RNA–Protein interactions for RNA: ENST00000567720.5

COMMD4-220, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-220ENST00000567720 CHGAP10645 457 aaKnown RBP25.48■■□□□ 1.67
COMMD4-220ENST00000567720 DMRT2Q9Y5R5 561 aa25.48■■□□□ 1.67
COMMD4-220ENST00000567720 STRCP1A6NGW2 1772 aa25.46■■□□□ 1.67
COMMD4-220ENST00000567720 NRXN3Q9Y4C0 1643 aa25.45■■□□□ 1.67
COMMD4-220ENST00000567720 LTBP4Q8N2S1 1624 aa25.45■■□□□ 1.66
COMMD4-220ENST00000567720 TXNDC2Q86VQ3 553 aa25.43■■□□□ 1.66
COMMD4-220ENST00000567720 SPATA31E1Q6ZUB1 1445 aa25.43■■□□□ 1.66
COMMD4-220ENST00000567720 ANKRD30BQ9BXX2 1392 aa25.43■■□□□ 1.66
COMMD4-220ENST00000567720 EID1Q9Y6B2 187 aa25.42■■□□□ 1.66
COMMD4-220ENST00000567720 SETBP1Q9Y6X0 1596 aa25.39■■□□□ 1.66
COMMD4-220ENST00000567720 PLEKHG1Q9ULL1 1385 aa25.39■■□□□ 1.65
COMMD4-220ENST00000567720 DIP2AQ14689 1571 aa25.39■■□□□ 1.65
COMMD4-220ENST00000567720 SETD1AO15047 1707 aaKnown RBP25.38■■□□□ 1.65
COMMD4-220ENST00000567720 ZNF335Q9H4Z2 1342 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-220ENST00000567720 NWD1Q149M9 1564 aa25.35■■□□□ 1.65
COMMD4-220ENST00000567720 ZNF326Q5BKZ1 582 aaKnown RBP25.34■■□□□ 1.65
COMMD4-220ENST00000567720 NUTM2DQ5VT03 806 aaPredicted RBP25.34■■□□□ 1.65
COMMD4-220ENST00000567720 DHX57Q6P158 1386 aaKnown RBP25.33■■□□□ 1.65
COMMD4-220ENST00000567720 CHD2O14647 1828 aaKnown RBP25.33■■□□□ 1.65
COMMD4-220ENST00000567720 PPP1R15AO75807 674 aaPredicted RBP25.33■■□□□ 1.65
COMMD4-220ENST00000567720 ADAMTS13Q76LX8 1427 aa25.33■■□□□ 1.65
COMMD4-220ENST00000567720 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.32■■□□□ 1.64
COMMD4-220ENST00000567720 CPS1P31327 1500 aa25.3■■□□□ 1.64
COMMD4-220ENST00000567720 XIRP1Q702N8 1843 aaKnown RBP25.29■■□□□ 1.64
COMMD4-220ENST00000567720 SENP3Q9H4L4 574 aaPredicted RBP25.29■■□□□ 1.64
COMMD4-220ENST00000567720 HDGFP51858 240 aaKnown RBP25.27■■□□□ 1.64
COMMD4-220ENST00000567720 MYOM2P54296 1465 aa25.26■■□□□ 1.63
COMMD4-220ENST00000567720 XRN1Q8IZH2 1706 aaKnown RBP25.26■■□□□ 1.63
COMMD4-220ENST00000567720 SLC26A8Q96RN1 970 aa25.25■■□□□ 1.63
COMMD4-220ENST00000567720 PCGF6Q9BYE7 350 aa25.25■■□□□ 1.63
COMMD4-220ENST00000567720 RPGRIP1LQ68CZ1 1315 aa25.25■■□□□ 1.63
COMMD4-220ENST00000567720 ALKQ9UM73 1620 aa25.23■■□□□ 1.63
COMMD4-220ENST00000567720 RGL3Q3MIN7 710 aa25.22■■□□□ 1.63
COMMD4-220ENST00000567720 IQSEC2Q5JU85 1478 aa25.21■■□□□ 1.63
COMMD4-220ENST00000567720 NRXN1Q9ULB1 1477 aa25.21■■□□□ 1.63
COMMD4-220ENST00000567720 LAMC1P11047 1609 aa25.21■■□□□ 1.63
COMMD4-220ENST00000567720 NKTRP30414 1462 aaKnown RBP25.21■■□□□ 1.63
COMMD4-220ENST00000567720 BCANQ96GW7 911 aa25.2■■□□□ 1.62
COMMD4-220ENST00000567720 PIK3C2GO75747 1445 aa25.2■■□□□ 1.62
COMMD4-220ENST00000567720 LRRC7Q96NW7 1537 aa25.19■■□□□ 1.62
COMMD4-220ENST00000567720 ASXL1Q8IXJ9 1541 aa25.18■■□□□ 1.62
COMMD4-220ENST00000567720 CERKQ8TCT0 537 aa25.17■■□□□ 1.62
COMMD4-220ENST00000567720 ADGRF5Q8IZF2 1346 aa25.16■■□□□ 1.62
COMMD4-220ENST00000567720 VGFO15240 615 aaPredicted RBP25.16■■□□□ 1.62
COMMD4-220ENST00000567720 PTPRUQ92729 1446 aa25.16■■□□□ 1.62
COMMD4-220ENST00000567720 TBX22Q9Y458 520 aa25.16■■□□□ 1.62
COMMD4-220ENST00000567720 PIK3R4Q99570 1358 aa25.16■■□□□ 1.62
COMMD4-220ENST00000567720 KNDC1Q76NI1 1749 aa25.13■■□□□ 1.61
COMMD4-220ENST00000567720 METP08581 1390 aa25.13■■□□□ 1.61
COMMD4-220ENST00000567720 KCNA6P17658 529 aa25.1■■□□□ 1.61
COMMD4-220ENST00000567720 PRAG1Q86YV5 1406 aa25.07■■□□□ 1.6
COMMD4-220ENST00000567720 SIN3AQ96ST3 1273 aa25.07■■□□□ 1.6
COMMD4-220ENST00000567720 NALCNQ8IZF0 1738 aa25.06■■□□□ 1.6
COMMD4-220ENST00000567720 KIAA1210Q9ULL0 1709 aa25.06■■□□□ 1.6
COMMD4-220ENST00000567720 ADGRB1O14514 1584 aa25.04■■□□□ 1.6
COMMD4-220ENST00000567720 TMEM94Q12767 1356 aa25.04■■□□□ 1.6
COMMD4-220ENST00000567720 PTCH1Q13635 1447 aa25.03■■□□□ 1.6
COMMD4-220ENST00000567720 DCAF11Q8TEB1 546 aa25.02■■□□□ 1.6
COMMD4-220ENST00000567720 SIPA1L2Q9P2F8 1722 aaPredicted RBP25■■□□□ 1.59
COMMD4-220ENST00000567720 AMOTL2Q9Y2J4 779 aa24.99■■□□□ 1.59
COMMD4-220ENST00000567720 TRPM1Q7Z4N2 1603 aa24.98■■□□□ 1.59
COMMD4-220ENST00000567720 TECPR2O15040 1411 aa24.98■■□□□ 1.59
COMMD4-220ENST00000567720 KDM2AQ9Y2K7 1162 aa24.98■■□□□ 1.59
COMMD4-220ENST00000567720 NEUROD1Q13562 356 aa24.97■■□□□ 1.59
COMMD4-220ENST00000567720 RBM33Q96EV2 1170 aaKnown RBP24.97■■□□□ 1.59
COMMD4-220ENST00000567720 ARHGEF28Q8N1W1 1705 aaKnown RBP24.96■■□□□ 1.59
COMMD4-220ENST00000567720 PROSER2Q86WR7 435 aaPredicted RBP24.96■■□□□ 1.59
COMMD4-220ENST00000567720 YTHDC2Q9H6S0 1430 aaKnown RBP24.95■■□□□ 1.59
COMMD4-220ENST00000567720 CFAP70Q5T0N1 1121 aa24.95■■□□□ 1.58
COMMD4-220ENST00000567720 C14orf93Q9H972 538 aaKnown RBP24.95■■□□□ 1.58
COMMD4-220ENST00000567720 ROBO2Q9HCK4 1378 aa24.94■■□□□ 1.58
COMMD4-220ENST00000567720 FBXO41Q8TF61 875 aa24.94■■□□□ 1.58
COMMD4-220ENST00000567720 L3MBTL2Q969R5 705 aa24.94■■□□□ 1.58
COMMD4-220ENST00000567720 STAC3Q96MF2 364 aa24.94■■□□□ 1.58
COMMD4-220ENST00000567720 LRPPRCP42704 1394 aaKnown RBP24.93■■□□□ 1.58
COMMD4-220ENST00000567720 NCOA3Q9Y6Q9 1424 aa24.93■■□□□ 1.58
COMMD4-220ENST00000567720 TMEM132EQ6IEE7 984 aa24.91■■□□□ 1.58
COMMD4-220ENST00000567720 DLC1Q96QB1 1528 aa24.91■■□□□ 1.58
COMMD4-220ENST00000567720 ADGRL3Q9HAR2 1447 aa24.9■■□□□ 1.58
COMMD4-220ENST00000567720 TONSLQ96HA7 1378 aa24.89■■□□□ 1.57
COMMD4-220ENST00000567720 MSH6P52701 1360 aa24.88■■□□□ 1.57
COMMD4-220ENST00000567720 ABCC11Q96J66 1382 aa24.88■■□□□ 1.57
COMMD4-220ENST00000567720 UBAP1LF5GYI3 381 aa24.87■■□□□ 1.57
COMMD4-220ENST00000567720 CDC42BPGQ6DT37 1551 aa24.86■■□□□ 1.57
COMMD4-220ENST00000567720 DCCP43146 1447 aa24.86■■□□□ 1.57
COMMD4-220ENST00000567720 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
COMMD4-220ENST00000567720 ROBO1Q9Y6N7 1651 aa24.85■■□□□ 1.57
COMMD4-220ENST00000567720 ILDR1Q86SU0 546 aaPredicted RBP24.85■■□□□ 1.57
COMMD4-220ENST00000567720 STK26Q9P289 416 aa24.84■■□□□ 1.57
COMMD4-220ENST00000567720 PLEKHH1Q9ULM0 1364 aa24.83■■□□□ 1.57
COMMD4-220ENST00000567720 FAM135BQ49AJ0 1406 aa24.83■■□□□ 1.57
COMMD4-220ENST00000567720 ADGRB2O60241 1585 aa24.81■■□□□ 1.56
COMMD4-220ENST00000567720 FMN2Q9NZ56 1722 aa24.81■■□□□ 1.56
COMMD4-220ENST00000567720 TOM1O60784 492 aa24.8■■□□□ 1.56
COMMD4-220ENST00000567720 C14orf37Q86TY3 774 aa24.8■■□□□ 1.56
COMMD4-220ENST00000567720 RALGAPBQ86X10 1494 aa24.78■■□□□ 1.56
COMMD4-220ENST00000567720 CCER1Q8TC90 406 aaPredicted RBP24.78■■□□□ 1.56
COMMD4-220ENST00000567720 QRICH2Q9H0J4 1663 aa24.77■■□□□ 1.56
COMMD4-220ENST00000567720 MST1RQ04912 1400 aa24.77■■□□□ 1.56
COMMD4-220ENST00000567720 NBPF1Q3BBV0 1214 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms