RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RIMS2Q9UQ26 1411 aa23.95■■□□□ 1.42
VPS4A-202ENST00000562754 TIMELESSQ9UNS1 1208 aa23.95■■□□□ 1.42
VPS4A-202ENST00000562754 TMEM2Q9UHN6 1383 aa23.94■■□□□ 1.42
VPS4A-202ENST00000562754 RPGRIP1LQ68CZ1 1315 aa23.93■■□□□ 1.42
VPS4A-202ENST00000562754 DCAF11Q8TEB1 546 aa23.92■■□□□ 1.42
VPS4A-202ENST00000562754 THEMISQ8N1K5 641 aaPredicted RBP23.91■■□□□ 1.42
VPS4A-202ENST00000562754 NRXN1Q9ULB1 1477 aa23.9■■□□□ 1.42
VPS4A-202ENST00000562754 KDM2AQ9Y2K7 1162 aa23.88■■□□□ 1.41
VPS4A-202ENST00000562754 PRAG1Q86YV5 1406 aa23.87■■□□□ 1.41
VPS4A-202ENST00000562754 NUTM2DQ5VT03 806 aaPredicted RBP23.87■■□□□ 1.41
VPS4A-202ENST00000562754 ADGRF5Q8IZF2 1346 aa23.86■■□□□ 1.41
VPS4A-202ENST00000562754 PPP1R15AO75807 674 aaPredicted RBP23.86■■□□□ 1.41
VPS4A-202ENST00000562754 ZEB1P37275 1124 aaPredicted RBP23.86■■□□□ 1.41
VPS4A-202ENST00000562754 POLR1AO95602 1720 aaPredicted RBP23.86■■□□□ 1.41
VPS4A-202ENST00000562754 SCAF11Q99590 1463 aaKnown RBP23.85■■□□□ 1.41
VPS4A-202ENST00000562754 LTKP29376 864 aa23.84■■□□□ 1.41
VPS4A-202ENST00000562754 NRXN3Q9Y4C0 1643 aa23.84■■□□□ 1.41
VPS4A-202ENST00000562754 PIK3C2GO75747 1445 aa23.84■■□□□ 1.41
VPS4A-202ENST00000562754 NBPF8Q3BBV2 869 aa23.83■■□□□ 1.41
VPS4A-202ENST00000562754 IQGAP1P46940 1657 aa23.83■■□□□ 1.4
VPS4A-202ENST00000562754 HSPA2P54652 639 aa23.82■■□□□ 1.4
VPS4A-202ENST00000562754 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.82■■□□□ 1.4
VPS4A-202ENST00000562754 STAC3Q96MF2 364 aa23.82■■□□□ 1.4
VPS4A-202ENST00000562754 TRPM1Q7Z4N2 1603 aa23.81■■□□□ 1.4
VPS4A-202ENST00000562754 VGFO15240 615 aaPredicted RBP23.81■■□□□ 1.4
VPS4A-202ENST00000562754 TXNDC2Q86VQ3 553 aa23.8■■□□□ 1.4
VPS4A-202ENST00000562754 SETBP1Q9Y6X0 1596 aa23.8■■□□□ 1.4
VPS4A-202ENST00000562754 SETD1AO15047 1707 aaKnown RBP23.79■■□□□ 1.4
VPS4A-202ENST00000562754 KIAA1210Q9ULL0 1709 aa23.79■■□□□ 1.4
VPS4A-202ENST00000562754 PLEKHG1Q9ULL1 1385 aa23.78■■□□□ 1.4
VPS4A-202ENST00000562754 EID1Q9Y6B2 187 aa23.78■■□□□ 1.4
VPS4A-202ENST00000562754 LAMC1P11047 1609 aa23.77■■□□□ 1.4
VPS4A-202ENST00000562754 RALGAPBQ86X10 1494 aa23.77■■□□□ 1.4
VPS4A-202ENST00000562754 HDGFP51858 240 aaKnown RBP23.77■■□□□ 1.4
VPS4A-202ENST00000562754 STRCQ7RTU9 1775 aa23.76■■□□□ 1.39
VPS4A-202ENST00000562754 ANKLE2Q86XL3 938 aa23.76■■□□□ 1.39
VPS4A-202ENST00000562754 ALKQ9UM73 1620 aa23.75■■□□□ 1.39
VPS4A-202ENST00000562754 SENP3Q9H4L4 574 aaPredicted RBP23.75■■□□□ 1.39
VPS4A-202ENST00000562754 MED14O60244 1454 aa23.75■■□□□ 1.39
VPS4A-202ENST00000562754 ASXL1Q8IXJ9 1541 aa23.74■■□□□ 1.39
VPS4A-202ENST00000562754 ADAMTS13Q76LX8 1427 aa23.74■■□□□ 1.39
VPS4A-202ENST00000562754 NCKAP5LQ9HCH0 1330 aa23.73■■□□□ 1.39
VPS4A-202ENST00000562754 NPHP4O75161 1426 aaPredicted RBP23.72■■□□□ 1.39
VPS4A-202ENST00000562754 ADGRB1O14514 1584 aa23.7■■□□□ 1.38
VPS4A-202ENST00000562754 DIP2AQ14689 1571 aa23.7■■□□□ 1.38
VPS4A-202ENST00000562754 CFAP70Q5T0N1 1121 aa23.7■■□□□ 1.38
VPS4A-202ENST00000562754 C14orf93Q9H972 538 aaKnown RBP23.69■■□□□ 1.38
VPS4A-202ENST00000562754 GPRASP1Q5JY77 1395 aa23.67■■□□□ 1.38
VPS4A-202ENST00000562754 NBPF1Q3BBV0 1214 aa23.67■■□□□ 1.38
VPS4A-202ENST00000562754 AEBP2Q6ZN18 517 aaPredicted RBP23.67■■□□□ 1.38
VPS4A-202ENST00000562754 ROCK2O75116 1388 aaKnown RBP23.65■■□□□ 1.38
VPS4A-202ENST00000562754 BCANQ96GW7 911 aa23.65■■□□□ 1.38
VPS4A-202ENST00000562754 SLC26A8Q96RN1 970 aa23.63■■□□□ 1.37
VPS4A-202ENST00000562754 METP08581 1390 aa23.63■■□□□ 1.37
VPS4A-202ENST00000562754 TMEM132EQ6IEE7 984 aa23.6■■□□□ 1.37
VPS4A-202ENST00000562754 TBX22Q9Y458 520 aa23.6■■□□□ 1.37
VPS4A-202ENST00000562754 KNDC1Q76NI1 1749 aa23.58■■□□□ 1.37
VPS4A-202ENST00000562754 XRN1Q8IZH2 1706 aaKnown RBP23.58■■□□□ 1.37
VPS4A-202ENST00000562754 PTPRUQ92729 1446 aa23.58■■□□□ 1.36
VPS4A-202ENST00000562754 CARD11Q9BXL7 1154 aa23.57■■□□□ 1.36
VPS4A-202ENST00000562754 YTHDC2Q9H6S0 1430 aaKnown RBP23.57■■□□□ 1.36
VPS4A-202ENST00000562754 ARHGEF28Q8N1W1 1705 aaKnown RBP23.56■■□□□ 1.36
VPS4A-202ENST00000562754 CHD2O14647 1828 aaKnown RBP23.56■■□□□ 1.36
VPS4A-202ENST00000562754 LRPPRCP42704 1394 aaKnown RBP23.55■■□□□ 1.36
VPS4A-202ENST00000562754 PIK3R4Q99570 1358 aa23.54■■□□□ 1.36
VPS4A-202ENST00000562754 NWD1Q149M9 1564 aa23.54■■□□□ 1.36
VPS4A-202ENST00000562754 CPS1P31327 1500 aa23.53■■□□□ 1.36
VPS4A-202ENST00000562754 USP47Q96K76 1375 aa23.52■■□□□ 1.36
VPS4A-202ENST00000562754 TECPR2O15040 1411 aa23.52■■□□□ 1.36
VPS4A-202ENST00000562754 DLC1Q96QB1 1528 aa23.51■■□□□ 1.35
VPS4A-202ENST00000562754 STRCP1A6NGW2 1772 aa23.5■■□□□ 1.35
VPS4A-202ENST00000562754 ABCC11Q96J66 1382 aa23.5■■□□□ 1.35
VPS4A-202ENST00000562754 STK26Q9P289 416 aa23.49■■□□□ 1.35
VPS4A-202ENST00000562754 TRAK1Q9UPV9 953 aa23.48■■□□□ 1.35
VPS4A-202ENST00000562754 PTCH1Q13635 1447 aa23.46■■□□□ 1.35
VPS4A-202ENST00000562754 ROBO2Q9HCK4 1378 aa23.45■■□□□ 1.34
VPS4A-202ENST00000562754 AMOTL2Q9Y2J4 779 aa23.45■■□□□ 1.34
VPS4A-202ENST00000562754 DMRT2Q9Y5R5 561 aa23.45■■□□□ 1.34
VPS4A-202ENST00000562754 QRICH2Q9H0J4 1663 aa23.44■■□□□ 1.34
VPS4A-202ENST00000562754 EIF3AQ14152 1382 aaKnown RBP23.44■■□□□ 1.34
VPS4A-202ENST00000562754 HSPA5P11021 654 aaKnown RBP23.44■■□□□ 1.34
VPS4A-202ENST00000562754 KCNA6P17658 529 aa23.43■■□□□ 1.34
VPS4A-202ENST00000562754 EIF4G2P78344 907 aaKnown RBP eCLIP23.43■■□□□ 1.34
VPS4A-202ENST00000562754 NKTRP30414 1462 aaKnown RBP23.43■■□□□ 1.34
VPS4A-202ENST00000562754 FAM135BQ49AJ0 1406 aa23.42■■□□□ 1.34
VPS4A-202ENST00000562754 PLEKHH1Q9ULM0 1364 aa23.42■■□□□ 1.34
VPS4A-202ENST00000562754 ZNF335Q9H4Z2 1342 aaPredicted RBP23.39■■□□□ 1.34
VPS4A-202ENST00000562754 ST20-MTHFSA0A0A6YYL1 179 aa23.39■■□□□ 1.33
VPS4A-202ENST00000562754 CENPJQ9HC77 1338 aaPredicted RBP23.38■■□□□ 1.33
VPS4A-202ENST00000562754 SIRT1Q96EB6 747 aa23.38■■□□□ 1.33
VPS4A-202ENST00000562754 PRAM1Q96QH2 718 aa23.38■■□□□ 1.33
VPS4A-202ENST00000562754 HIRIP3Q9BW71 556 aaPredicted RBP23.38■■□□□ 1.33
VPS4A-202ENST00000562754 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.37■■□□□ 1.33
VPS4A-202ENST00000562754 WAPLQ7Z5K2 1190 aa23.37■■□□□ 1.33
VPS4A-202ENST00000562754 TESK2Q96S53 571 aa23.35■■□□□ 1.33
VPS4A-202ENST00000562754 SBNO2Q9Y2G9 1366 aa23.35■■□□□ 1.33
VPS4A-202ENST00000562754 NALCNQ8IZF0 1738 aa23.34■■□□□ 1.33
VPS4A-202ENST00000562754 SAFB2Q14151 953 aaKnown RBP eCLIP23.34■■□□□ 1.33
VPS4A-202ENST00000562754 POGKQ9P215 609 aa23.34■■□□□ 1.33
VPS4A-202ENST00000562754 XIRP1Q702N8 1843 aaKnown RBP23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms