RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 CD109Q6YHK3 1445 aa21.16■□□□□ 0.98
LINC00554-201ENST00000564841 BRD4O60885 1362 aaPredicted RBP21.15■□□□□ 0.98
LINC00554-201ENST00000564841 KDM5DQ9BY66 1539 aa21.12■□□□□ 0.97
LINC00554-201ENST00000564841 POLR1AO95602 1720 aaPredicted RBP21.12■□□□□ 0.97
LINC00554-201ENST00000564841 MAST1Q9Y2H9 1570 aa21.11■□□□□ 0.97
LINC00554-201ENST00000564841 PDE3BQ13370 1112 aa21.1■□□□□ 0.97
LINC00554-201ENST00000564841 ERBINQ96RT1 1412 aa21.1■□□□□ 0.97
LINC00554-201ENST00000564841 SEC24BO95487 1268 aa21.1■□□□□ 0.97
LINC00554-201ENST00000564841 KTN1Q86UP2 1357 aaKnown RBP21.1■□□□□ 0.97
LINC00554-201ENST00000564841 RALBP1Q15311 655 aa21.1■□□□□ 0.97
LINC00554-201ENST00000564841 PANK2Q9BZ23 570 aa21.1■□□□□ 0.97
LINC00554-201ENST00000564841 ARID4BQ4LE39 1312 aaPredicted RBP21.09■□□□□ 0.97
LINC00554-201ENST00000564841 GZF1Q9H116 711 aaPredicted RBP21.09■□□□□ 0.97
LINC00554-201ENST00000564841 PLXNC1O60486 1568 aa21.08■□□□□ 0.97
LINC00554-201ENST00000564841 NLRP13Q86W25 1043 aa21.07■□□□□ 0.96
LINC00554-201ENST00000564841 KANK1Q14678 1352 aa21.07■□□□□ 0.96
LINC00554-201ENST00000564841 CENPQQ7L2Z9 268 aaPredicted RBP21.07■□□□□ 0.96
LINC00554-201ENST00000564841 ZFYVE16Q7Z3T8 1539 aa21.07■□□□□ 0.96
LINC00554-201ENST00000564841 ATP7AQ04656 1500 aa21.06■□□□□ 0.96
LINC00554-201ENST00000564841 GLIPR1L2Q4G1C9 344 aa21.06■□□□□ 0.96
LINC00554-201ENST00000564841 SPRYD3Q8NCJ5 442 aa21.05■□□□□ 0.96
LINC00554-201ENST00000564841 HSP90AA2PQ14568 343 aaPredicted RBP21.05■□□□□ 0.96
LINC00554-201ENST00000564841 NUTM2DQ5VT03 806 aaPredicted RBP21.05■□□□□ 0.96
LINC00554-201ENST00000564841 A2MP01023 1474 aa21.05■□□□□ 0.96
LINC00554-201ENST00000564841 CFAP65Q6ZU64 1925 aaKnown RBP21.05■□□□□ 0.96
LINC00554-201ENST00000564841 ABCA9Q8IUA7 1624 aa21.05■□□□□ 0.96
LINC00554-201ENST00000564841 FAM69CQ0P6D2 419 aa21.04■□□□□ 0.96
LINC00554-201ENST00000564841 UNC13BO14795 1591 aa21.04■□□□□ 0.96
LINC00554-201ENST00000564841 XRCC6P12956 609 aaKnown RBP eCLIP21.04■□□□□ 0.96
LINC00554-201ENST00000564841 USP19O94966 1318 aa21.03■□□□□ 0.96
LINC00554-201ENST00000564841 PANK3Q9H999 370 aa21.03■□□□□ 0.96
LINC00554-201ENST00000564841 PNNQ9H307 717 aaKnown RBP21.02■□□□□ 0.96
LINC00554-201ENST00000564841 RALGAPBQ86X10 1494 aa21.02■□□□□ 0.96
LINC00554-201ENST00000564841 RTEL1-TNFRSF6BF6WH68 1400 aa21.01■□□□□ 0.95
LINC00554-201ENST00000564841 PRAG1Q86YV5 1406 aa21.01■□□□□ 0.95
LINC00554-201ENST00000564841 UHRF1BP1Q6BDS2 1440 aa21.01■□□□□ 0.95
LINC00554-201ENST00000564841 KDM5CP41229 1560 aa21.01■□□□□ 0.95
LINC00554-201ENST00000564841 IQGAP3Q86VI3 1631 aa21■□□□□ 0.95
LINC00554-201ENST00000564841 HSP90AA1P07900 732 aaKnown RBP20.98■□□□□ 0.95
LINC00554-201ENST00000564841 ADAMTS8Q9UP79 889 aa20.97■□□□□ 0.95
LINC00554-201ENST00000564841 UGGT1Q9NYU2 1555 aa20.96■□□□□ 0.95
LINC00554-201ENST00000564841 IGHDP01880 384 aa20.96■□□□□ 0.95
LINC00554-201ENST00000564841 DISP3Q9P2K9 1392 aa20.96■□□□□ 0.95
LINC00554-201ENST00000564841 ARAP3Q8WWN8 1544 aa20.95■□□□□ 0.94
LINC00554-201ENST00000564841 ZNF518AQ6AHZ1 1483 aa20.95■□□□□ 0.94
LINC00554-201ENST00000564841 ATP10AO60312 1499 aa20.95■□□□□ 0.94
LINC00554-201ENST00000564841 CFAP70Q5T0N1 1121 aa20.94■□□□□ 0.94
LINC00554-201ENST00000564841 L1TD1Q5T7N2 865 aaKnown RBP20.94■□□□□ 0.94
LINC00554-201ENST00000564841 PER1O15534 1290 aaPredicted RBP20.94■□□□□ 0.94
LINC00554-201ENST00000564841 PARD3Q8TEW0 1356 aa20.93■□□□□ 0.94
LINC00554-201ENST00000564841 MLECQ14165 292 aa20.93■□□□□ 0.94
LINC00554-201ENST00000564841 E9PCH4 1651 aa20.93■□□□□ 0.94
LINC00554-201ENST00000564841 DUSP27Q5VZP5 1158 aa20.93■□□□□ 0.94
LINC00554-201ENST00000564841 MAGI2Q86UL8 1455 aa20.91■□□□□ 0.94
LINC00554-201ENST00000564841 GOLGA6L3A6NEY3 463 aa20.91■□□□□ 0.94
LINC00554-201ENST00000564841 BCAR3O75815 825 aa20.91■□□□□ 0.94
LINC00554-201ENST00000564841 ADGRF5Q8IZF2 1346 aa20.9■□□□□ 0.94
LINC00554-201ENST00000564841 INO80Q9ULG1 1556 aaPredicted RBP20.9■□□□□ 0.94
LINC00554-201ENST00000564841 PLEKHH1Q9ULM0 1364 aa20.9■□□□□ 0.94
LINC00554-201ENST00000564841 CLCN1P35523 988 aa20.89■□□□□ 0.94
LINC00554-201ENST00000564841 ANTXR1Q9H6X2 564 aa20.89■□□□□ 0.94
LINC00554-201ENST00000564841 POGZQ7Z3K3 1410 aa20.89■□□□□ 0.94
LINC00554-201ENST00000564841 KIDINS220Q9ULH0 1771 aa20.89■□□□□ 0.93
LINC00554-201ENST00000564841 CCDC146Q8IYE0 955 aa20.89■□□□□ 0.93
LINC00554-201ENST00000564841 TESK2Q96S53 571 aa20.88■□□□□ 0.93
LINC00554-201ENST00000564841 TMF1P82094 1093 aa20.87■□□□□ 0.93
LINC00554-201ENST00000564841 SPINK5Q9NQ38 1064 aaPredicted RBP20.87■□□□□ 0.93
LINC00554-201ENST00000564841 RRP9O43818 475 aaKnown RBP20.87■□□□□ 0.93
LINC00554-201ENST00000564841 ERBB4Q15303 1308 aa20.86■□□□□ 0.93
LINC00554-201ENST00000564841 BECN1Q14457 450 aa20.85■□□□□ 0.93
LINC00554-201ENST00000564841 TMEM132EQ6IEE7 984 aa20.85■□□□□ 0.93
LINC00554-201ENST00000564841 TBC1D2Q9BYX2 928 aa20.84■□□□□ 0.93
LINC00554-201ENST00000564841 YEATS2Q9ULM3 1422 aa20.84■□□□□ 0.93
LINC00554-201ENST00000564841 CLTCL1P53675 1640 aa20.83■□□□□ 0.93
LINC00554-201ENST00000564841 TRPM1Q7Z4N2 1603 aa20.83■□□□□ 0.93
LINC00554-201ENST00000564841 FSD2A1L4K1 749 aa20.83■□□□□ 0.93
LINC00554-201ENST00000564841 PLEKHG5O94827 1062 aa20.83■□□□□ 0.92
LINC00554-201ENST00000564841 BLMP54132 1417 aaPredicted RBP20.82■□□□□ 0.92
LINC00554-201ENST00000564841 TSPOAP1O95153 1857 aa20.82■□□□□ 0.92
LINC00554-201ENST00000564841 TRAK1Q9UPV9 953 aa20.82■□□□□ 0.92
LINC00554-201ENST00000564841 SAFB2Q14151 953 aaKnown RBP eCLIP20.8■□□□□ 0.92
LINC00554-201ENST00000564841 GOLGA2Q08379 1002 aa20.8■□□□□ 0.92
LINC00554-201ENST00000564841 PRDM15P57071 1507 aaPredicted RBP20.8■□□□□ 0.92
LINC00554-201ENST00000564841 RIMBP3CA6NJZ7 1639 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 RIMBP3BA6NNM3 1639 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 RIMBP3Q9UFD9 1639 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 PTPRTO14522 1441 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 MCM4P33991 863 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 TRPM2O94759 1503 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 SPHKAPQ2M3C7 1700 aa20.79■□□□□ 0.92
LINC00554-201ENST00000564841 FBXO31Q5XUX0 539 aaPredicted RBP20.78■□□□□ 0.92
LINC00554-201ENST00000564841 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.78■□□□□ 0.92
LINC00554-201ENST00000564841 PANK1Q8TE04 598 aa20.78■□□□□ 0.92
LINC00554-201ENST00000564841 KNSTRNQ9Y448 316 aa20.78■□□□□ 0.92
LINC00554-201ENST00000564841 COG6Q9Y2V7 657 aa20.78■□□□□ 0.92
LINC00554-201ENST00000564841 TET3O43151 1660 aa20.77■□□□□ 0.92
LINC00554-201ENST00000564841 CEP152O94986 1710 aa20.77■□□□□ 0.92
LINC00554-201ENST00000564841 NPATQ14207 1427 aa20.77■□□□□ 0.92
LINC00554-201ENST00000564841 WDR43Q15061 677 aaKnown RBP eCLIP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms