RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NPM1P06748 294 aaKnown RBP eCLIP13.58□□□□□ -0.24
VPS53-220ENST00000576149 SCAF11Q99590 1463 aaKnown RBP13.58□□□□□ -0.24
VPS53-220ENST00000576149 KCNA4P22459 653 aa13.57□□□□□ -0.24
VPS53-220ENST00000576149 EFCAB6Q5THR3 1501 aa13.56□□□□□ -0.24
VPS53-220ENST00000576149 TULP1O00294 542 aaPredicted RBP13.55□□□□□ -0.24
VPS53-220ENST00000576149 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
VPS53-220ENST00000576149 LMTK2Q8IWU2 1503 aa13.55□□□□□ -0.24
VPS53-220ENST00000576149 KIAA1210Q9ULL0 1709 aa13.55□□□□□ -0.24
VPS53-220ENST00000576149 CD109Q6YHK3 1445 aa13.54□□□□□ -0.24
VPS53-220ENST00000576149 INSRP06213 1382 aa13.54□□□□□ -0.24
VPS53-220ENST00000576149 SENP3-EIF4A1A0A087X0R7 540 aa13.54□□□□□ -0.24
VPS53-220ENST00000576149 MYOM2P54296 1465 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 CDCA8Q53HL2 280 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 CFAP74Q9C0B2 1584 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 UGGT1Q9NYU2 1555 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 POGZQ7Z3K3 1410 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 B4GALNT3Q6L9W6 998 aa13.53□□□□□ -0.24
VPS53-220ENST00000576149 PPRC1Q5VV67 1664 aaKnown RBP13.52□□□□□ -0.24
VPS53-220ENST00000576149 ZMYM4Q5VZL5 1548 aa13.52□□□□□ -0.24
VPS53-220ENST00000576149 EIF3AQ14152 1382 aaKnown RBP13.52□□□□□ -0.25
VPS53-220ENST00000576149 MAP3K4Q9Y6R4 1608 aa13.52□□□□□ -0.25
VPS53-220ENST00000576149 MLH3Q9UHC1 1453 aa13.52□□□□□ -0.25
VPS53-220ENST00000576149 SYNMO15061 1565 aa13.51□□□□□ -0.25
VPS53-220ENST00000576149 PDE3BQ13370 1112 aa13.5□□□□□ -0.25
VPS53-220ENST00000576149 KIF1BO60333 1816 aa13.5□□□□□ -0.25
VPS53-220ENST00000576149 BLMP54132 1417 aaPredicted RBP13.5□□□□□ -0.25
VPS53-220ENST00000576149 KNSTRNQ9Y448 316 aa13.5□□□□□ -0.25
VPS53-220ENST00000576149 ADGRF5Q8IZF2 1346 aa13.49□□□□□ -0.25
VPS53-220ENST00000576149 FRMPD1Q5SYB0 1578 aa13.49□□□□□ -0.25
VPS53-220ENST00000576149 ABCA6Q8N139 1617 aa13.49□□□□□ -0.25
VPS53-220ENST00000576149 CFAP70Q5T0N1 1121 aa13.49□□□□□ -0.25
VPS53-220ENST00000576149 IFT172Q9UG01 1749 aa13.48□□□□□ -0.25
VPS53-220ENST00000576149 NRXN1Q9ULB1 1477 aa13.48□□□□□ -0.25
VPS53-220ENST00000576149 HECW2Q9P2P5 1572 aa13.48□□□□□ -0.25
VPS53-220ENST00000576149 MROH2AA6NES4 1674 aa13.47□□□□□ -0.25
VPS53-220ENST00000576149 ADGRB3O60242 1522 aa13.46□□□□□ -0.25
VPS53-220ENST00000576149 NPATQ14207 1427 aa13.46□□□□□ -0.25
VPS53-220ENST00000576149 MYOM1P52179 1685 aa13.46□□□□□ -0.25
VPS53-220ENST00000576149 NPC1L1Q9UHC9 1359 aa13.46□□□□□ -0.26
VPS53-220ENST00000576149 ASXL1Q8IXJ9 1541 aa13.46□□□□□ -0.26
VPS53-220ENST00000576149 SALL2Q9Y467 1007 aaPredicted RBP13.45□□□□□ -0.26
VPS53-220ENST00000576149 PPP2R1AP30153 589 aa13.45□□□□□ -0.26
VPS53-220ENST00000576149 NEO1Q92859 1461 aa13.45□□□□□ -0.26
VPS53-220ENST00000576149 KDM5AP29375 1690 aaKnown RBP13.44□□□□□ -0.26
VPS53-220ENST00000576149 ERVK-7P63135 1459 aa13.44□□□□□ -0.26
VPS53-220ENST00000576149 GGT6Q6P531 493 aa13.44□□□□□ -0.26
VPS53-220ENST00000576149 NOS1P29475 1434 aa13.44□□□□□ -0.26
VPS53-220ENST00000576149 RRP1P56182 461 aaKnown RBP13.43□□□□□ -0.26
VPS53-220ENST00000576149 RCAN3Q9UKA8 241 aa13.43□□□□□ -0.26
VPS53-220ENST00000576149 ABCC3O15438 1527 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 SETBP1Q9Y6X0 1596 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 MYO3AQ8NEV4 1616 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 CCDC136Q96JN2 1154 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 ADAMTS8Q9UP79 889 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 SBNO2Q9Y2G9 1366 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 PIK3C2GO75747 1445 aa13.42□□□□□ -0.26
VPS53-220ENST00000576149 CDCA7LQ96GN5 454 aa13.41□□□□□ -0.26
VPS53-220ENST00000576149 FANCIQ9NVI1 1328 aa13.41□□□□□ -0.26
VPS53-220ENST00000576149 RAPGEF3O95398 923 aa13.41□□□□□ -0.26
VPS53-220ENST00000576149 CHGAP10645 457 aaKnown RBP13.41□□□□□ -0.26
VPS53-220ENST00000576149 SENP3Q9H4L4 574 aaPredicted RBP13.41□□□□□ -0.26
VPS53-220ENST00000576149 RPGRIP1LQ68CZ1 1315 aa13.4□□□□□ -0.26
VPS53-220ENST00000576149 HOMEZQ8IX15 550 aa13.4□□□□□ -0.26
VPS53-220ENST00000576149 ANP32EQ9BTT0 268 aa13.4□□□□□ -0.26
VPS53-220ENST00000576149 C14orf93Q9H972 538 aaKnown RBP13.4□□□□□ -0.26
VPS53-220ENST00000576149 PPLO60437 1756 aa13.39□□□□□ -0.27
VPS53-220ENST00000576149 WDR43Q15061 677 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS53-220ENST00000576149 CAMSAP1Q5T5Y3 1602 aa13.38□□□□□ -0.27
VPS53-220ENST00000576149 DIP2CQ9Y2E4 1556 aa13.38□□□□□ -0.27
VPS53-220ENST00000576149 CENPJQ9HC77 1338 aaPredicted RBP13.38□□□□□ -0.27
VPS53-220ENST00000576149 ADGRB1O14514 1584 aa13.37□□□□□ -0.27
VPS53-220ENST00000576149 CARD14Q9BXL6 1004 aa13.37□□□□□ -0.27
VPS53-220ENST00000576149 CFAP65Q6ZU64 1925 aaKnown RBP13.36□□□□□ -0.27
VPS53-220ENST00000576149 PIK3C2BO00750 1634 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 ARHGAP31Q2M1Z3 1444 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 EXOC6Q8TAG9 804 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 TAOK2Q9UL54 1235 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 TRAK1Q9UPV9 953 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 RICTORQ6R327 1708 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 SIGLEC1Q9BZZ2 1709 aa13.35□□□□□ -0.27
VPS53-220ENST00000576149 PLEKHH1Q9ULM0 1364 aa13.34□□□□□ -0.27
VPS53-220ENST00000576149 MSH5O43196 834 aa13.34□□□□□ -0.27
VPS53-220ENST00000576149 ZNF521Q96K83 1311 aa13.34□□□□□ -0.27
VPS53-220ENST00000576149 PODXL2Q9NZ53 605 aa13.33□□□□□ -0.28
VPS53-220ENST00000576149 ZC3H13Q5T200 1668 aaKnown RBP13.33□□□□□ -0.28
VPS53-220ENST00000576149 TMEM132EQ6IEE7 984 aa13.32□□□□□ -0.28
VPS53-220ENST00000576149 VGFO15240 615 aaPredicted RBP13.32□□□□□ -0.28
VPS53-220ENST00000576149 QRICH2Q9H0J4 1663 aa13.32□□□□□ -0.28
VPS53-220ENST00000576149 NEXMIFQ5QGS0 1516 aa13.31□□□□□ -0.28
VPS53-220ENST00000576149 YEATS2Q9ULM3 1422 aa13.31□□□□□ -0.28
VPS53-220ENST00000576149 GLI2P10070 1586 aa13.31□□□□□ -0.28
VPS53-220ENST00000576149 DUSP27Q5VZP5 1158 aa13.3□□□□□ -0.28
VPS53-220ENST00000576149 GOLGA2Q08379 1002 aa13.3□□□□□ -0.28
VPS53-220ENST00000576149 IDI1Q13907 227 aa13.29□□□□□ -0.28
VPS53-220ENST00000576149 SLC52A1Q9NWF4 448 aa13.29□□□□□ -0.28
VPS53-220ENST00000576149 PLIN1O60240 522 aa13.29□□□□□ -0.28
VPS53-220ENST00000576149 PUS7Q96PZ0 661 aaKnown RBP13.28□□□□□ -0.28
VPS53-220ENST00000576149 SLC12A5Q9H2X9 1139 aa13.28□□□□□ -0.28
VPS53-220ENST00000576149 POLR3AO14802 1390 aaPredicted RBP13.28□□□□□ -0.28
VPS53-220ENST00000576149 ZFYVE9O95405 1425 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms