RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 LRRC7Q96NW7 1537 aa12.18□□□□□ -0.46
VTI1B-206ENST00000556461 FOXD1Q16676 465 aa12.18□□□□□ -0.46
VTI1B-206ENST00000556461 SLC4A1APQ9BWU0 796 aaKnown RBP12.18□□□□□ -0.46
VTI1B-206ENST00000556461 SPHKAPQ2M3C7 1700 aa12.17□□□□□ -0.46
VTI1B-206ENST00000556461 CLTCL1P53675 1640 aa12.17□□□□□ -0.46
VTI1B-206ENST00000556461 PLEKHG1Q9ULL1 1385 aa12.17□□□□□ -0.46
VTI1B-206ENST00000556461 PPP1R15AO75807 674 aaPredicted RBP12.16□□□□□ -0.46
VTI1B-206ENST00000556461 BCANQ96GW7 911 aa12.16□□□□□ -0.46
VTI1B-206ENST00000556461 TRPM2O94759 1503 aa12.16□□□□□ -0.46
VTI1B-206ENST00000556461 ALKQ9UM73 1620 aa12.15□□□□□ -0.47
VTI1B-206ENST00000556461 ADAMTS13Q76LX8 1427 aa12.14□□□□□ -0.47
VTI1B-206ENST00000556461 SETD5Q9C0A6 1442 aa12.14□□□□□ -0.47
VTI1B-206ENST00000556461 KCNA6P17658 529 aa12.14□□□□□ -0.47
VTI1B-206ENST00000556461 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.14□□□□□ -0.47
VTI1B-206ENST00000556461 RBM33Q96EV2 1170 aaKnown RBP12.14□□□□□ -0.47
VTI1B-206ENST00000556461 MPHOSPH9Q99550 1183 aa12.14□□□□□ -0.47
VTI1B-206ENST00000556461 HDGFP51858 240 aaKnown RBP12.12□□□□□ -0.47
VTI1B-206ENST00000556461 PIP4K2BP78356 416 aa12.12□□□□□ -0.47
VTI1B-206ENST00000556461 ZNF326Q5BKZ1 582 aaKnown RBP12.12□□□□□ -0.47
VTI1B-206ENST00000556461 RAB3GAP2Q9H2M9 1393 aa12.12□□□□□ -0.47
VTI1B-206ENST00000556461 TMEM94Q12767 1356 aa12.11□□□□□ -0.47
VTI1B-206ENST00000556461 TBX22Q9Y458 520 aa12.11□□□□□ -0.47
VTI1B-206ENST00000556461 SCAF1Q9H7N4 1312 aaKnown RBP12.11□□□□□ -0.47
VTI1B-206ENST00000556461 NWD1Q149M9 1564 aa12.1□□□□□ -0.47
VTI1B-206ENST00000556461 TOM1O60784 492 aa12.1□□□□□ -0.47
VTI1B-206ENST00000556461 NEXMIFQ5QGS0 1516 aa12.1□□□□□ -0.47
VTI1B-206ENST00000556461 XIRP1Q702N8 1843 aaKnown RBP12.09□□□□□ -0.47
VTI1B-206ENST00000556461 PROSER2Q86WR7 435 aaPredicted RBP12.09□□□□□ -0.47
VTI1B-206ENST00000556461 PTPRUQ92729 1446 aa12.09□□□□□ -0.47
VTI1B-206ENST00000556461 NRXN3Q9Y4C0 1643 aa12.08□□□□□ -0.48
VTI1B-206ENST00000556461 HSPA1LP34931 641 aa12.08□□□□□ -0.48
VTI1B-206ENST00000556461 NKTRP30414 1462 aaKnown RBP12.07□□□□□ -0.48
VTI1B-206ENST00000556461 SETBP1Q9Y6X0 1596 aa12.06□□□□□ -0.48
VTI1B-206ENST00000556461 CHD2O14647 1828 aaKnown RBP12.06□□□□□ -0.48
VTI1B-206ENST00000556461 KIF1BO60333 1816 aa12.06□□□□□ -0.48
VTI1B-206ENST00000556461 METP08581 1390 aa12.05□□□□□ -0.48
VTI1B-206ENST00000556461 DIP2AQ14689 1571 aa12.05□□□□□ -0.48
VTI1B-206ENST00000556461 AMOTL2Q9Y2J4 779 aa12.05□□□□□ -0.48
VTI1B-206ENST00000556461 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
VTI1B-206ENST00000556461 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
VTI1B-206ENST00000556461 SPATA31E1Q6ZUB1 1445 aa12.04□□□□□ -0.48
VTI1B-206ENST00000556461 RGL3Q3MIN7 710 aa12.04□□□□□ -0.48
VTI1B-206ENST00000556461 RPGRIP1LQ68CZ1 1315 aa12.03□□□□□ -0.48
VTI1B-206ENST00000556461 VGFO15240 615 aaPredicted RBP12.02□□□□□ -0.49
VTI1B-206ENST00000556461 ADGRF5Q8IZF2 1346 aa12.02□□□□□ -0.49
VTI1B-206ENST00000556461 XRN1Q8IZH2 1706 aaKnown RBP12□□□□□ -0.49
VTI1B-206ENST00000556461 HRCP23327 699 aa12□□□□□ -0.49
VTI1B-206ENST00000556461 ACIN1Q9UKV3 1341 aaKnown RBP12□□□□□ -0.49
VTI1B-206ENST00000556461 MSH6P52701 1360 aa12□□□□□ -0.49
VTI1B-206ENST00000556461 PPLO60437 1756 aa12□□□□□ -0.49
VTI1B-206ENST00000556461 ANKRD30BQ9BXX2 1392 aa11.99□□□□□ -0.49
VTI1B-206ENST00000556461 SETD1AO15047 1707 aaKnown RBP11.99□□□□□ -0.49
VTI1B-206ENST00000556461 FAM135BQ49AJ0 1406 aa11.98□□□□□ -0.49
VTI1B-206ENST00000556461 NCOA3Q9Y6Q9 1424 aa11.98□□□□□ -0.49
VTI1B-206ENST00000556461 C14orf37Q86TY3 774 aa11.98□□□□□ -0.49
VTI1B-206ENST00000556461 SLAIN2Q9P270 581 aa11.97□□□□□ -0.49
VTI1B-206ENST00000556461 ROBO2Q9HCK4 1378 aa11.96□□□□□ -0.49
VTI1B-206ENST00000556461 DISP3Q9P2K9 1392 aa11.96□□□□□ -0.49
VTI1B-206ENST00000556461 C19orf44Q9H6X5 657 aa11.96□□□□□ -0.49
VTI1B-206ENST00000556461 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.95□□□□□ -0.5
VTI1B-206ENST00000556461 IFT172Q9UG01 1749 aa11.95□□□□□ -0.5
VTI1B-206ENST00000556461 ROBO1Q9Y6N7 1651 aa11.95□□□□□ -0.5
VTI1B-206ENST00000556461 TMEM132EQ6IEE7 984 aa11.94□□□□□ -0.5
VTI1B-206ENST00000556461 ASXL1Q8IXJ9 1541 aa11.94□□□□□ -0.5
VTI1B-206ENST00000556461 PIK3C2GO75747 1445 aa11.94□□□□□ -0.5
VTI1B-206ENST00000556461 ATF3P18847 181 aa11.93□□□□□ -0.5
VTI1B-206ENST00000556461 CADPS2Q86UW7 1296 aa11.93□□□□□ -0.5
VTI1B-206ENST00000556461 PTCH1Q13635 1447 aa11.93□□□□□ -0.5
VTI1B-206ENST00000556461 NRXN1Q9ULB1 1477 aa11.92□□□□□ -0.5
VTI1B-206ENST00000556461 ILDR2Q71H61 639 aa11.92□□□□□ -0.5
VTI1B-206ENST00000556461 STK26Q9P289 416 aa11.92□□□□□ -0.5
VTI1B-206ENST00000556461 PRAG1Q86YV5 1406 aa11.92□□□□□ -0.5
VTI1B-206ENST00000556461 ADGRL3Q9HAR2 1447 aa11.92□□□□□ -0.5
VTI1B-206ENST00000556461 CFAP70Q5T0N1 1121 aa11.91□□□□□ -0.5
VTI1B-206ENST00000556461 MST1RQ04912 1400 aa11.91□□□□□ -0.5
VTI1B-206ENST00000556461 MED1Q15648 1581 aaPredicted RBP11.91□□□□□ -0.5
VTI1B-206ENST00000556461 MYOM2P54296 1465 aa11.9□□□□□ -0.5
VTI1B-206ENST00000556461 DCCP43146 1447 aa11.9□□□□□ -0.5
VTI1B-206ENST00000556461 BRINP3Q76B58 766 aa11.9□□□□□ -0.5
VTI1B-206ENST00000556461 NALCNQ8IZF0 1738 aa11.9□□□□□ -0.5
VTI1B-206ENST00000556461 C14orf93Q9H972 538 aaKnown RBP11.9□□□□□ -0.5
VTI1B-206ENST00000556461 LRPPRCP42704 1394 aaKnown RBP11.9□□□□□ -0.5
VTI1B-206ENST00000556461 DHX57Q6P158 1386 aaKnown RBP11.9□□□□□ -0.5
VTI1B-206ENST00000556461 PLEKHH1Q9ULM0 1364 aa11.9□□□□□ -0.5
VTI1B-206ENST00000556461 WAPLQ7Z5K2 1190 aa11.89□□□□□ -0.51
VTI1B-206ENST00000556461 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
VTI1B-206ENST00000556461 TECPR2O15040 1411 aa11.88□□□□□ -0.51
VTI1B-206ENST00000556461 DCAF11Q8TEB1 546 aa11.88□□□□□ -0.51
VTI1B-206ENST00000556461 ABCC11Q96J66 1382 aa11.88□□□□□ -0.51
VTI1B-206ENST00000556461 YTHDC2Q9H6S0 1430 aaKnown RBP11.87□□□□□ -0.51
VTI1B-206ENST00000556461 DDX17Q92841 729 aaKnown RBP11.87□□□□□ -0.51
VTI1B-206ENST00000556461 PHLPP1O60346 1717 aa11.86□□□□□ -0.51
VTI1B-206ENST00000556461 COL16A1Q07092 1604 aaPredicted RBP11.86□□□□□ -0.51
VTI1B-206ENST00000556461 C1orf167Q5SNV9 1468 aa11.85□□□□□ -0.51
VTI1B-206ENST00000556461 AHDC1Q5TGY3 1603 aaPredicted RBP11.85□□□□□ -0.51
VTI1B-206ENST00000556461 ORAI2Q96SN7 254 aa11.84□□□□□ -0.51
VTI1B-206ENST00000556461 ADGRB1O14514 1584 aa11.84□□□□□ -0.51
VTI1B-206ENST00000556461 KNDC1Q76NI1 1749 aa11.83□□□□□ -0.52
VTI1B-206ENST00000556461 JCADQ9P266 1359 aa11.83□□□□□ -0.52
VTI1B-206ENST00000556461 SIN3AQ96ST3 1273 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms