RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 KDM5AP29375 1690 aaKnown RBP16.09■□□□□ 0.17
SNX1-212ENST00000560861 KDM2AQ9Y2K7 1162 aa16.08■□□□□ 0.16
SNX1-212ENST00000560861 RPGRIP1LQ68CZ1 1315 aa16.07■□□□□ 0.16
SNX1-212ENST00000560861 RIMS1Q86UR5 1692 aaKnown RBP16.06■□□□□ 0.16
SNX1-212ENST00000560861 A2ML1A8K2U0 1454 aa16.05■□□□□ 0.16
SNX1-212ENST00000560861 ZFYVE9O95405 1425 aa16.05■□□□□ 0.16
SNX1-212ENST00000560861 TNRQ92752 1358 aa16.05■□□□□ 0.16
SNX1-212ENST00000560861 ESF1Q9H501 851 aaKnown RBP16.05■□□□□ 0.16
SNX1-212ENST00000560861 ZNF326Q5BKZ1 582 aaKnown RBP16.04■□□□□ 0.16
SNX1-212ENST00000560861 UBR1Q8IWV7 1749 aa16.03■□□□□ 0.16
SNX1-212ENST00000560861 IQGAP1P46940 1657 aa16.03■□□□□ 0.16
SNX1-212ENST00000560861 HSPA5P11021 654 aaKnown RBP16.03■□□□□ 0.16
SNX1-212ENST00000560861 PIK3C2GO75747 1445 aa16.02■□□□□ 0.16
SNX1-212ENST00000560861 ADGRF5Q8IZF2 1346 aa16.02■□□□□ 0.16
SNX1-212ENST00000560861 NLRP1Q9C000 1473 aa16.02■□□□□ 0.15
SNX1-212ENST00000560861 EIF4G2P78344 907 aaKnown RBP eCLIP16.01■□□□□ 0.15
SNX1-212ENST00000560861 POLR1AO95602 1720 aaPredicted RBP16.01■□□□□ 0.15
SNX1-212ENST00000560861 PTPRMP28827 1452 aa16.01■□□□□ 0.15
SNX1-212ENST00000560861 USP47Q96K76 1375 aa16■□□□□ 0.15
SNX1-212ENST00000560861 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
SNX1-212ENST00000560861 NBPF1Q3BBV0 1214 aa16■□□□□ 0.15
SNX1-212ENST00000560861 SETBP1Q9Y6X0 1596 aa16■□□□□ 0.15
SNX1-212ENST00000560861 ROCK2O75116 1388 aaKnown RBP16■□□□□ 0.15
SNX1-212ENST00000560861 MYO3AQ8NEV4 1616 aa15.99■□□□□ 0.15
SNX1-212ENST00000560861 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
SNX1-212ENST00000560861 ADGRB1O14514 1584 aa15.99■□□□□ 0.15
SNX1-212ENST00000560861 HIRIP3Q9BW71 556 aaPredicted RBP15.97■□□□□ 0.15
SNX1-212ENST00000560861 CARD11Q9BXL7 1154 aa15.97■□□□□ 0.15
SNX1-212ENST00000560861 ASXL1Q8IXJ9 1541 aa15.95■□□□□ 0.14
SNX1-212ENST00000560861 SETD1AO15047 1707 aaKnown RBP15.95■□□□□ 0.14
SNX1-212ENST00000560861 ZNF142P52746 1687 aaPredicted RBP15.95■□□□□ 0.14
SNX1-212ENST00000560861 RIMS2Q9UQ26 1411 aa15.94■□□□□ 0.14
SNX1-212ENST00000560861 NRXN3Q9Y4C0 1643 aa15.94■□□□□ 0.14
SNX1-212ENST00000560861 C14orf93Q9H972 538 aaKnown RBP15.94■□□□□ 0.14
SNX1-212ENST00000560861 SCAF11Q99590 1463 aaKnown RBP15.94■□□□□ 0.14
SNX1-212ENST00000560861 SETD1BQ9UPS6 1966 aaKnown RBP15.93■□□□□ 0.14
SNX1-212ENST00000560861 ARHGAP23Q9P227 1491 aa15.93■□□□□ 0.14
SNX1-212ENST00000560861 VGFO15240 615 aaPredicted RBP15.93■□□□□ 0.14
SNX1-212ENST00000560861 CFAP70Q5T0N1 1121 aa15.93■□□□□ 0.14
SNX1-212ENST00000560861 SLIT1O75093 1534 aa15.93■□□□□ 0.14
SNX1-212ENST00000560861 CEP170BQ9Y4F5 1589 aaPredicted RBP15.92■□□□□ 0.14
SNX1-212ENST00000560861 TMEM2Q9UHN6 1383 aa15.91■□□□□ 0.14
SNX1-212ENST00000560861 POTEDQ86YR6 584 aa15.91■□□□□ 0.14
SNX1-212ENST00000560861 C11orf95C9JLR9 678 aaPredicted RBP15.9■□□□□ 0.14
SNX1-212ENST00000560861 DIEXFQ68CQ4 756 aaKnown RBP15.9■□□□□ 0.14
SNX1-212ENST00000560861 WASHC2AQ641Q2 1341 aa15.9■□□□□ 0.14
SNX1-212ENST00000560861 ALKQ9UM73 1620 aa15.9■□□□□ 0.14
SNX1-212ENST00000560861 CCDC7Q96M83 1385 aa15.89■□□□□ 0.13
SNX1-212ENST00000560861 LMTK3Q96Q04 1460 aa15.89■□□□□ 0.13
SNX1-212ENST00000560861 ST20-MTHFSA0A0A6YYL1 179 aa15.88■□□□□ 0.13
SNX1-212ENST00000560861 NUTM2DQ5VT03 806 aaPredicted RBP15.88■□□□□ 0.13
SNX1-212ENST00000560861 STAG3Q9UJ98 1225 aa15.88■□□□□ 0.13
SNX1-212ENST00000560861 TESK2Q96S53 571 aa15.87■□□□□ 0.13
SNX1-212ENST00000560861 ARHGEF28Q8N1W1 1705 aaKnown RBP15.87■□□□□ 0.13
SNX1-212ENST00000560861 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.86■□□□□ 0.13
SNX1-212ENST00000560861 KIF7Q2M1P5 1343 aa15.85■□□□□ 0.13
SNX1-212ENST00000560861 MED14O60244 1454 aa15.84■□□□□ 0.13
SNX1-212ENST00000560861 PLEKHG1Q9ULL1 1385 aa15.83■□□□□ 0.12
SNX1-212ENST00000560861 ADAMTS13Q76LX8 1427 aa15.83■□□□□ 0.12
SNX1-212ENST00000560861 EIF3AQ14152 1382 aaKnown RBP15.82■□□□□ 0.12
SNX1-212ENST00000560861 SBNO2Q9Y2G9 1366 aa15.82■□□□□ 0.12
SNX1-212ENST00000560861 LTKP29376 864 aa15.81■□□□□ 0.12
SNX1-212ENST00000560861 KNDC1Q76NI1 1749 aa15.81■□□□□ 0.12
SNX1-212ENST00000560861 DLC1Q96QB1 1528 aa15.81■□□□□ 0.12
SNX1-212ENST00000560861 QRICH2Q9H0J4 1663 aa15.81■□□□□ 0.12
SNX1-212ENST00000560861 YTHDC2Q9H6S0 1430 aaKnown RBP15.8■□□□□ 0.12
SNX1-212ENST00000560861 DISP3Q9P2K9 1392 aa15.8■□□□□ 0.12
SNX1-212ENST00000560861 DDX10Q13206 875 aaKnown RBP15.8■□□□□ 0.12
SNX1-212ENST00000560861 TMEM132EQ6IEE7 984 aa15.8■□□□□ 0.12
SNX1-212ENST00000560861 HDGFP51858 240 aaKnown RBP15.79■□□□□ 0.12
SNX1-212ENST00000560861 ILDR1Q86SU0 546 aaPredicted RBP15.79■□□□□ 0.12
SNX1-212ENST00000560861 THEMISQ8N1K5 641 aaPredicted RBP15.79■□□□□ 0.12
SNX1-212ENST00000560861 LRPPRCP42704 1394 aaKnown RBP15.77■□□□□ 0.12
SNX1-212ENST00000560861 DIP2AQ14689 1571 aa15.77■□□□□ 0.11
SNX1-212ENST00000560861 TECPR2O15040 1411 aa15.77■□□□□ 0.11
SNX1-212ENST00000560861 METP08581 1390 aa15.75■□□□□ 0.11
SNX1-212ENST00000560861 CENPJQ9HC77 1338 aaPredicted RBP15.75■□□□□ 0.11
SNX1-212ENST00000560861 CPS1P31327 1500 aa15.75■□□□□ 0.11
SNX1-212ENST00000560861 TXNDC2Q86VQ3 553 aa15.75■□□□□ 0.11
SNX1-212ENST00000560861 MYOM1P52179 1685 aa15.75■□□□□ 0.11
SNX1-212ENST00000560861 ABCC11Q96J66 1382 aa15.75■□□□□ 0.11
SNX1-212ENST00000560861 TRAK1Q9UPV9 953 aa15.74■□□□□ 0.11
SNX1-212ENST00000560861 EID1Q9Y6B2 187 aa15.73■□□□□ 0.11
SNX1-212ENST00000560861 TULP4Q9NRJ4 1543 aa15.73■□□□□ 0.11
SNX1-212ENST00000560861 STRCQ7RTU9 1775 aa15.72■□□□□ 0.11
SNX1-212ENST00000560861 TMF1P82094 1093 aa15.72■□□□□ 0.11
SNX1-212ENST00000560861 MIER1Q8N108 512 aa15.72■□□□□ 0.11
SNX1-212ENST00000560861 XRN1Q8IZH2 1706 aaKnown RBP15.71■□□□□ 0.11
SNX1-212ENST00000560861 PTPRUQ92729 1446 aa15.7■□□□□ 0.1
SNX1-212ENST00000560861 FAM135BQ49AJ0 1406 aa15.69■□□□□ 0.1
SNX1-212ENST00000560861 SLC24A1O60721 1099 aa15.69■□□□□ 0.1
SNX1-212ENST00000560861 HSPA2P54652 639 aa15.69■□□□□ 0.1
SNX1-212ENST00000560861 SIRT1Q96EB6 747 aa15.69■□□□□ 0.1
SNX1-212ENST00000560861 TBX22Q9Y458 520 aa15.69■□□□□ 0.1
SNX1-212ENST00000560861 STK26Q9P289 416 aa15.67■□□□□ 0.1
SNX1-212ENST00000560861 CHD2O14647 1828 aaKnown RBP15.66■□□□□ 0.1
SNX1-212ENST00000560861 PIK3R4Q99570 1358 aa15.66■□□□□ 0.1
SNX1-212ENST00000560861 PLEKHH1Q9ULM0 1364 aa15.66■□□□□ 0.1
SNX1-212ENST00000560861 ANKLE2Q86XL3 938 aa15.66■□□□□ 0.1
SNX1-212ENST00000560861 CDCA8Q53HL2 280 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms