RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 SENP3Q9H4L4 574 aaPredicted RBP11.02□□□□□ -0.64
GTF2A1-203ENST00000553612 SMC4Q9NTJ3 1288 aa11.02□□□□□ -0.64
GTF2A1-203ENST00000553612 CPSF2Q9P2I0 782 aaKnown RBP11.02□□□□□ -0.64
GTF2A1-203ENST00000553612 CCAR2Q8N163 923 aaKnown RBP11.02□□□□□ -0.65
GTF2A1-203ENST00000553612 SLC26A8Q96RN1 970 aa11.02□□□□□ -0.65
GTF2A1-203ENST00000553612 U2SURPO15042 1029 aaKnown RBP11.02□□□□□ -0.65
GTF2A1-203ENST00000553612 RPAINQ86UA6 219 aa11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 CEP162Q5TB80 1403 aa11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 SRRTQ9BXP5 876 aaKnown RBP11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 RNF216Q9NWF9 866 aaPredicted RBP11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 APBB1O00213 710 aa11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 CCDC97Q96F63 343 aaPredicted RBP11.01□□□□□ -0.65
GTF2A1-203ENST00000553612 MNAT1P51948 309 aa11□□□□□ -0.65
GTF2A1-203ENST00000553612 STK26Q9P289 416 aa11□□□□□ -0.65
GTF2A1-203ENST00000553612 ZNF500O60304 480 aaPredicted RBP11□□□□□ -0.65
GTF2A1-203ENST00000553612 SKOR2Q2VWA4 1001 aaPredicted RBP11□□□□□ -0.65
GTF2A1-203ENST00000553612 GNL2Q13823 731 aaKnown RBP10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 CDCA8Q53HL2 280 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 LEKR1Q6ZMV7 388 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 CHMP5Q9NZZ3 219 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 CCDC91Q7Z6B0 441 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 MCM4P33991 863 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 NEBLO76041 1014 aa10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 RBM28Q9NW13 759 aaKnown RBP10.99□□□□□ -0.65
GTF2A1-203ENST00000553612 STK11IPQ8N1F8 1099 aa10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 CAVIN1Q6NZI2 390 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 IFT57Q9NWB7 429 aa10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 CCDC34Q96HJ3 373 aa10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 KCNA4P22459 653 aa10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 NOL10Q9BSC4 688 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 HSPA5P11021 654 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 POLD1P28340 1107 aa10.98□□□□□ -0.65
GTF2A1-203ENST00000553612 PRR29P0C7W0 189 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 TTC31Q49AM3 519 aaPredicted RBP10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 TRHP20396 242 aaPredicted RBP10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 AKNAQ7Z591 1439 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 NEFHP12036 1026 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 SART3Q15020 963 aaKnown RBP10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 MCTP1Q6DN14 999 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 ANKRD20A12PQ8NF67 263 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 CHMP3Q9Y3E7 222 aa10.97□□□□□ -0.65
GTF2A1-203ENST00000553612 MNS1Q8NEH6 495 aa10.96□□□□□ -0.65
GTF2A1-203ENST00000553612 CENPHQ9H3R5 247 aa10.96□□□□□ -0.65
GTF2A1-203ENST00000553612 E2F4Q16254 413 aa10.96□□□□□ -0.66
GTF2A1-203ENST00000553612 CLUAP1Q96AJ1 413 aa10.96□□□□□ -0.66
GTF2A1-203ENST00000553612 SEMA3FQ13275 785 aa10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 TMX4Q9H1E5 349 aaPredicted RBP10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 ZNF853P0CG23 659 aa10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 BIN2Q9UBW5 565 aaPredicted RBP10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 PES1O00541 588 aaKnown RBP10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 ZRSR1Q15695 479 aaKnown RBP10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 IRAK4Q9NWZ3 460 aa10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 CEP83Q9Y592 693 aa10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 RRP7BPQ9NSQ0 103 aa10.95□□□□□ -0.66
GTF2A1-203ENST00000553612 TPM3P06753 285 aa10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 DNAAF4Q8WXU2 420 aa10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 GORABQ5T7V8 394 aa10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 CCDC191Q8NCU4 936 aa10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 TMCO5BA8MYB1 307 aa10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 RRP1P56182 461 aaKnown RBP10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 RTF1Q92541 710 aaKnown RBP10.94□□□□□ -0.66
GTF2A1-203ENST00000553612 RIPK4P57078 832 aa10.93□□□□□ -0.66
GTF2A1-203ENST00000553612 CCDC172P0C7W6 258 aa10.93□□□□□ -0.66
GTF2A1-203ENST00000553612 SPC24Q8NBT2 197 aa10.93□□□□□ -0.66
GTF2A1-203ENST00000553612 SUDS3Q9H7L9 328 aaPredicted RBP10.93□□□□□ -0.66
GTF2A1-203ENST00000553612 CTR9Q6PD62 1173 aa10.92□□□□□ -0.66
GTF2A1-203ENST00000553612 AK7Q96M32 723 aa10.92□□□□□ -0.66
GTF2A1-203ENST00000553612 MAP2K2P36507 400 aa10.92□□□□□ -0.66
GTF2A1-203ENST00000553612 FBXW7Q969H0 707 aa10.92□□□□□ -0.66
GTF2A1-203ENST00000553612 SLC24A3Q9HC58 644 aa10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 MFSD4BQ5TF39 518 aa10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 NOC3LQ8WTT2 800 aaKnown RBP10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 TERF2IPQ9NYB0 399 aa10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 KRBA2Q6ZNG9 492 aa10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 LIG1P18858 919 aa10.91□□□□□ -0.66
GTF2A1-203ENST00000553612 TPD52L1Q16890 204 aaPredicted RBP10.9□□□□□ -0.66
GTF2A1-203ENST00000553612 ZSCAN20P17040 1043 aaPredicted RBP10.9□□□□□ -0.66
GTF2A1-203ENST00000553612 KRT222Q8N1A0 295 aa10.9□□□□□ -0.66
GTF2A1-203ENST00000553612 JARID2Q92833 1246 aaPredicted RBP10.9□□□□□ -0.66
GTF2A1-203ENST00000553612 GOLGA6L4A6NEF3 574 aa10.9□□□□□ -0.66
GTF2A1-203ENST00000553612 PDE6BP35913 854 aa10.9□□□□□ -0.67
GTF2A1-203ENST00000553612 CCDC184Q52MB2 194 aa10.9□□□□□ -0.67
GTF2A1-203ENST00000553612 CASC1Q6TDU7 716 aa10.89□□□□□ -0.67
GTF2A1-203ENST00000553612 OGFRQ9NZT2 677 aa10.89□□□□□ -0.67
GTF2A1-203ENST00000553612 ERBB4Q15303 1308 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 CCDC112Q8NEF3 446 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 A0A1B0GUL7 405 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 SLC52A1Q9NWF4 448 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 USP8P40818 1118 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 SUFUQ9UMX1 484 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 LMAN1P49257 510 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 SATB1Q01826 763 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 ATP2B3Q16720 1220 aa10.88□□□□□ -0.67
GTF2A1-203ENST00000553612 EFCC1Q9HA90 598 aa10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 ZNF777Q9ULD5 760 aaPredicted RBP10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 TPM4P67936 248 aa10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 NF2P35240 595 aa10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 AP1ARQ63HQ0 302 aa10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 DYDC1Q8WWB3 177 aa10.87□□□□□ -0.67
GTF2A1-203ENST00000553612 SYAP1Q96A49 352 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms