RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 CCDC141Q6ZP82 1450 aa13.31□□□□□ -0.28
RNF40-204ENST00000563683 PZPP20742 1482 aa13.31□□□□□ -0.28
RNF40-204ENST00000563683 ATP10BO94823 1461 aa13.31□□□□□ -0.28
RNF40-204ENST00000563683 E9PSI1 815 aa13.31□□□□□ -0.28
RNF40-204ENST00000563683 MINK1Q8N4C8 1332 aaPredicted RBP13.3□□□□□ -0.28
RNF40-204ENST00000563683 WDR62O43379 1518 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 VGFO15240 615 aaPredicted RBP13.3□□□□□ -0.28
RNF40-204ENST00000563683 GLIPR1L2Q4G1C9 344 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 CYB5RLQ6IPT4 315 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 PLEKHH2Q8IVE3 1493 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 RAPGEF6Q8TEU7 1601 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 ITPRIPQ8IWB1 547 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 SLC12A5Q9H2X9 1139 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 SMC4Q9NTJ3 1288 aa13.3□□□□□ -0.28
RNF40-204ENST00000563683 OSCARQ8IYS5 282 aa13.29□□□□□ -0.28
RNF40-204ENST00000563683 ERBINQ96RT1 1412 aa13.29□□□□□ -0.28
RNF40-204ENST00000563683 SLKQ9H2G2 1235 aaPredicted RBP13.29□□□□□ -0.28
RNF40-204ENST00000563683 PARD3Q8TEW0 1356 aa13.29□□□□□ -0.28
RNF40-204ENST00000563683 FRAT2O75474 233 aaPredicted RBP13.29□□□□□ -0.28
RNF40-204ENST00000563683 TERF2IPQ9NYB0 399 aa13.29□□□□□ -0.28
RNF40-204ENST00000563683 ADAMTS12P58397 1594 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 ZMYM4Q5VZL5 1548 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 CGNL1Q0VF96 1302 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 NUTM2FA1L443 756 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 SKAP1Q86WV1 359 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 KDM2BQ8NHM5 1336 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 L1TD1Q5T7N2 865 aaKnown RBP13.28□□□□□ -0.28
RNF40-204ENST00000563683 STAC3Q96MF2 364 aa13.28□□□□□ -0.28
RNF40-204ENST00000563683 DISP1Q96F81 1524 aa13.27□□□□□ -0.29
RNF40-204ENST00000563683 PNNQ9H307 717 aaKnown RBP13.27□□□□□ -0.29
RNF40-204ENST00000563683 EVC2Q86UK5 1308 aa13.27□□□□□ -0.29
RNF40-204ENST00000563683 CABP2Q9NPB3 220 aa13.27□□□□□ -0.29
RNF40-204ENST00000563683 ARHGEF12Q9NZN5 1544 aa13.27□□□□□ -0.29
RNF40-204ENST00000563683 RWDD1Q9H446 243 aaPredicted RBP13.26□□□□□ -0.29
RNF40-204ENST00000563683 MTHFSP49914 203 aa13.26□□□□□ -0.29
RNF40-204ENST00000563683 KIAA0556O60303 1618 aa13.25□□□□□ -0.29
RNF40-204ENST00000563683 ELL2O00472 640 aaPredicted RBP13.25□□□□□ -0.29
RNF40-204ENST00000563683 PANK1Q8TE04 598 aa13.25□□□□□ -0.29
RNF40-204ENST00000563683 C8orf34Q49A92 452 aa13.25□□□□□ -0.29
RNF40-204ENST00000563683 GGNBP2Q9H3C7 697 aa13.25□□□□□ -0.29
RNF40-204ENST00000563683 BCAR3O75815 825 aa13.25□□□□□ -0.29
RNF40-204ENST00000563683 BLMP54132 1417 aaPredicted RBP13.24□□□□□ -0.29
RNF40-204ENST00000563683 RAPGEF3O95398 923 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 PMFBP1Q8TBY8 1022 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 TCP11L2Q8N4U5 519 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 DISP3Q9P2K9 1392 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 APBB1O00213 710 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 C20orf194Q5TEA3 1177 aa13.23□□□□□ -0.29
RNF40-204ENST00000563683 IPO8O15397 1037 aaKnown RBP13.22□□□□□ -0.29
RNF40-204ENST00000563683 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
RNF40-204ENST00000563683 TRHP20396 242 aaPredicted RBP13.21□□□□□ -0.29
RNF40-204ENST00000563683 E9PCH4 1651 aa13.21□□□□□ -0.3
RNF40-204ENST00000563683 MFAP1P55081 439 aaKnown RBP13.2□□□□□ -0.3
RNF40-204ENST00000563683 ADGRL2O95490 1459 aa13.2□□□□□ -0.3
RNF40-204ENST00000563683 ADGRF5Q8IZF2 1346 aa13.19□□□□□ -0.3
RNF40-204ENST00000563683 ADGBQ8N7X0 1667 aa13.19□□□□□ -0.3
RNF40-204ENST00000563683 PER1O15534 1290 aaPredicted RBP13.18□□□□□ -0.3
RNF40-204ENST00000563683 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
RNF40-204ENST00000563683 LMOD2Q6P5Q4 547 aa13.18□□□□□ -0.3
RNF40-204ENST00000563683 ZKSCAN2Q63HK3 967 aa13.18□□□□□ -0.3
RNF40-204ENST00000563683 TARBP1Q13395 1621 aaKnown RBP13.18□□□□□ -0.3
RNF40-204ENST00000563683 RIPK4P57078 832 aa13.18□□□□□ -0.3
RNF40-204ENST00000563683 ANP32BQ92688 251 aaKnown RBP13.17□□□□□ -0.3
RNF40-204ENST00000563683 TESK2Q96S53 571 aa13.17□□□□□ -0.3
RNF40-204ENST00000563683 EIF4G3O43432 1585 aaKnown RBP13.16□□□□□ -0.3
RNF40-204ENST00000563683 PBRM1Q86U86 1689 aa13.16□□□□□ -0.3
RNF40-204ENST00000563683 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
RNF40-204ENST00000563683 CHMP4BQ9H444 224 aaKnown RBP13.16□□□□□ -0.3
RNF40-204ENST00000563683 DIAPH1O60610 1272 aaKnown RBP13.15□□□□□ -0.3
RNF40-204ENST00000563683 NGEFQ8N5V2 710 aa13.15□□□□□ -0.3
RNF40-204ENST00000563683 HMOX1P09601 288 aa13.15□□□□□ -0.3
RNF40-204ENST00000563683 FAM69CQ0P6D2 419 aa13.15□□□□□ -0.3
RNF40-204ENST00000563683 HSCBQ8IWL3 235 aa13.15□□□□□ -0.3
RNF40-204ENST00000563683 NCLP19338 710 aaKnown RBP13.14□□□□□ -0.31
RNF40-204ENST00000563683 DUSP27Q5VZP5 1158 aa13.14□□□□□ -0.31
RNF40-204ENST00000563683 GZF1Q9H116 711 aaPredicted RBP13.14□□□□□ -0.31
RNF40-204ENST00000563683 SYCP2Q9BX26 1530 aa13.14□□□□□ -0.31
RNF40-204ENST00000563683 SLFN5Q08AF3 891 aa13.14□□□□□ -0.31
RNF40-204ENST00000563683 PRAG1Q86YV5 1406 aa13.14□□□□□ -0.31
RNF40-204ENST00000563683 DZIP1LQ8IYY4 767 aaKnown RBP13.14□□□□□ -0.31
RNF40-204ENST00000563683 TSR2Q969E8 191 aaKnown RBP13.13□□□□□ -0.31
RNF40-204ENST00000563683 PRAM1Q96QH2 718 aa13.13□□□□□ -0.31
RNF40-204ENST00000563683 ITSN2Q9NZM3 1697 aa13.13□□□□□ -0.31
RNF40-204ENST00000563683 PKNOX2Q96KN3 472 aa13.13□□□□□ -0.31
RNF40-204ENST00000563683 FAM135AQ9P2D6 1515 aa13.12□□□□□ -0.31
RNF40-204ENST00000563683 RTF1Q92541 710 aaKnown RBP13.12□□□□□ -0.31
RNF40-204ENST00000563683 CALD1Q05682 793 aaKnown RBP13.12□□□□□ -0.31
RNF40-204ENST00000563683 GOLGA6L3A6NEY3 463 aa13.12□□□□□ -0.31
RNF40-204ENST00000563683 WWC1Q8IX03 1113 aa13.11□□□□□ -0.31
RNF40-204ENST00000563683 NAP1L5Q96NT1 182 aaPredicted RBP13.11□□□□□ -0.31
RNF40-204ENST00000563683 RRAGDQ9NQL2 400 aaPredicted RBP13.11□□□□□ -0.31
RNF40-204ENST00000563683 TPRNQ4KMQ1 711 aa13.11□□□□□ -0.31
RNF40-204ENST00000563683 NUP160Q12769 1436 aa13.1□□□□□ -0.31
RNF40-204ENST00000563683 TRAPPC8Q9Y2L5 1435 aa13.1□□□□□ -0.31
RNF40-204ENST00000563683 COL17A1Q9UMD9 1497 aaPredicted RBP13.1□□□□□ -0.31
RNF40-204ENST00000563683 EXOSC9Q06265 439 aaKnown RBP13.1□□□□□ -0.31
RNF40-204ENST00000563683 AMER1Q5JTC6 1135 aaPredicted RBP13.1□□□□□ -0.31
RNF40-204ENST00000563683 CASC1Q6TDU7 716 aa13.1□□□□□ -0.31
RNF40-204ENST00000563683 GOLGA6L22H0YM25 854 aa13.09□□□□□ -0.31
RNF40-204ENST00000563683 ANKRD45Q5TZF3 282 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms