RNA–Protein interactions for RNA: ENST00000554901.1

SPTLC2-203, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 1 (best)

Gene SPTLC2, Length 1,518 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-203ENST00000554901 RGL3Q3MIN7 710 aa23.79■■□□□ 1.4
SPTLC2-203ENST00000554901 TIMELESSQ9UNS1 1208 aa23.79■■□□□ 1.4
SPTLC2-203ENST00000554901 RIMS2Q9UQ26 1411 aa23.79■■□□□ 1.4
SPTLC2-203ENST00000554901 EID1Q9Y6B2 187 aa23.78■■□□□ 1.4
SPTLC2-203ENST00000554901 ANKLE2Q86XL3 938 aa23.77■■□□□ 1.4
SPTLC2-203ENST00000554901 NEXMIFQ5QGS0 1516 aa23.77■■□□□ 1.4
SPTLC2-203ENST00000554901 TONSLQ96HA7 1378 aa23.75■■□□□ 1.39
SPTLC2-203ENST00000554901 VGFO15240 615 aaPredicted RBP23.75■■□□□ 1.39
SPTLC2-203ENST00000554901 SCAF11Q99590 1463 aaKnown RBP23.75■■□□□ 1.39
SPTLC2-203ENST00000554901 HSPA2P54652 639 aa23.74■■□□□ 1.39
SPTLC2-203ENST00000554901 TXNDC2Q86VQ3 553 aa23.74■■□□□ 1.39
SPTLC2-203ENST00000554901 PPLO60437 1756 aa23.72■■□□□ 1.39
SPTLC2-203ENST00000554901 MYOM2P54296 1465 aa23.72■■□□□ 1.39
SPTLC2-203ENST00000554901 IFT172Q9UG01 1749 aa23.72■■□□□ 1.39
SPTLC2-203ENST00000554901 LTKP29376 864 aa23.71■■□□□ 1.39
SPTLC2-203ENST00000554901 L3MBTL2Q969R5 705 aa23.71■■□□□ 1.39
SPTLC2-203ENST00000554901 PPP1R15AO75807 674 aaPredicted RBP23.7■■□□□ 1.38
SPTLC2-203ENST00000554901 MED14O60244 1454 aa23.7■■□□□ 1.38
SPTLC2-203ENST00000554901 DCAF11Q8TEB1 546 aa23.69■■□□□ 1.38
SPTLC2-203ENST00000554901 PLEKHG1Q9ULL1 1385 aa23.68■■□□□ 1.38
SPTLC2-203ENST00000554901 POLR1AO95602 1720 aaPredicted RBP23.67■■□□□ 1.38
SPTLC2-203ENST00000554901 NRXN1Q9ULB1 1477 aa23.66■■□□□ 1.38
SPTLC2-203ENST00000554901 NPHP4O75161 1426 aaPredicted RBP23.64■■□□□ 1.37
SPTLC2-203ENST00000554901 NCKAP5LQ9HCH0 1330 aa23.64■■□□□ 1.37
SPTLC2-203ENST00000554901 NUTM2DQ5VT03 806 aaPredicted RBP23.64■■□□□ 1.37
SPTLC2-203ENST00000554901 ADGRF5Q8IZF2 1346 aa23.63■■□□□ 1.37
SPTLC2-203ENST00000554901 DMRT2Q9Y5R5 561 aa23.63■■□□□ 1.37
SPTLC2-203ENST00000554901 PIK3C2GO75747 1445 aa23.62■■□□□ 1.37
SPTLC2-203ENST00000554901 SETBP1Q9Y6X0 1596 aa23.62■■□□□ 1.37
SPTLC2-203ENST00000554901 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
SPTLC2-203ENST00000554901 KDM2AQ9Y2K7 1162 aa23.62■■□□□ 1.37
SPTLC2-203ENST00000554901 PRAG1Q86YV5 1406 aa23.59■■□□□ 1.37
SPTLC2-203ENST00000554901 IQGAP1P46940 1657 aa23.59■■□□□ 1.37
SPTLC2-203ENST00000554901 DIP2AQ14689 1571 aa23.57■■□□□ 1.36
SPTLC2-203ENST00000554901 ADAMTS13Q76LX8 1427 aa23.56■■□□□ 1.36
SPTLC2-203ENST00000554901 BCANQ96GW7 911 aa23.56■■□□□ 1.36
SPTLC2-203ENST00000554901 TBX22Q9Y458 520 aa23.56■■□□□ 1.36
SPTLC2-203ENST00000554901 NRXN3Q9Y4C0 1643 aa23.55■■□□□ 1.36
SPTLC2-203ENST00000554901 C14orf93Q9H972 538 aaKnown RBP23.54■■□□□ 1.36
SPTLC2-203ENST00000554901 LAMC1P11047 1609 aa23.54■■□□□ 1.36
SPTLC2-203ENST00000554901 ALKQ9UM73 1620 aa23.53■■□□□ 1.36
SPTLC2-203ENST00000554901 PIK3R4Q99570 1358 aa23.52■■□□□ 1.36
SPTLC2-203ENST00000554901 KIAA1210Q9ULL0 1709 aa23.51■■□□□ 1.35
SPTLC2-203ENST00000554901 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
SPTLC2-203ENST00000554901 SLC26A8Q96RN1 970 aa23.5■■□□□ 1.35
SPTLC2-203ENST00000554901 NBPF8Q3BBV2 869 aa23.49■■□□□ 1.35
SPTLC2-203ENST00000554901 CFAP70Q5T0N1 1121 aa23.49■■□□□ 1.35
SPTLC2-203ENST00000554901 SETD1AO15047 1707 aaKnown RBP23.47■■□□□ 1.35
SPTLC2-203ENST00000554901 RALGAPBQ86X10 1494 aa23.45■■□□□ 1.34
SPTLC2-203ENST00000554901 TRPM1Q7Z4N2 1603 aa23.45■■□□□ 1.34
SPTLC2-203ENST00000554901 METP08581 1390 aa23.44■■□□□ 1.34
SPTLC2-203ENST00000554901 SENP3Q9H4L4 574 aaPredicted RBP23.44■■□□□ 1.34
SPTLC2-203ENST00000554901 ADGRB1O14514 1584 aa23.43■■□□□ 1.34
SPTLC2-203ENST00000554901 GPRASP1Q5JY77 1395 aa23.42■■□□□ 1.34
SPTLC2-203ENST00000554901 ASXL1Q8IXJ9 1541 aa23.41■■□□□ 1.34
SPTLC2-203ENST00000554901 ROCK2O75116 1388 aaKnown RBP23.41■■□□□ 1.34
SPTLC2-203ENST00000554901 KCNA6P17658 529 aa23.4■■□□□ 1.34
SPTLC2-203ENST00000554901 LRPPRCP42704 1394 aaKnown RBP23.4■■□□□ 1.34
SPTLC2-203ENST00000554901 NBPF1Q3BBV0 1214 aa23.39■■□□□ 1.34
SPTLC2-203ENST00000554901 YTHDC2Q9H6S0 1430 aaKnown RBP23.38■■□□□ 1.33
SPTLC2-203ENST00000554901 NWD1Q149M9 1564 aa23.38■■□□□ 1.33
SPTLC2-203ENST00000554901 ABCC11Q96J66 1382 aa23.38■■□□□ 1.33
SPTLC2-203ENST00000554901 TMEM132EQ6IEE7 984 aa23.38■■□□□ 1.33
SPTLC2-203ENST00000554901 CHD2O14647 1828 aaKnown RBP23.38■■□□□ 1.33
SPTLC2-203ENST00000554901 TECPR2O15040 1411 aa23.37■■□□□ 1.33
SPTLC2-203ENST00000554901 PTPRUQ92729 1446 aa23.37■■□□□ 1.33
SPTLC2-203ENST00000554901 AMOTL2Q9Y2J4 779 aa23.37■■□□□ 1.33
SPTLC2-203ENST00000554901 NKTRP30414 1462 aaKnown RBP23.35■■□□□ 1.33
SPTLC2-203ENST00000554901 XRN1Q8IZH2 1706 aaKnown RBP23.35■■□□□ 1.33
SPTLC2-203ENST00000554901 SIRT1Q96EB6 747 aa23.34■■□□□ 1.33
SPTLC2-203ENST00000554901 CARD11Q9BXL7 1154 aa23.33■■□□□ 1.33
SPTLC2-203ENST00000554901 PTCH1Q13635 1447 aa23.33■■□□□ 1.33
SPTLC2-203ENST00000554901 DLC1Q96QB1 1528 aa23.33■■□□□ 1.32
SPTLC2-203ENST00000554901 ZNF335Q9H4Z2 1342 aaPredicted RBP23.32■■□□□ 1.32
SPTLC2-203ENST00000554901 KNDC1Q76NI1 1749 aa23.32■■□□□ 1.32
SPTLC2-203ENST00000554901 CPS1P31327 1500 aa23.31■■□□□ 1.32
SPTLC2-203ENST00000554901 FAM135BQ49AJ0 1406 aa23.3■■□□□ 1.32
SPTLC2-203ENST00000554901 STK26Q9P289 416 aa23.3■■□□□ 1.32
SPTLC2-203ENST00000554901 EIF3AQ14152 1382 aaKnown RBP23.28■■□□□ 1.32
SPTLC2-203ENST00000554901 TRAK1Q9UPV9 953 aa23.28■■□□□ 1.32
SPTLC2-203ENST00000554901 NCOA3Q9Y6Q9 1424 aa23.26■■□□□ 1.31
SPTLC2-203ENST00000554901 STRCP1A6NGW2 1772 aa23.26■■□□□ 1.31
SPTLC2-203ENST00000554901 ROBO2Q9HCK4 1378 aa23.26■■□□□ 1.31
SPTLC2-203ENST00000554901 LTBP4Q8N2S1 1624 aa23.25■■□□□ 1.31
SPTLC2-203ENST00000554901 PROSER2Q86WR7 435 aaPredicted RBP23.23■■□□□ 1.31
SPTLC2-203ENST00000554901 ARHGEF28Q8N1W1 1705 aaKnown RBP23.22■■□□□ 1.31
SPTLC2-203ENST00000554901 USP47Q96K76 1375 aa23.22■■□□□ 1.31
SPTLC2-203ENST00000554901 LRRC7Q96NW7 1537 aa23.21■■□□□ 1.31
SPTLC2-203ENST00000554901 PRAM1Q96QH2 718 aa23.21■■□□□ 1.31
SPTLC2-203ENST00000554901 POGKQ9P215 609 aa23.21■■□□□ 1.31
SPTLC2-203ENST00000554901 CENPJQ9HC77 1338 aaPredicted RBP23.19■■□□□ 1.3
SPTLC2-203ENST00000554901 TMEM94Q12767 1356 aa23.19■■□□□ 1.3
SPTLC2-203ENST00000554901 EIF4G2P78344 907 aaKnown RBP eCLIP23.18■■□□□ 1.3
SPTLC2-203ENST00000554901 SLC24A1O60721 1099 aa23.18■■□□□ 1.3
SPTLC2-203ENST00000554901 WAPLQ7Z5K2 1190 aa23.18■■□□□ 1.3
SPTLC2-203ENST00000554901 SBNO2Q9Y2G9 1366 aa23.17■■□□□ 1.3
SPTLC2-203ENST00000554901 PLEKHH1Q9ULM0 1364 aa23.16■■□□□ 1.3
SPTLC2-203ENST00000554901 ADGRL3Q9HAR2 1447 aa23.15■■□□□ 1.3
SPTLC2-203ENST00000554901 ST20-MTHFSA0A0A6YYL1 179 aa23.13■■□□□ 1.29
SPTLC2-203ENST00000554901 IQSEC2Q5JU85 1478 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms