.32
SF3B3-215ENST00000577085 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
SF3B3-215ENST00000577085 LRRC7Q96NW7 1537 aa23.29■■□□□ 1.32
SF3B3-215ENST00000577085 STRCP1A6NGW2 1772 aa23.28■■□□□ 1.32
SF3B3-215ENST00000577085 MYO5BQ9ULV0 1848 aa23.27■■□□□ 1.32
SF3B3-215ENST00000577085 ZFYVE9O95405 1425 aa23.26■■□□□ 1.31
SF3B3-215ENST00000577085 PLEKHG1Q9ULL1 1385 aa23.26■■□□□ 1.31
SF3B3-215ENST00000577085 KCNA6P17658 529 aa23.24■■□□□ 1.31
SF3B3-215ENST00000577085 NUTM2DQ5VT03 806 aaPredicted RBP23.24■■□□□ 1.31
SF3B3-215ENST00000577085 SPHKAPQ2M3C7 1700 aa23.24■■□□□ 1.31
SF3B3-215ENST00000577085 ZNF326Q5BKZ1 582 aaKnown RBP23.23■■□□□ 1.31
SF3B3-215ENST00000577085 SLC4A1APQ9BWU0 796 aaKnown RBP23.21■■□□□ 1.31
SF3B3-215ENST00000577085 PROSER2Q86WR7 435 aaPredicted RBP23.2■■□□□ 1.3
SF3B3-215ENST00000577085 TMEM94Q12767 1356 aa23.16■■□□□ 1.3
SF3B3-215ENST00000577085 DISP3Q9P2K9 1392 aa23.16■■□□□ 1.3
SF3B3-215ENST00000577085 HSPA1LP34931 641 aa23.16■■□□□ 1.3
SF3B3-215ENST00000577085 TBX22Q9Y458 520 aa23.16■■□□□ 1.3
SF3B3-215ENST00000577085 TRPM2O94759 1503 aa23.16■■□□□ 1.3
SF3B3-215ENST00000577085 NKTRP30414 1462 aaKnown RBP23.15■■□□□ 1.3
SF3B3-215ENST00000577085 RBM33Q96EV2 1170 aaKnown RBP23.13■■□□□ 1.29
SF3B3-215ENST00000577085 CLTCL1P53675 1640 aa23.12■■□□□ 1.29
SF3B3-215ENST00000577085 DIP2AQ14689 1571 aa23.12■■□□□ 1.29
SF3B3-215ENST00000577085 NWD1Q149M9 1564 aa23.12■■□□□ 1.29
SF3B3-215ENST00000577085 ACIN1Q9UKV3 1341 aaKnown RBP23.09■■□□□ 1.29
SF3B3-215ENST00000577085 ALKQ9UM73 1620 aa23.09■■□□□ 1.29
SF3B3-215ENST00000577085 C14orf37Q86TY3 774 aa23.09■■□□□ 1.29
SF3B3-215ENST00000577085 XIRP1Q702N8 1843 aaKnown RBP23.09■■□□□ 1.29
SF3B3-215ENST00000577085 MSH6P52701 1360 aa23.09■■□□□ 1.29
SF3B3-215ENST00000577085 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
SF3B3-215ENST00000577085 KIF1BO60333 1816 aa23.08■■□□□ 1.29
SF3B3-215ENST00000577085 PIK3R4Q99570 1358 aa23.07■■□□□ 1.28
SF3B3-215ENST00000577085 CHD2O14647 1828 aaKnown RBP23.06■■□□□ 1.28
SF3B3-215ENST00000577085 FOXD1Q16676 465 aa23.05■■□□□ 1.28
SF3B3-215ENST00000577085 MPHOSPH9Q99550 1183 aa23.05■■□□□ 1.28
SF3B3-215ENST00000577085 SETD5Q9C0A6 1442 aa23.04■■□□□ 1.28
SF3B3-215ENST00000577085 VGFO15240 615 aaPredicted RBP23.02■■□□□ 1.28
SF3B3-215ENST00000577085 AMOTL2Q9Y2J4 779 aa23.02■■□□□ 1.28
SF3B3-215ENST00000577085 NEXMIFQ5QGS0 1516 aa23.02■■□□□ 1.28
SF3B3-215ENST00000577085 SETBP1Q9Y6X0 1596 aa23.01■■□□□ 1.27
SF3B3-215ENST00000577085 CCDC144AA2RUR9 1427 aa23.01■■□□□ 1.27
SF3B3-215ENST00000577085 RPGRIP1LQ68CZ1 1315 aa23■■□□□ 1.27
SF3B3-215ENST00000577085 FAM135BQ49AJ0 1406 aa22.99■■□□□ 1.27
SF3B3-215ENST00000577085 NCOA3Q9Y6Q9 1424 aa22.99■■□□□ 1.27
SF3B3-215ENST00000577085 ATF3P18847 181 aa22.97■■□□□ 1.27
SF3B3-215ENST00000577085 SLAIN2Q9P270 581 aa22.97■■□□□ 1.27
SF3B3-215ENST00000577085 NRXN3Q9Y4C0 1643 aa22.97■■□□□ 1.27
SF3B3-215ENST00000577085 C19orf44Q9H6X5 657 aa22.95■■□□□ 1.26
SF3B3-215ENST00000577085 PTPRUQ92729 1446 aa22.94■■□□□ 1.26
SF3B3-215ENST00000577085 METP08581 1390 aa22.94■■□□□ 1.26
SF3B3-215ENST00000577085 RAB3GAP2Q9H2M9 1393 aa22.94■■□□□ 1.26
SF3B3-215ENST00000577085 CADPS2Q86UW7 1296 aa22.94■■□□□ 1.26
SF3B3-215ENST00000577085 RGL3Q3MIN7 710 aa22.93■■□□□ 1.26
SF3B3-215ENST00000577085 ROBO1Q9Y6N7 1651 aa22.93■■□□□ 1.26
SF3B3-215ENST00000577085 PHF23Q9BUL5 403 aaPredicted RBP22.91■■□□□ 1.26
SF3B3-215ENST00000577085 MED1Q15648 1581 aaPredicted RBP22.9■■□□□ 1.26
SF3B3-215ENST00000577085 XRN1Q8IZH2 1706 aaKnown RBP22.89■■□□□ 1.26
SF3B3-215ENST00000577085 PPLO60437 1756 aa22.87■■□□□ 1.25
SF3B3-215ENST00000577085 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.87■■□□□ 1.25
SF3B3-215ENST00000577085 ILDR2Q71H61 639 aa22.86■■□□□ 1.25
SF3B3-215ENST00000577085 ANKRD30BQ9BXX2 1392 aa22.85■■□□□ 1.25
SF3B3-215ENST00000577085 SPATA31E1Q6ZUB1 1445 aa22.83■■□□□ 1.25
SF3B3-215ENST00000577085 DCCP43146 1447 aa22.82■■□□□ 1.24
SF3B3-215ENST00000577085 ADGRF5Q8IZF2 1346 aa22.81■■□□□ 1.24
SF3B3-215ENST00000577085 PHLPP1O60346 1717 aa22.8■■□□□ 1.24
SF3B3-215ENST00000577085 PTCH1Q13635 1447 aa22.79■■□□□ 1.24
SF3B3-215ENST00000577085 ADGRL3Q9HAR2 1447 aa22.79■■□□□ 1.24
SF3B3-215ENST00000577085 HRCP23327 699 aa22.78■■□□□ 1.24
SF3B3-215ENST00000577085 SETD1AO15047 1707 aaKnown RBP22.77■■□□□ 1.24
SF3B3-215ENST00000577085 ROBO2Q9HCK4 1378 aa22.76■■□□□ 1.23
SF3B3-215ENST00000577085 JCADQ9P266 1359 aa22.75■■□□□ 1.23
SF3B3-215ENST00000577085 IFT172Q9UG01 1749 aa22.74■■□□□ 1.23
SF3B3-215ENST00000577085 BRINP3Q76B58 766 aa22.74■■□□□ 1.23
SF3B3-215ENST00000577085 STK26Q9P289 416 aa22.74■■□□□ 1.23
SF3B3-215ENST00000577085 NALCNQ8IZF0 1738 aa22.73■■□□□ 1.23
SF3B3-215ENST00000577085 MST1RQ04912 1400 aa22.73■■□□□ 1.23
SF3B3-215ENST00000577085 SOCS7O14512 581 aa22.72■■□□□ 1.23
SF3B3-215ENST00000577085 PIK3C2GO75747 1445 aa22.72■■□□□ 1.23
SF3B3-215ENST00000577085 PRAG1Q86YV5 1406 aa22.71■■□□□ 1.23
SF3B3-215ENST00000577085 ASXL1Q8IXJ9 1541 aa22.7■■□□□ 1.22
SF3B3-215ENST00000577085 COL16A1Q07092 1604 aaPredicted RBP22.69■■□□□ 1.22
SF3B3-215ENST00000577085 AHDC1Q5TGY3 1603 aaPredicted RBP22.69■■□□□ 1.22
SF3B3-215ENST00000577085 TMEM132EQ6IEE7 984 aa22.69■■□□□ 1.22
SF3B3-215ENST00000577085 MYOM2P54296 1465 aa22.67■■□□□ 1.22
SF3B3-215ENST00000577085 LRPPRCP42704 1394 aaKnown RBP22.67■■□□□ 1.22
SF3B3-215ENST00000577085 SPATA31A6Q5VVP1 1343 aa22.65■■□□□ 1.22
SF3B3-215ENST00000577085 MEX3CQ5U5Q3 659 aaKnown RBP22.65■■□□□ 1.22
SF3B3-215ENST00000577085 C14orf93Q9H972 538 aaKnown RBP22.65■■□□□ 1.22
SF3B3-215ENST00000577085 C1orf167Q5SNV9 1468 aa22.65■■□□□ 1.22
SF3B3-215ENST00000577085 KDM2AQ9Y2K7 1162 aa22.64■■□□□ 1.21
SF3B3-215ENST00000577085 YTHDC2Q9H6S0 1430 aaKnown RBP22.64■■□□□ 1.21
SF3B3-215ENST00000577085 DHX57Q6P158 1386 aaKnown RBP22.63■■□□□ 1.21
SF3B3-215ENST00000577085 ABCC11Q96J66 1382 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 CFAP70Q5T0N1 1121 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 WAPLQ7Z5K2 1190 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 DCAF11Q8TEB1 546 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 LAMC1P11047 1609 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 TECPR2O15040 1411 aa22.63■■□□□ 1.21
SF3B3-215ENST00000577085 NRXN1Q9ULB1 1477 aa22.62■■□□□ 1.21
SF3B3-215ENST00000577085 LRRC59Q96AG4 307 aaKnown RBP22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms