RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PPP1R15AO75807 674 aaPredicted RBP25.54■■□□□ 1.68
CLK3-223ENST00000568488 SLC52A1Q9NWF4 448 aa25.54■■□□□ 1.68
CLK3-223ENST00000568488 ABCC5O15440 1437 aa25.54■■□□□ 1.68
CLK3-223ENST00000568488 COL16A1Q07092 1604 aaPredicted RBP25.53■■□□□ 1.68
CLK3-223ENST00000568488 CHIC2Q9UKJ5 165 aa25.52■■□□□ 1.68
CLK3-223ENST00000568488 ADGRB3O60242 1522 aa25.51■■□□□ 1.67
CLK3-223ENST00000568488 NUTM2BA6NNL0 878 aaPredicted RBP25.5■■□□□ 1.67
CLK3-223ENST00000568488 NUTM2EB1AL46 878 aaPredicted RBP25.5■■□□□ 1.67
CLK3-223ENST00000568488 HDGFP51858 240 aaKnown RBP25.5■■□□□ 1.67
CLK3-223ENST00000568488 FGD6Q6ZV73 1430 aa25.5■■□□□ 1.67
CLK3-223ENST00000568488 NUTM2AQ8IVF1 878 aaPredicted RBP25.5■■□□□ 1.67
CLK3-223ENST00000568488 NOS1P29475 1434 aa25.49■■□□□ 1.67
CLK3-223ENST00000568488 VPS8Q8N3P4 1428 aa25.49■■□□□ 1.67
CLK3-223ENST00000568488 LMTK2Q8IWU2 1503 aa25.48■■□□□ 1.67
CLK3-223ENST00000568488 ATF3P18847 181 aa25.48■■□□□ 1.67
CLK3-223ENST00000568488 CADPS2Q86UW7 1296 aa25.47■■□□□ 1.67
CLK3-223ENST00000568488 PLEKHG1Q9ULL1 1385 aa25.46■■□□□ 1.67
CLK3-223ENST00000568488 CHD2O14647 1828 aaKnown RBP25.45■■□□□ 1.66
CLK3-223ENST00000568488 TBX22Q9Y458 520 aa25.45■■□□□ 1.66
CLK3-223ENST00000568488 C19orf44Q9H6X5 657 aa25.44■■□□□ 1.66
CLK3-223ENST00000568488 CROCC2H7BZ55 1655 aa25.44■■□□□ 1.66
CLK3-223ENST00000568488 DAPK1P53355 1430 aa25.44■■□□□ 1.66
CLK3-223ENST00000568488 RIMS2Q9UQ26 1411 aa25.44■■□□□ 1.66
CLK3-223ENST00000568488 ANKRD30AQ9BXX3 1397 aa25.44■■□□□ 1.66
CLK3-223ENST00000568488 CHGAP10645 457 aaKnown RBP25.43■■□□□ 1.66
CLK3-223ENST00000568488 NCOA3Q9Y6Q9 1424 aa25.43■■□□□ 1.66
CLK3-223ENST00000568488 ZFYVE9O95405 1425 aa25.41■■□□□ 1.66
CLK3-223ENST00000568488 NUTM2DQ5VT03 806 aaPredicted RBP25.41■■□□□ 1.66
CLK3-223ENST00000568488 PTPN23Q9H3S7 1636 aa25.41■■□□□ 1.66
CLK3-223ENST00000568488 AFF2P51816 1311 aa25.39■■□□□ 1.66
CLK3-223ENST00000568488 SHPRHQ149N8 1683 aa25.39■■□□□ 1.65
CLK3-223ENST00000568488 AHDC1Q5TGY3 1603 aaPredicted RBP25.38■■□□□ 1.65
CLK3-223ENST00000568488 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.38■■□□□ 1.65
CLK3-223ENST00000568488 BRINP3Q76B58 766 aa25.37■■□□□ 1.65
CLK3-223ENST00000568488 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.36■■□□□ 1.65
CLK3-223ENST00000568488 CDK12Q9NYV4 1490 aaPredicted RBP25.35■■□□□ 1.65
CLK3-223ENST00000568488 MYO5BQ9ULV0 1848 aa25.34■■□□□ 1.65
CLK3-223ENST00000568488 QTRT2Q9H974 415 aaKnown RBP25.33■■□□□ 1.65
CLK3-223ENST00000568488 APLP2Q06481 763 aa25.32■■□□□ 1.64
CLK3-223ENST00000568488 C8orf37Q96NL8 207 aa25.32■■□□□ 1.64
CLK3-223ENST00000568488 AMOTL2Q9Y2J4 779 aa25.32■■□□□ 1.64
CLK3-223ENST00000568488 LOC105371045A0A1W2PR82 267 aa25.31■■□□□ 1.64
CLK3-223ENST00000568488 GCC2Q8IWJ2 1684 aa25.31■■□□□ 1.64
CLK3-223ENST00000568488 ADAMTS13Q76LX8 1427 aa25.3■■□□□ 1.64
CLK3-223ENST00000568488 RPRD2Q5VT52 1461 aaKnown RBP25.3■■□□□ 1.64
CLK3-223ENST00000568488 RBM6P78332 1123 aaKnown RBP25.29■■□□□ 1.64
CLK3-223ENST00000568488 TMEM131LA2VDJ0 1609 aa25.29■■□□□ 1.64
CLK3-223ENST00000568488 DIP2AQ14689 1571 aa25.28■■□□□ 1.64
CLK3-223ENST00000568488 PIK3R4Q99570 1358 aa25.28■■□□□ 1.64
CLK3-223ENST00000568488 LRRC59Q96AG4 307 aaKnown RBP25.27■■□□□ 1.64
CLK3-223ENST00000568488 RGS12O14924 1447 aa25.27■■□□□ 1.64
CLK3-223ENST00000568488 SRCAPQ6ZRS2 3230 aa25.25■■□□□ 1.63
CLK3-223ENST00000568488 SETD5Q9C0A6 1442 aa25.23■■□□□ 1.63
CLK3-223ENST00000568488 ANKRD50Q9ULJ7 1429 aa25.22■■□□□ 1.63
CLK3-223ENST00000568488 DDX17Q92841 729 aaKnown RBP25.22■■□□□ 1.63
CLK3-223ENST00000568488 NGLY1Q96IV0 654 aa25.22■■□□□ 1.63
CLK3-223ENST00000568488 ASXL1Q8IXJ9 1541 aa25.22■■□□□ 1.63
CLK3-223ENST00000568488 PTPRUQ92729 1446 aa25.21■■□□□ 1.63
CLK3-223ENST00000568488 ADAMTS2O95450 1211 aa25.2■■□□□ 1.62
CLK3-223ENST00000568488 FAM50AQ14320 339 aaKnown RBP25.2■■□□□ 1.62
CLK3-223ENST00000568488 TRPM2O94759 1503 aa25.19■■□□□ 1.62
CLK3-223ENST00000568488 ADGRL2O95490 1459 aa25.17■■□□□ 1.62
CLK3-223ENST00000568488 DCCP43146 1447 aa25.17■■□□□ 1.62
CLK3-223ENST00000568488 MST1RQ04912 1400 aa25.16■■□□□ 1.62
CLK3-223ENST00000568488 FOXD1Q16676 465 aa25.16■■□□□ 1.62
CLK3-223ENST00000568488 ZRANB1Q9UGI0 708 aa25.16■■□□□ 1.62
CLK3-223ENST00000568488 PNPLA6Q8IY17 1366 aa25.16■■□□□ 1.62
CLK3-223ENST00000568488 ATAD2Q6PL18 1390 aa25.15■■□□□ 1.62
CLK3-223ENST00000568488 NHSL1Q5SYE7 1610 aa25.12■■□□□ 1.61
CLK3-223ENST00000568488 USP21Q9UK80 565 aa25.11■■□□□ 1.61
CLK3-223ENST00000568488 UNC13BO14795 1591 aa25.09■■□□□ 1.61
CLK3-223ENST00000568488 TRPC5Q9UL62 973 aaPredicted RBP25.08■■□□□ 1.61
CLK3-223ENST00000568488 ZNF326Q5BKZ1 582 aaKnown RBP25.07■■□□□ 1.6
CLK3-223ENST00000568488 E9PCH4 1651 aa25.07■■□□□ 1.6
CLK3-223ENST00000568488 METP08581 1390 aa25.05■■□□□ 1.6
CLK3-223ENST00000568488 XRN1Q8IZH2 1706 aaKnown RBP25.03■■□□□ 1.6
CLK3-223ENST00000568488 ADGRL3Q9HAR2 1447 aa25.03■■□□□ 1.6
CLK3-223ENST00000568488 SETBP1Q9Y6X0 1596 aa25■■□□□ 1.59
CLK3-223ENST00000568488 NUP155O75694 1391 aa24.99■■□□□ 1.59
CLK3-223ENST00000568488 FNBP4Q8N3X1 1017 aaPredicted RBP24.99■■□□□ 1.59
CLK3-223ENST00000568488 NRXN3Q9Y4C0 1643 aa24.99■■□□□ 1.59
CLK3-223ENST00000568488 C1orf167Q5SNV9 1468 aa24.98■■□□□ 1.59
CLK3-223ENST00000568488 ORAI2Q96SN7 254 aa24.98■■□□□ 1.59
CLK3-223ENST00000568488 CCDC125Q86Z20 511 aa24.97■■□□□ 1.59
CLK3-223ENST00000568488 SOS2Q07890 1332 aaPredicted RBP24.96■■□□□ 1.59
CLK3-223ENST00000568488 ATRNO75882 1429 aa24.94■■□□□ 1.58
CLK3-223ENST00000568488 PTCH1Q13635 1447 aa24.94■■□□□ 1.58
CLK3-223ENST00000568488 IQGAP3Q86VI3 1631 aa24.94■■□□□ 1.58
CLK3-223ENST00000568488 NALCNQ8IZF0 1738 aa24.93■■□□□ 1.58
CLK3-223ENST00000568488 EP400Q96L91 3159 aa24.89■■□□□ 1.57
CLK3-223ENST00000568488 ITGAEP38570 1179 aa24.87■■□□□ 1.57
CLK3-223ENST00000568488 GJD4Q96KN9 370 aaPredicted RBP24.87■■□□□ 1.57
CLK3-223ENST00000568488 ROCK1Q13464 1354 aa24.85■■□□□ 1.57
CLK3-223ENST00000568488 LAMC1P11047 1609 aa24.84■■□□□ 1.57
CLK3-223ENST00000568488 BCL9LQ86UU0 1499 aa24.83■■□□□ 1.57
CLK3-223ENST00000568488 ESCO1Q5FWF5 840 aa24.83■■□□□ 1.57
CLK3-223ENST00000568488 ROBO2Q9HCK4 1378 aa24.82■■□□□ 1.56
CLK3-223ENST00000568488 XPCQ01831 940 aaPredicted RBP24.81■■□□□ 1.56
CLK3-223ENST00000568488 DEFB132Q7Z7B7 95 aa24.81■■□□□ 1.56
CLK3-223ENST00000568488 SPHKAPQ2M3C7 1700 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms