RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TESK2Q96S53 571 aa19.02■□□□□ 0.64
CUX1-215ENST00000556210 KIF14Q15058 1648 aa19.01■□□□□ 0.63
CUX1-215ENST00000556210 ANO8Q9HCE9 1232 aaPredicted RBP19.01■□□□□ 0.63
CUX1-215ENST00000556210 DENND4BO75064 1496 aaPredicted RBP19.01■□□□□ 0.63
CUX1-215ENST00000556210 E9PSI1 815 aa19■□□□□ 0.63
CUX1-215ENST00000556210 TSR2Q969E8 191 aaKnown RBP18.98■□□□□ 0.63
CUX1-215ENST00000556210 EIF4G3O43432 1585 aaKnown RBP18.98■□□□□ 0.63
CUX1-215ENST00000556210 PER1O15534 1290 aaPredicted RBP18.98■□□□□ 0.63
CUX1-215ENST00000556210 HDGFL2Q7Z4V5 671 aaPredicted RBP18.97■□□□□ 0.63
CUX1-215ENST00000556210 VGFO15240 615 aaPredicted RBP18.97■□□□□ 0.63
CUX1-215ENST00000556210 HMOX1P09601 288 aa18.97■□□□□ 0.63
CUX1-215ENST00000556210 CENPQQ7L2Z9 268 aaPredicted RBP18.97■□□□□ 0.63
CUX1-215ENST00000556210 CGNL1Q0VF96 1302 aa18.97■□□□□ 0.63
CUX1-215ENST00000556210 BECN1Q14457 450 aa18.96■□□□□ 0.63
CUX1-215ENST00000556210 FBLN1P23142 703 aa18.96■□□□□ 0.63
CUX1-215ENST00000556210 MFAP1P55081 439 aaKnown RBP18.96■□□□□ 0.63
CUX1-215ENST00000556210 TPRNQ4KMQ1 711 aa18.95■□□□□ 0.62
CUX1-215ENST00000556210 SYCP2Q9BX26 1530 aa18.95■□□□□ 0.62
CUX1-215ENST00000556210 USP35Q9P2H5 1018 aa18.95■□□□□ 0.62
CUX1-215ENST00000556210 SPATA31E1Q6ZUB1 1445 aa18.95■□□□□ 0.62
CUX1-215ENST00000556210 EVC2Q86UK5 1308 aa18.94■□□□□ 0.62
CUX1-215ENST00000556210 LMOD2Q6P5Q4 547 aa18.94■□□□□ 0.62
CUX1-215ENST00000556210 MYH16Q9H6N6 1097 aa18.94■□□□□ 0.62
CUX1-215ENST00000556210 PBRM1Q86U86 1689 aa18.94■□□□□ 0.62
CUX1-215ENST00000556210 GZF1Q9H116 711 aaPredicted RBP18.94■□□□□ 0.62
CUX1-215ENST00000556210 TRAPPC8Q9Y2L5 1435 aa18.94■□□□□ 0.62
CUX1-215ENST00000556210 FAM161AQ3B820 660 aa18.93■□□□□ 0.62
CUX1-215ENST00000556210 TERF2IPQ9NYB0 399 aa18.93■□□□□ 0.62
CUX1-215ENST00000556210 BACH2Q9BYV9 841 aa18.92■□□□□ 0.62
CUX1-215ENST00000556210 DNMT1P26358 1616 aaKnown RBP18.91■□□□□ 0.62
CUX1-215ENST00000556210 PRKCSHP14314 528 aaPredicted RBP18.91■□□□□ 0.62
CUX1-215ENST00000556210 FAM69CQ0P6D2 419 aa18.91■□□□□ 0.62
CUX1-215ENST00000556210 PRAM1Q96QH2 718 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 FOXD4L1Q9NU39 408 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 RIPK4P57078 832 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 PRAG1Q86YV5 1406 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 MS4A1P11836 297 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 RUNDC1Q96C34 613 aa18.9■□□□□ 0.62
CUX1-215ENST00000556210 SPINK5Q9NQ38 1064 aaPredicted RBP18.9■□□□□ 0.62
CUX1-215ENST00000556210 DUSP27Q5VZP5 1158 aa18.89■□□□□ 0.61
CUX1-215ENST00000556210 AMER1Q5JTC6 1135 aaPredicted RBP18.89■□□□□ 0.61
CUX1-215ENST00000556210 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
CUX1-215ENST00000556210 RWDD1Q9H446 243 aaPredicted RBP18.89■□□□□ 0.61
CUX1-215ENST00000556210 FAM135AQ9P2D6 1515 aa18.88■□□□□ 0.61
CUX1-215ENST00000556210 RALGAPBQ86X10 1494 aa18.88■□□□□ 0.61
CUX1-215ENST00000556210 GSE1Q14687 1217 aa18.88■□□□□ 0.61
CUX1-215ENST00000556210 SLFN5Q08AF3 891 aa18.87■□□□□ 0.61
CUX1-215ENST00000556210 FBXO31Q5XUX0 539 aaPredicted RBP18.86■□□□□ 0.61
CUX1-215ENST00000556210 WWC1Q8IX03 1113 aa18.86■□□□□ 0.61
CUX1-215ENST00000556210 EXOSC9Q06265 439 aaKnown RBP18.85■□□□□ 0.61
CUX1-215ENST00000556210 CABP1Q9NZU7 370 aa18.85■□□□□ 0.61
CUX1-215ENST00000556210 CARD14Q9BXL6 1004 aa18.84■□□□□ 0.61
CUX1-215ENST00000556210 LTV1Q96GA3 475 aaPredicted RBP18.84■□□□□ 0.61
CUX1-215ENST00000556210 TNNQ9UQP3 1299 aa18.84■□□□□ 0.61
CUX1-215ENST00000556210 DMRT2Q9Y5R5 561 aa18.84■□□□□ 0.61
CUX1-215ENST00000556210 NUP160Q12769 1436 aa18.83■□□□□ 0.61
CUX1-215ENST00000556210 THUMPD2Q9BTF0 503 aaKnown RBP18.83■□□□□ 0.61
CUX1-215ENST00000556210 BRPF3Q9ULD4 1205 aa18.83■□□□□ 0.61
CUX1-215ENST00000556210 ZKSCAN2Q63HK3 967 aa18.83■□□□□ 0.6
CUX1-215ENST00000556210 NFKBIBQ15653 356 aa18.83■□□□□ 0.6
CUX1-215ENST00000556210 WAPLQ7Z5K2 1190 aa18.82■□□□□ 0.6
CUX1-215ENST00000556210 DIAPH1O60610 1272 aaKnown RBP18.82■□□□□ 0.6
CUX1-215ENST00000556210 IDI1Q13907 227 aa18.82■□□□□ 0.6
CUX1-215ENST00000556210 PMFBP1Q8TBY8 1022 aa18.82■□□□□ 0.6
CUX1-215ENST00000556210 NSD3Q9BZ95 1437 aa18.81■□□□□ 0.6
CUX1-215ENST00000556210 PARD3Q8TEW0 1356 aa18.81■□□□□ 0.6
CUX1-215ENST00000556210 PLEKHH1Q9ULM0 1364 aa18.81■□□□□ 0.6
CUX1-215ENST00000556210 SLC4A10Q6U841 1118 aa18.8■□□□□ 0.6
CUX1-215ENST00000556210 TXNDC2Q86VQ3 553 aa18.8■□□□□ 0.6
CUX1-215ENST00000556210 DZIP1LQ8IYY4 767 aaKnown RBP18.8■□□□□ 0.6
CUX1-215ENST00000556210 LNPKQ9C0E8 428 aa18.8■□□□□ 0.6
CUX1-215ENST00000556210 LRRIQ1Q96JM4 1722 aa18.8■□□□□ 0.6
CUX1-215ENST00000556210 NCLP19338 710 aaKnown RBP18.8■□□□□ 0.6
CUX1-215ENST00000556210 C1orf115Q9H7X2 142 aa18.8■□□□□ 0.6
CUX1-215ENST00000556210 KDM5BQ9UGL1 1544 aa18.79■□□□□ 0.6
CUX1-215ENST00000556210 A2MP01023 1474 aa18.79■□□□□ 0.6
CUX1-215ENST00000556210 NECTIN2Q92692 538 aa18.79■□□□□ 0.6
CUX1-215ENST00000556210 TRHP20396 242 aaPredicted RBP18.78■□□□□ 0.6
CUX1-215ENST00000556210 ANKRD45Q5TZF3 282 aa18.78■□□□□ 0.6
CUX1-215ENST00000556210 IPO8O15397 1037 aaKnown RBP18.78■□□□□ 0.6
CUX1-215ENST00000556210 ADGRL1O94910 1474 aa18.77■□□□□ 0.6
CUX1-215ENST00000556210 IGHDP01880 384 aa18.77■□□□□ 0.6
CUX1-215ENST00000556210 NUTM2GQ5VZR2 741 aa18.77■□□□□ 0.6
CUX1-215ENST00000556210 NOS1P29475 1434 aa18.77■□□□□ 0.6
CUX1-215ENST00000556210 GCC2Q8IWJ2 1684 aa18.77■□□□□ 0.59
CUX1-215ENST00000556210 HSP90AB1P08238 724 aaKnown RBP18.77■□□□□ 0.59
CUX1-215ENST00000556210 PRKAR2BP31323 418 aa18.77■□□□□ 0.59
CUX1-215ENST00000556210 PLCH2O75038 1416 aa18.76■□□□□ 0.59
CUX1-215ENST00000556210 FANCAO15360 1455 aa18.76■□□□□ 0.59
CUX1-215ENST00000556210 STAC3Q96MF2 364 aa18.76■□□□□ 0.59
CUX1-215ENST00000556210 FRAT2O75474 233 aaPredicted RBP18.75■□□□□ 0.59
CUX1-215ENST00000556210 CDK19Q9BWU1 502 aa18.75■□□□□ 0.59
CUX1-215ENST00000556210 PDZRN3Q9UPQ7 1066 aa18.75■□□□□ 0.59
CUX1-215ENST00000556210 MBD5Q9P267 1494 aa18.75■□□□□ 0.59
CUX1-215ENST00000556210 PNNQ9H307 717 aaKnown RBP18.74■□□□□ 0.59
CUX1-215ENST00000556210 ITSN2Q9NZM3 1697 aa18.74■□□□□ 0.59
CUX1-215ENST00000556210 RRS1Q15050 365 aaKnown RBP18.74■□□□□ 0.59
CUX1-215ENST00000556210 ADGRL2O95490 1459 aa18.73■□□□□ 0.59
CUX1-215ENST00000556210 NOB1Q9ULX3 412 aaKnown RBP18.72■□□□□ 0.59
CUX1-215ENST00000556210 HSCBQ8IWL3 235 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms