RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 RIMS2Q9UQ26 1411 aa18.85■□□□□ 0.61
SMAD3-208ENST00000558827 TOM1O60784 492 aa18.84■□□□□ 0.61
SMAD3-208ENST00000558827 LRRC7Q96NW7 1537 aa18.84■□□□□ 0.61
SMAD3-208ENST00000558827 TMEM131LA2VDJ0 1609 aa18.83■□□□□ 0.61
SMAD3-208ENST00000558827 KDM5AP29375 1690 aaKnown RBP18.82■□□□□ 0.6
SMAD3-208ENST00000558827 ZNF326Q5BKZ1 582 aaKnown RBP18.81■□□□□ 0.6
SMAD3-208ENST00000558827 HDGFP51858 240 aaKnown RBP18.8■□□□□ 0.6
SMAD3-208ENST00000558827 FOXD1Q16676 465 aa18.8■□□□□ 0.6
SMAD3-208ENST00000558827 PROSER2Q86WR7 435 aaPredicted RBP18.8■□□□□ 0.6
SMAD3-208ENST00000558827 ZFYVE9O95405 1425 aa18.8■□□□□ 0.6
SMAD3-208ENST00000558827 KCNA6P17658 529 aa18.79■□□□□ 0.6
SMAD3-208ENST00000558827 HSPA1LP34931 641 aa18.79■□□□□ 0.6
SMAD3-208ENST00000558827 SLC4A1APQ9BWU0 796 aaKnown RBP18.79■□□□□ 0.6
SMAD3-208ENST00000558827 HFM1A2PYH4 1435 aa18.79■□□□□ 0.6
SMAD3-208ENST00000558827 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.77■□□□□ 0.6
SMAD3-208ENST00000558827 SPHKAPQ2M3C7 1700 aa18.77■□□□□ 0.59
SMAD3-208ENST00000558827 PLEKHG1Q9ULL1 1385 aa18.76■□□□□ 0.59
SMAD3-208ENST00000558827 TMEM94Q12767 1356 aa18.75■□□□□ 0.59
SMAD3-208ENST00000558827 DISP3Q9P2K9 1392 aa18.74■□□□□ 0.59
SMAD3-208ENST00000558827 ALKQ9UM73 1620 aa18.74■□□□□ 0.59
SMAD3-208ENST00000558827 XIRP1Q702N8 1843 aaKnown RBP18.73■□□□□ 0.59
SMAD3-208ENST00000558827 CLTCL1P53675 1640 aa18.71■□□□□ 0.59
SMAD3-208ENST00000558827 TBX22Q9Y458 520 aa18.71■□□□□ 0.59
SMAD3-208ENST00000558827 ADAMTS13Q76LX8 1427 aa18.69■□□□□ 0.58
SMAD3-208ENST00000558827 MPHOSPH9Q99550 1183 aa18.68■□□□□ 0.58
SMAD3-208ENST00000558827 C14orf37Q86TY3 774 aa18.67■□□□□ 0.58
SMAD3-208ENST00000558827 TRPM2O94759 1503 aa18.67■□□□□ 0.58
SMAD3-208ENST00000558827 CHD2O14647 1828 aaKnown RBP18.66■□□□□ 0.58
SMAD3-208ENST00000558827 AMOTL2Q9Y2J4 779 aa18.65■□□□□ 0.58
SMAD3-208ENST00000558827 RGL3Q3MIN7 710 aa18.64■□□□□ 0.57
SMAD3-208ENST00000558827 ILDR2Q71H61 639 aa18.64■□□□□ 0.57
SMAD3-208ENST00000558827 KIF1BO60333 1816 aa18.64■□□□□ 0.57
SMAD3-208ENST00000558827 SETD5Q9C0A6 1442 aa18.64■□□□□ 0.57
SMAD3-208ENST00000558827 NWD1Q149M9 1564 aa18.64■□□□□ 0.57
SMAD3-208ENST00000558827 PTPRUQ92729 1446 aa18.63■□□□□ 0.57
SMAD3-208ENST00000558827 NKTRP30414 1462 aaKnown RBP18.61■□□□□ 0.57
SMAD3-208ENST00000558827 MSH6P52701 1360 aa18.61■□□□□ 0.57
SMAD3-208ENST00000558827 NEXMIFQ5QGS0 1516 aa18.6■□□□□ 0.57
SMAD3-208ENST00000558827 METP08581 1390 aa18.6■□□□□ 0.57
SMAD3-208ENST00000558827 RAB3GAP2Q9H2M9 1393 aa18.59■□□□□ 0.57
SMAD3-208ENST00000558827 NRXN3Q9Y4C0 1643 aa18.59■□□□□ 0.57
SMAD3-208ENST00000558827 SLAIN2Q9P270 581 aa18.58■□□□□ 0.56
SMAD3-208ENST00000558827 DIP2AQ14689 1571 aa18.56■□□□□ 0.56
SMAD3-208ENST00000558827 VGFO15240 615 aaPredicted RBP18.56■□□□□ 0.56
SMAD3-208ENST00000558827 PIK3R4Q99570 1358 aa18.55■□□□□ 0.56
SMAD3-208ENST00000558827 CCDC144AA2RUR9 1427 aa18.55■□□□□ 0.56
SMAD3-208ENST00000558827 SETBP1Q9Y6X0 1596 aa18.55■□□□□ 0.56
SMAD3-208ENST00000558827 ADGRF5Q8IZF2 1346 aa18.53■□□□□ 0.56
SMAD3-208ENST00000558827 ATF3P18847 181 aa18.53■□□□□ 0.56
SMAD3-208ENST00000558827 FAM135BQ49AJ0 1406 aa18.53■□□□□ 0.56
SMAD3-208ENST00000558827 ROBO1Q9Y6N7 1651 aa18.53■□□□□ 0.56
SMAD3-208ENST00000558827 RPGRIP1LQ68CZ1 1315 aa18.52■□□□□ 0.56
SMAD3-208ENST00000558827 C19orf44Q9H6X5 657 aa18.52■□□□□ 0.56
SMAD3-208ENST00000558827 MED1Q15648 1581 aaPredicted RBP18.51■□□□□ 0.55
SMAD3-208ENST00000558827 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.5■□□□□ 0.55
SMAD3-208ENST00000558827 CADPS2Q86UW7 1296 aa18.49■□□□□ 0.55
SMAD3-208ENST00000558827 STK26Q9P289 416 aa18.49■□□□□ 0.55
SMAD3-208ENST00000558827 PPLO60437 1756 aa18.49■□□□□ 0.55
SMAD3-208ENST00000558827 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
SMAD3-208ENST00000558827 XRN1Q8IZH2 1706 aaKnown RBP18.48■□□□□ 0.55
SMAD3-208ENST00000558827 TMEM132EQ6IEE7 984 aa18.47■□□□□ 0.55
SMAD3-208ENST00000558827 SPATA31E1Q6ZUB1 1445 aa18.47■□□□□ 0.55
SMAD3-208ENST00000558827 NCOA3Q9Y6Q9 1424 aa18.46■□□□□ 0.55
SMAD3-208ENST00000558827 ROBO2Q9HCK4 1378 aa18.44■□□□□ 0.54
SMAD3-208ENST00000558827 DDX17Q92841 729 aaKnown RBP18.43■□□□□ 0.54
SMAD3-208ENST00000558827 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
SMAD3-208ENST00000558827 BRINP3Q76B58 766 aa18.42■□□□□ 0.54
SMAD3-208ENST00000558827 KDM2AQ9Y2K7 1162 aa18.42■□□□□ 0.54
SMAD3-208ENST00000558827 PHLPP1O60346 1717 aa18.42■□□□□ 0.54
SMAD3-208ENST00000558827 WAPLQ7Z5K2 1190 aa18.41■□□□□ 0.54
SMAD3-208ENST00000558827 ACIN1Q9UKV3 1341 aaKnown RBP18.41■□□□□ 0.54
SMAD3-208ENST00000558827 ANKRD30BQ9BXX2 1392 aa18.4■□□□□ 0.54
SMAD3-208ENST00000558827 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.53
SMAD3-208ENST00000558827 ADGRL3Q9HAR2 1447 aa18.39■□□□□ 0.53
SMAD3-208ENST00000558827 MST1RQ04912 1400 aa18.38■□□□□ 0.53
SMAD3-208ENST00000558827 NALCNQ8IZF0 1738 aa18.37■□□□□ 0.53
SMAD3-208ENST00000558827 IFT172Q9UG01 1749 aa18.37■□□□□ 0.53
SMAD3-208ENST00000558827 NUTM2FA1L443 756 aa18.37■□□□□ 0.53
SMAD3-208ENST00000558827 SOCS7O14512 581 aa18.36■□□□□ 0.53
SMAD3-208ENST00000558827 RGS17Q9UGC6 210 aaPredicted RBP18.36■□□□□ 0.53
SMAD3-208ENST00000558827 ORAI2Q96SN7 254 aa18.35■□□□□ 0.53
SMAD3-208ENST00000558827 PTCH1Q13635 1447 aa18.34■□□□□ 0.53
SMAD3-208ENST00000558827 JCADQ9P266 1359 aa18.34■□□□□ 0.53
SMAD3-208ENST00000558827 PLEKHH1Q9ULM0 1364 aa18.34■□□□□ 0.53
SMAD3-208ENST00000558827 NUTM2BA6NNL0 878 aaPredicted RBP18.34■□□□□ 0.53
SMAD3-208ENST00000558827 NUTM2EB1AL46 878 aaPredicted RBP18.34■□□□□ 0.53
SMAD3-208ENST00000558827 HRCP23327 699 aa18.34■□□□□ 0.53
SMAD3-208ENST00000558827 NUTM2AQ8IVF1 878 aaPredicted RBP18.34■□□□□ 0.53
SMAD3-208ENST00000558827 DCAF11Q8TEB1 546 aa18.34■□□□□ 0.53
SMAD3-208ENST00000558827 COL16A1Q07092 1604 aaPredicted RBP18.34■□□□□ 0.53
SMAD3-208ENST00000558827 ASXL1Q8IXJ9 1541 aa18.33■□□□□ 0.53
SMAD3-208ENST00000558827 PIK3C2GO75747 1445 aa18.33■□□□□ 0.53
SMAD3-208ENST00000558827 DCCP43146 1447 aa18.33■□□□□ 0.53
SMAD3-208ENST00000558827 SAFB2Q14151 953 aaKnown RBP eCLIP18.33■□□□□ 0.52
SMAD3-208ENST00000558827 C14orf93Q9H972 538 aaKnown RBP18.33■□□□□ 0.52
SMAD3-208ENST00000558827 LRPPRCP42704 1394 aaKnown RBP18.32■□□□□ 0.52
SMAD3-208ENST00000558827 C1orf167Q5SNV9 1468 aa18.31■□□□□ 0.52
SMAD3-208ENST00000558827 MEX3CQ5U5Q3 659 aaKnown RBP18.3■□□□□ 0.52
SMAD3-208ENST00000558827 YTHDC2Q9H6S0 1430 aaKnown RBP18.3■□□□□ 0.52
SMAD3-208ENST00000558827 POTEAQ6S8J7 498 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms