RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.49■■■□□ 2.47
CLK3-225ENST00000569063 SLC26A8Q96RN1 970 aa30.48■■■□□ 2.47
CLK3-225ENST00000569063 PLEKHG1Q9ULL1 1385 aa30.48■■■□□ 2.47
CLK3-225ENST00000569063 TOM1O60784 492 aa30.46■■■□□ 2.47
CLK3-225ENST00000569063 PPP1R15AO75807 674 aaPredicted RBP30.46■■■□□ 2.47
CLK3-225ENST00000569063 BCANQ96GW7 911 aa30.44■■■□□ 2.46
CLK3-225ENST00000569063 KCNA6P17658 529 aa30.43■■■□□ 2.46
CLK3-225ENST00000569063 TRPM2O94759 1503 aa30.42■■■□□ 2.46
CLK3-225ENST00000569063 SLC4A1APQ9BWU0 796 aaKnown RBP30.42■■■□□ 2.46
CLK3-225ENST00000569063 CLTCL1P53675 1640 aa30.37■■■□□ 2.45
CLK3-225ENST00000569063 NUTM2DQ5VT03 806 aaPredicted RBP30.37■■■□□ 2.45
CLK3-225ENST00000569063 TBX22Q9Y458 520 aa30.37■■■□□ 2.45
CLK3-225ENST00000569063 SENP3Q9H4L4 574 aaPredicted RBP30.35■■■□□ 2.45
CLK3-225ENST00000569063 ALKQ9UM73 1620 aa30.35■■■□□ 2.45
CLK3-225ENST00000569063 NWD1Q149M9 1564 aa30.34■■■□□ 2.45
CLK3-225ENST00000569063 PIP4K2BP78356 416 aa30.34■■■□□ 2.45
CLK3-225ENST00000569063 ADAMTS13Q76LX8 1427 aa30.33■■■□□ 2.45
CLK3-225ENST00000569063 ACIN1Q9UKV3 1341 aaKnown RBP30.32■■■□□ 2.44
CLK3-225ENST00000569063 ZNF326Q5BKZ1 582 aaKnown RBP30.32■■■□□ 2.44
CLK3-225ENST00000569063 NKTRP30414 1462 aaKnown RBP30.31■■■□□ 2.44
CLK3-225ENST00000569063 XIRP1Q702N8 1843 aaKnown RBP30.31■■■□□ 2.44
CLK3-225ENST00000569063 SETD5Q9C0A6 1442 aa30.3■■■□□ 2.44
CLK3-225ENST00000569063 SCAF1Q9H7N4 1312 aaKnown RBP30.3■■■□□ 2.44
CLK3-225ENST00000569063 DIP2AQ14689 1571 aa30.3■■■□□ 2.44
CLK3-225ENST00000569063 TMEM94Q12767 1356 aa30.29■■■□□ 2.44
CLK3-225ENST00000569063 PROSER2Q86WR7 435 aaPredicted RBP30.29■■■□□ 2.44
CLK3-225ENST00000569063 MPHOSPH9Q99550 1183 aa30.28■■■□□ 2.44
CLK3-225ENST00000569063 CHD2O14647 1828 aaKnown RBP30.27■■■□□ 2.44
CLK3-225ENST00000569063 KIF1BO60333 1816 aa30.27■■■□□ 2.44
CLK3-225ENST00000569063 PIK3R4Q99570 1358 aa30.26■■■□□ 2.43
CLK3-225ENST00000569063 NEXMIFQ5QGS0 1516 aa30.24■■■□□ 2.43
CLK3-225ENST00000569063 FOXD1Q16676 465 aa30.24■■■□□ 2.43
CLK3-225ENST00000569063 SETBP1Q9Y6X0 1596 aa30.23■■■□□ 2.43
CLK3-225ENST00000569063 HSPA1LP34931 641 aa30.22■■■□□ 2.43
CLK3-225ENST00000569063 RBM33Q96EV2 1170 aaKnown RBP30.21■■■□□ 2.43
CLK3-225ENST00000569063 NRXN3Q9Y4C0 1643 aa30.2■■■□□ 2.43
CLK3-225ENST00000569063 RAB3GAP2Q9H2M9 1393 aa30.18■■■□□ 2.42
CLK3-225ENST00000569063 RPGRIP1LQ68CZ1 1315 aa30.18■■■□□ 2.42
CLK3-225ENST00000569063 NCOA3Q9Y6Q9 1424 aa30.16■■■□□ 2.42
CLK3-225ENST00000569063 VGFO15240 615 aaPredicted RBP30.15■■■□□ 2.42
CLK3-225ENST00000569063 CCDC144AA2RUR9 1427 aa30.14■■■□□ 2.42
CLK3-225ENST00000569063 AMOTL2Q9Y2J4 779 aa30.14■■■□□ 2.42
CLK3-225ENST00000569063 PTPRUQ92729 1446 aa30.13■■■□□ 2.41
CLK3-225ENST00000569063 MSH6P52701 1360 aa30.13■■■□□ 2.41
CLK3-225ENST00000569063 METP08581 1390 aa30.1■■■□□ 2.41
CLK3-225ENST00000569063 FAM135BQ49AJ0 1406 aa30.1■■■□□ 2.41
CLK3-225ENST00000569063 SPATA31E1Q6ZUB1 1445 aa30.07■■■□□ 2.4
CLK3-225ENST00000569063 HRCP23327 699 aa30.07■■■□□ 2.4
CLK3-225ENST00000569063 PPLO60437 1756 aa30.06■■■□□ 2.4
CLK3-225ENST00000569063 XRN1Q8IZH2 1706 aaKnown RBP30.05■■■□□ 2.4
CLK3-225ENST00000569063 DISP3Q9P2K9 1392 aa30.05■■■□□ 2.4
CLK3-225ENST00000569063 SLAIN2Q9P270 581 aa30.03■■■□□ 2.4
CLK3-225ENST00000569063 C14orf37Q86TY3 774 aa30.02■■■□□ 2.4
CLK3-225ENST00000569063 C19orf44Q9H6X5 657 aa30.02■■■□□ 2.4
CLK3-225ENST00000569063 RGL3Q3MIN7 710 aa30.01■■■□□ 2.39
CLK3-225ENST00000569063 SETD1AO15047 1707 aaKnown RBP29.98■■■□□ 2.39
CLK3-225ENST00000569063 ANKRD30BQ9BXX2 1392 aa29.98■■■□□ 2.39
CLK3-225ENST00000569063 ROBO1Q9Y6N7 1651 aa29.98■■■□□ 2.39
CLK3-225ENST00000569063 CADPS2Q86UW7 1296 aa29.97■■■□□ 2.39
CLK3-225ENST00000569063 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.96■■■□□ 2.39
CLK3-225ENST00000569063 ATF3P18847 181 aa29.95■■■□□ 2.39
CLK3-225ENST00000569063 ADGRF5Q8IZF2 1346 aa29.95■■■□□ 2.38
CLK3-225ENST00000569063 IFT172Q9UG01 1749 aa29.93■■■□□ 2.38
CLK3-225ENST00000569063 DCCP43146 1447 aa29.92■■■□□ 2.38
CLK3-225ENST00000569063 PRAG1Q86YV5 1406 aa29.9■■■□□ 2.38
CLK3-225ENST00000569063 PTCH1Q13635 1447 aa29.89■■■□□ 2.38
CLK3-225ENST00000569063 MED1Q15648 1581 aaPredicted RBP29.88■■■□□ 2.37
CLK3-225ENST00000569063 PIK3C2GO75747 1445 aa29.86■■■□□ 2.37
CLK3-225ENST00000569063 ADGRL3Q9HAR2 1447 aa29.86■■■□□ 2.37
CLK3-225ENST00000569063 ROBO2Q9HCK4 1378 aa29.85■■■□□ 2.37
CLK3-225ENST00000569063 ILDR2Q71H61 639 aa29.81■■■□□ 2.36
CLK3-225ENST00000569063 MYOM2P54296 1465 aa29.8■■■□□ 2.36
CLK3-225ENST00000569063 NRXN1Q9ULB1 1477 aa29.8■■■□□ 2.36
CLK3-225ENST00000569063 MST1RQ04912 1400 aa29.79■■■□□ 2.36
CLK3-225ENST00000569063 NALCNQ8IZF0 1738 aa29.79■■■□□ 2.36
CLK3-225ENST00000569063 PHLPP1O60346 1717 aa29.79■■■□□ 2.36
CLK3-225ENST00000569063 BRINP3Q76B58 766 aa29.77■■■□□ 2.36
CLK3-225ENST00000569063 C14orf93Q9H972 538 aaKnown RBP29.76■■■□□ 2.35
CLK3-225ENST00000569063 TECPR2O15040 1411 aa29.76■■■□□ 2.35
CLK3-225ENST00000569063 LRPPRCP42704 1394 aaKnown RBP29.76■■■□□ 2.35
CLK3-225ENST00000569063 TMEM132EQ6IEE7 984 aa29.74■■■□□ 2.35
CLK3-225ENST00000569063 ASXL1Q8IXJ9 1541 aa29.74■■■□□ 2.35
CLK3-225ENST00000569063 ABCC11Q96J66 1382 aa29.74■■■□□ 2.35
CLK3-225ENST00000569063 AHDC1Q5TGY3 1603 aaPredicted RBP29.74■■■□□ 2.35
CLK3-225ENST00000569063 COL16A1Q07092 1604 aaPredicted RBP29.72■■■□□ 2.35
CLK3-225ENST00000569063 STK26Q9P289 416 aa29.72■■■□□ 2.35
CLK3-225ENST00000569063 JCADQ9P266 1359 aa29.7■■■□□ 2.35
CLK3-225ENST00000569063 CFAP70Q5T0N1 1121 aa29.69■■■□□ 2.34
CLK3-225ENST00000569063 STAC3Q96MF2 364 aa29.69■■■□□ 2.34
CLK3-225ENST00000569063 LAMC1P11047 1609 aa29.69■■■□□ 2.34
CLK3-225ENST00000569063 YTHDC2Q9H6S0 1430 aaKnown RBP29.69■■■□□ 2.34
CLK3-225ENST00000569063 PHF23Q9BUL5 403 aaPredicted RBP29.68■■■□□ 2.34
CLK3-225ENST00000569063 KNDC1Q76NI1 1749 aa29.68■■■□□ 2.34
CLK3-225ENST00000569063 C1orf167Q5SNV9 1468 aa29.67■■■□□ 2.34
CLK3-225ENST00000569063 DCAF11Q8TEB1 546 aa29.66■■■□□ 2.34
CLK3-225ENST00000569063 SIRT1Q96EB6 747 aa29.66■■■□□ 2.34
CLK3-225ENST00000569063 WAPLQ7Z5K2 1190 aa29.65■■■□□ 2.34
CLK3-225ENST00000569063 DHX57Q6P158 1386 aaKnown RBP29.64■■■□□ 2.34
CLK3-225ENST00000569063 KDM2AQ9Y2K7 1162 aa29.62■■■□□ 2.33
CLK3-225ENST00000569063 CDC42BPGQ6DT37 1551 aa29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms