RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SPINK5Q9NQ38 1064 aaPredicted RBP17.25■□□□□ 0.35
CLN3-210ENST00000563874 IQGAP3Q86VI3 1631 aa17.25■□□□□ 0.35
CLN3-210ENST00000563874 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
CLN3-210ENST00000563874 APAF1O14727 1248 aa17.23■□□□□ 0.35
CLN3-210ENST00000563874 UBE2Q2Q8WVN8 375 aa17.23■□□□□ 0.35
CLN3-210ENST00000563874 MAST1Q9Y2H9 1570 aa17.22■□□□□ 0.35
CLN3-210ENST00000563874 SLFN5Q08AF3 891 aa17.22■□□□□ 0.35
CLN3-210ENST00000563874 C8orf34Q49A92 452 aa17.22■□□□□ 0.35
CLN3-210ENST00000563874 BCAR3O75815 825 aa17.22■□□□□ 0.35
CLN3-210ENST00000563874 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.22■□□□□ 0.35
CLN3-210ENST00000563874 DUOX2Q9NRD8 1548 aa17.21■□□□□ 0.35
CLN3-210ENST00000563874 FAM161AQ3B820 660 aa17.21■□□□□ 0.35
CLN3-210ENST00000563874 ATP10AO60312 1499 aa17.21■□□□□ 0.35
CLN3-210ENST00000563874 NFKBIBQ15653 356 aa17.21■□□□□ 0.35
CLN3-210ENST00000563874 CDCA8Q53HL2 280 aa17.19■□□□□ 0.34
CLN3-210ENST00000563874 PLXNC1O60486 1568 aa17.19■□□□□ 0.34
CLN3-210ENST00000563874 AFAP1Q8N556 730 aa17.18■□□□□ 0.34
CLN3-210ENST00000563874 DMRT2Q9Y5R5 561 aa17.18■□□□□ 0.34
CLN3-210ENST00000563874 RNF17Q9BXT8 1623 aaKnown RBP17.18■□□□□ 0.34
CLN3-210ENST00000563874 TRAPPC8Q9Y2L5 1435 aa17.18■□□□□ 0.34
CLN3-210ENST00000563874 EFCAB2Q5VUJ9 269 aa17.17■□□□□ 0.34
CLN3-210ENST00000563874 ASXL1Q8IXJ9 1541 aa17.16■□□□□ 0.34
CLN3-210ENST00000563874 SCAF11Q99590 1463 aaKnown RBP17.16■□□□□ 0.34
CLN3-210ENST00000563874 MADDQ8WXG6 1647 aa17.15■□□□□ 0.34
CLN3-210ENST00000563874 ERCC6L2Q5T890 1561 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 GSE1Q14687 1217 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 PODXL2Q9NZ53 605 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 SPAG9O60271 1321 aaKnown RBP17.14■□□□□ 0.33
CLN3-210ENST00000563874 CFAP70Q5T0N1 1121 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 OSCARQ8IYS5 282 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 BRPF3Q9ULD4 1205 aa17.14■□□□□ 0.33
CLN3-210ENST00000563874 TRMT2AQ8IZ69 625 aaKnown RBP17.13■□□□□ 0.33
CLN3-210ENST00000563874 PIK3C2GO75747 1445 aa17.13■□□□□ 0.33
CLN3-210ENST00000563874 IGHDP01880 384 aa17.13■□□□□ 0.33
CLN3-210ENST00000563874 PLCH2O75038 1416 aa17.12■□□□□ 0.33
CLN3-210ENST00000563874 CARD14Q9BXL6 1004 aa17.12■□□□□ 0.33
CLN3-210ENST00000563874 IQGAP1P46940 1657 aa17.12■□□□□ 0.33
CLN3-210ENST00000563874 SYNMO15061 1565 aa17.12■□□□□ 0.33
CLN3-210ENST00000563874 NKTRP30414 1462 aaKnown RBP17.11■□□□□ 0.33
CLN3-210ENST00000563874 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
CLN3-210ENST00000563874 FRAT1Q92837 279 aaPredicted RBP17.11■□□□□ 0.33
CLN3-210ENST00000563874 TNNT2P45379 298 aaPredicted RBP17.11■□□□□ 0.33
CLN3-210ENST00000563874 E9PSI1 815 aa17.1■□□□□ 0.33
CLN3-210ENST00000563874 FRAT2O75474 233 aaPredicted RBP17.1■□□□□ 0.33
CLN3-210ENST00000563874 CANXP27824 592 aaKnown RBP17.1■□□□□ 0.33
CLN3-210ENST00000563874 PANK1Q8TE04 598 aa17.1■□□□□ 0.33
CLN3-210ENST00000563874 COG6Q9Y2V7 657 aa17.1■□□□□ 0.33
CLN3-210ENST00000563874 ABCC2Q92887 1545 aa17.09■□□□□ 0.33
CLN3-210ENST00000563874 RRP7AQ9Y3A4 280 aaKnown RBP17.08■□□□□ 0.33
CLN3-210ENST00000563874 EIF3AQ14152 1382 aaKnown RBP17.08■□□□□ 0.33
CLN3-210ENST00000563874 SCAPERQ9BY12 1400 aa17.07■□□□□ 0.32
CLN3-210ENST00000563874 ADGRF5Q8IZF2 1346 aa17.07■□□□□ 0.32
CLN3-210ENST00000563874 KIF3BO15066 747 aa17.07■□□□□ 0.32
CLN3-210ENST00000563874 CLTCL1P53675 1640 aa17.07■□□□□ 0.32
CLN3-210ENST00000563874 TRPM2O94759 1503 aa17.07■□□□□ 0.32
CLN3-210ENST00000563874 MYOM1P52179 1685 aa17.06■□□□□ 0.32
CLN3-210ENST00000563874 CLASP1Q7Z460 1538 aa17.06■□□□□ 0.32
CLN3-210ENST00000563874 SEC24BO95487 1268 aa17.06■□□□□ 0.32
CLN3-210ENST00000563874 NPC1L1Q9UHC9 1359 aa17.06■□□□□ 0.32
CLN3-210ENST00000563874 CENPJQ9HC77 1338 aaPredicted RBP17.05■□□□□ 0.32
CLN3-210ENST00000563874 ABCC1P33527 1531 aa17.05■□□□□ 0.32
CLN3-210ENST00000563874 CHD1O14646 1710 aa17.05■□□□□ 0.32
CLN3-210ENST00000563874 WWC1Q8IX03 1113 aa17.05■□□□□ 0.32
CLN3-210ENST00000563874 PTPRTO14522 1441 aa17.04■□□□□ 0.32
CLN3-210ENST00000563874 SPHKAPQ2M3C7 1700 aa17.04■□□□□ 0.32
CLN3-210ENST00000563874 CLUAP1Q96AJ1 413 aa17.04■□□□□ 0.32
CLN3-210ENST00000563874 BCL2L13Q9BXK5 485 aa17.03■□□□□ 0.32
CLN3-210ENST00000563874 ERVK-7P63135 1459 aa17.03■□□□□ 0.32
CLN3-210ENST00000563874 UGGT1Q9NYU2 1555 aa17.03■□□□□ 0.32
CLN3-210ENST00000563874 STAC3Q96MF2 364 aa17.02■□□□□ 0.32
CLN3-210ENST00000563874 TNNQ9UQP3 1299 aa17.02■□□□□ 0.32
CLN3-210ENST00000563874 USP19O94966 1318 aa17.02■□□□□ 0.31
CLN3-210ENST00000563874 CGNL1Q0VF96 1302 aa17.02■□□□□ 0.31
CLN3-210ENST00000563874 CHGAP10645 457 aaKnown RBP17.01■□□□□ 0.31
CLN3-210ENST00000563874 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
CLN3-210ENST00000563874 KDM5AP29375 1690 aaKnown RBP17.01■□□□□ 0.31
CLN3-210ENST00000563874 PDE3AQ14432 1141 aa17■□□□□ 0.31
CLN3-210ENST00000563874 CEP152O94986 1710 aa17■□□□□ 0.31
CLN3-210ENST00000563874 KANK1Q14678 1352 aa17■□□□□ 0.31
CLN3-210ENST00000563874 MORC1Q86VD1 984 aa17■□□□□ 0.31
CLN3-210ENST00000563874 SLKQ9H2G2 1235 aaPredicted RBP16.99■□□□□ 0.31
CLN3-210ENST00000563874 SLC12A5Q9H2X9 1139 aa16.99■□□□□ 0.31
CLN3-210ENST00000563874 TRAK1Q9UPV9 953 aa16.99■□□□□ 0.31
CLN3-210ENST00000563874 ZFYVE16Q7Z3T8 1539 aa16.99■□□□□ 0.31
CLN3-210ENST00000563874 PKNOX2Q96KN3 472 aa16.98■□□□□ 0.31
CLN3-210ENST00000563874 SHROOM2Q13796 1616 aa16.98■□□□□ 0.31
CLN3-210ENST00000563874 ZCCHC11Q5TAX3 1644 aaKnown RBP16.98■□□□□ 0.31
CLN3-210ENST00000563874 RLBP1P12271 317 aa16.98■□□□□ 0.31
CLN3-210ENST00000563874 TCP11L2Q8N4U5 519 aa16.97■□□□□ 0.31
CLN3-210ENST00000563874 RARSP54136 660 aaKnown RBP16.96■□□□□ 0.31
CLN3-210ENST00000563874 PCDHB15Q9Y5E8 787 aa16.96■□□□□ 0.31
CLN3-210ENST00000563874 RTEL1-TNFRSF6BF6WH68 1400 aa16.96■□□□□ 0.31
CLN3-210ENST00000563874 NSD3Q9BZ95 1437 aa16.96■□□□□ 0.31
CLN3-210ENST00000563874 MAPK8IP3Q9UPT6 1336 aa16.95■□□□□ 0.3
CLN3-210ENST00000563874 POLR3AO14802 1390 aaPredicted RBP16.94■□□□□ 0.3
CLN3-210ENST00000563874 TMEM132EQ6IEE7 984 aa16.94■□□□□ 0.3
CLN3-210ENST00000563874 RUNDC1Q96C34 613 aa16.94■□□□□ 0.3
CLN3-210ENST00000563874 ABCA6Q8N139 1617 aa16.94■□□□□ 0.3
CLN3-210ENST00000563874 NGEFQ8N5V2 710 aa16.93■□□□□ 0.3
CLN3-210ENST00000563874 TET3O43151 1660 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms