RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 HIC1Q14526 733 aa10.74□□□□□ -0.69
SCFD1-212ENST00000554486 TSKSQ9UJT2 592 aa10.74□□□□□ -0.69
SCFD1-212ENST00000554486 CEP164Q9UPV0 1460 aa10.72□□□□□ -0.69
SCFD1-212ENST00000554486 FAM98CQ17RN3 349 aaKnown RBP10.71□□□□□ -0.69
SCFD1-212ENST00000554486 ANKK1Q8NFD2 765 aa10.71□□□□□ -0.69
SCFD1-212ENST00000554486 ABCC8Q09428 1581 aa10.7□□□□□ -0.7
SCFD1-212ENST00000554486 ERCC6Q03468 1493 aa10.7□□□□□ -0.7
SCFD1-212ENST00000554486 NBPF26B4DH59 902 aa10.7□□□□□ -0.7
SCFD1-212ENST00000554486 ZFRQ96KR1 1074 aaKnown RBP10.7□□□□□ -0.7
SCFD1-212ENST00000554486 TATDN2Q93075 761 aa10.69□□□□□ -0.7
SCFD1-212ENST00000554486 SEPT9Q9UHD8 586 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-212ENST00000554486 IRF6O14896 467 aa10.68□□□□□ -0.7
SCFD1-212ENST00000554486 MAP2K5Q13163 448 aa10.68□□□□□ -0.7
SCFD1-212ENST00000554486 THSD4Q6ZMP0 1018 aa10.68□□□□□ -0.7
SCFD1-212ENST00000554486 PNMA3Q9UL41 463 aa10.68□□□□□ -0.7
SCFD1-212ENST00000554486 MINK1Q8N4C8 1332 aaPredicted RBP10.67□□□□□ -0.7
SCFD1-212ENST00000554486 HDGFP51858 240 aaKnown RBP10.67□□□□□ -0.7
SCFD1-212ENST00000554486 PTPN5P54829 565 aa10.67□□□□□ -0.7
SCFD1-212ENST00000554486 PADI6Q6TGC4 694 aa10.67□□□□□ -0.7
SCFD1-212ENST00000554486 KRI1Q8N9T8 703 aaKnown RBP10.67□□□□□ -0.7
SCFD1-212ENST00000554486 TTC13Q8NBP0 860 aa10.67□□□□□ -0.7
SCFD1-212ENST00000554486 AK7Q96M32 723 aa10.67□□□□□ -0.7
SCFD1-212ENST00000554486 CCDC102AQ96A19 550 aa10.66□□□□□ -0.7
SCFD1-212ENST00000554486 FAM198AQ9UFP1 575 aa10.66□□□□□ -0.7
SCFD1-212ENST00000554486 CUX1P39880 1505 aa10.66□□□□□ -0.7
SCFD1-212ENST00000554486 URB2Q14146 1524 aaKnown RBP10.66□□□□□ -0.7
SCFD1-212ENST00000554486 MRC2Q9UBG0 1479 aa10.66□□□□□ -0.7
SCFD1-212ENST00000554486 WRNQ14191 1432 aaPredicted RBP eCLIP10.66□□□□□ -0.7
SCFD1-212ENST00000554486 THOC2Q8NI27 1593 aaKnown RBP10.65□□□□□ -0.7
SCFD1-212ENST00000554486 TRIM66O15016 1216 aa10.65□□□□□ -0.7
SCFD1-212ENST00000554486 BRPF1P55201 1214 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-212ENST00000554486 NUDT18Q6ZVK8 323 aa10.65□□□□□ -0.7
SCFD1-212ENST00000554486 SYNJ1O43426 1573 aa10.65□□□□□ -0.71
SCFD1-212ENST00000554486 TOPBP1Q92547 1522 aa10.63□□□□□ -0.71
SCFD1-212ENST00000554486 SOWAHBA6NEL2 793 aa10.63□□□□□ -0.71
SCFD1-212ENST00000554486 SMAPO00193 183 aa10.63□□□□□ -0.71
SCFD1-212ENST00000554486 LRCH3Q96II8 777 aa10.63□□□□□ -0.71
SCFD1-212ENST00000554486 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-212ENST00000554486 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
SCFD1-212ENST00000554486 TOP2BQ02880 1626 aa10.62□□□□□ -0.71
SCFD1-212ENST00000554486 BIVM-ERCC5R4GMW8 1640 aa10.62□□□□□ -0.71
SCFD1-212ENST00000554486 C3orf80F5H4A9 247 aa10.62□□□□□ -0.71
SCFD1-212ENST00000554486 FAM161AQ3B820 660 aa10.62□□□□□ -0.71
SCFD1-212ENST00000554486 WDR62O43379 1518 aa10.62□□□□□ -0.71
SCFD1-212ENST00000554486 PHOX2BQ99453 314 aa10.61□□□□□ -0.71
SCFD1-212ENST00000554486 BCAMP50895 628 aa10.59□□□□□ -0.71
SCFD1-212ENST00000554486 NYAP1Q6ZVC0 841 aa10.59□□□□□ -0.71
SCFD1-212ENST00000554486 RBM46Q8TBY0 533 aaKnown RBP10.59□□□□□ -0.71
SCFD1-212ENST00000554486 ADGRG1Q9Y653 693 aa10.59□□□□□ -0.71
SCFD1-212ENST00000554486 SLC4A3P48751 1232 aa10.58□□□□□ -0.72
SCFD1-212ENST00000554486 TSR3Q9UJK0 312 aaKnown RBP10.58□□□□□ -0.72
SCFD1-212ENST00000554486 PDE4DQ08499 809 aa10.57□□□□□ -0.72
SCFD1-212ENST00000554486 SAMD7Q7Z3H4 446 aa10.57□□□□□ -0.72
SCFD1-212ENST00000554486 FGD5Q6ZNL6 1462 aa10.56□□□□□ -0.72
SCFD1-212ENST00000554486 PPP4CP60510 307 aa10.56□□□□□ -0.72
SCFD1-212ENST00000554486 AMHR2Q16671 573 aa10.56□□□□□ -0.72
SCFD1-212ENST00000554486 EYA1Q99502 592 aa10.56□□□□□ -0.72
SCFD1-212ENST00000554486 GPBP1L1Q9HC44 474 aaPredicted RBP10.56□□□□□ -0.72
SCFD1-212ENST00000554486 POLA1P09884 1462 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-212ENST00000554486 OATP04181 439 aa10.55□□□□□ -0.72
SCFD1-212ENST00000554486 NECTIN2Q92692 538 aa10.55□□□□□ -0.72
SCFD1-212ENST00000554486 REPIN1Q9BWE0 567 aaKnown RBP10.55□□□□□ -0.72
SCFD1-212ENST00000554486 HPS5Q9UPZ3 1129 aa10.55□□□□□ -0.72
SCFD1-212ENST00000554486 NEUROD2Q15784 382 aa10.54□□□□□ -0.72
SCFD1-212ENST00000554486 METTL3Q86U44 580 aaKnown RBP10.54□□□□□ -0.72
SCFD1-212ENST00000554486 PXYLP1Q8TE99 480 aa10.54□□□□□ -0.72
SCFD1-212ENST00000554486 PLA2G2EQ9NZK7 142 aa10.54□□□□□ -0.72
SCFD1-212ENST00000554486 CUX2O14529 1486 aa10.54□□□□□ -0.72
SCFD1-212ENST00000554486 TMUB1Q9BVT8 246 aa10.53□□□□□ -0.72
SCFD1-212ENST00000554486 WBP1LQ9NX94 342 aa10.53□□□□□ -0.72
SCFD1-212ENST00000554486 DNAJB2P25686 324 aa10.52□□□□□ -0.73
SCFD1-212ENST00000554486 SLF2Q8IX21 1173 aa10.52□□□□□ -0.73
SCFD1-212ENST00000554486 PARP9Q8IXQ6 854 aa10.52□□□□□ -0.73
SCFD1-212ENST00000554486 NLRP7Q8WX94 980 aa10.52□□□□□ -0.73
SCFD1-212ENST00000554486 RAD54L2Q9Y4B4 1467 aa10.52□□□□□ -0.73
SCFD1-212ENST00000554486 SOGA1O94964 1423 aa10.51□□□□□ -0.73
SCFD1-212ENST00000554486 TARBP1Q13395 1621 aaKnown RBP10.51□□□□□ -0.73
SCFD1-212ENST00000554486 RNF40O75150 1001 aa10.5□□□□□ -0.73
SCFD1-212ENST00000554486 SWT1Q5T5J6 900 aaKnown RBP10.5□□□□□ -0.73
SCFD1-212ENST00000554486 KDM4CQ9H3R0 1056 aa10.49□□□□□ -0.73
SCFD1-212ENST00000554486 IFT140Q96RY7 1462 aa10.49□□□□□ -0.73
SCFD1-212ENST00000554486 WDR97A6NE52 1622 aa10.48□□□□□ -0.73
SCFD1-212ENST00000554486 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.48□□□□□ -0.73
SCFD1-212ENST00000554486 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
SCFD1-212ENST00000554486 RCCD1A6NED2 376 aa10.47□□□□□ -0.73
SCFD1-212ENST00000554486 TMEM134Q9H6X4 195 aa10.46□□□□□ -0.73
SCFD1-212ENST00000554486 MDM2Q00987 491 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-212ENST00000554486 RUSC2Q8N2Y8 1516 aa10.44□□□□□ -0.74
SCFD1-212ENST00000554486 ZNF608Q9ULD9 1512 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-212ENST00000554486 RSPH4AQ5TD94 716 aa10.44□□□□□ -0.74
SCFD1-212ENST00000554486 IFFO2Q5TF58 517 aa10.44□□□□□ -0.74
SCFD1-212ENST00000554486 GIGYF2Q6Y7W6 1299 aaKnown RBP10.44□□□□□ -0.74
SCFD1-212ENST00000554486 MS4A1P11836 297 aa10.43□□□□□ -0.74
SCFD1-212ENST00000554486 PRR14Q9BWN1 585 aa10.43□□□□□ -0.74
SCFD1-212ENST00000554486 FAM117AQ9C073 453 aa10.43□□□□□ -0.74
SCFD1-212ENST00000554486 TDRD9Q8NDG6 1382 aaKnown RBP10.42□□□□□ -0.74
SCFD1-212ENST00000554486 TTLL12Q14166 644 aaPredicted RBP10.42□□□□□ -0.74
SCFD1-212ENST00000554486 GPCPD1Q9NPB8 672 aa10.42□□□□□ -0.74
SCFD1-212ENST00000554486 ABCA5Q8WWZ7 1642 aa10.42□□□□□ -0.74
SCFD1-212ENST00000554486 ITGBL1O95965 494 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms