RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CROCC2H7BZ55 1655 aa17.7■□□□□ 0.42
PTPN1-202ENST00000541713 KDM5DQ9BY66 1539 aa17.69■□□□□ 0.42
PTPN1-202ENST00000541713 PLPPR3Q6T4P5 718 aa17.69■□□□□ 0.42
PTPN1-202ENST00000541713 CDC42BPBQ9Y5S2 1711 aa17.69■□□□□ 0.42
PTPN1-202ENST00000541713 MAGI2Q86UL8 1455 aa17.69■□□□□ 0.42
PTPN1-202ENST00000541713 TNNQ9UQP3 1299 aa17.68■□□□□ 0.42
PTPN1-202ENST00000541713 BACH2Q9BYV9 841 aa17.68■□□□□ 0.42
PTPN1-202ENST00000541713 CDCA8Q53HL2 280 aa17.67■□□□□ 0.42
PTPN1-202ENST00000541713 CFAP65Q6ZU64 1925 aaKnown RBP17.67■□□□□ 0.42
PTPN1-202ENST00000541713 U2SURPO15042 1029 aaKnown RBP17.67■□□□□ 0.42
PTPN1-202ENST00000541713 ARXQ96QS3 562 aa17.66■□□□□ 0.42
PTPN1-202ENST00000541713 KANK1Q14678 1352 aa17.66■□□□□ 0.42
PTPN1-202ENST00000541713 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
PTPN1-202ENST00000541713 UGGT1Q9NYU2 1555 aa17.66■□□□□ 0.42
PTPN1-202ENST00000541713 FBLN1P23142 703 aa17.65■□□□□ 0.42
PTPN1-202ENST00000541713 ADCY10Q96PN6 1610 aa17.65■□□□□ 0.42
PTPN1-202ENST00000541713 WASHC2CQ9Y4E1 1318 aa17.65■□□□□ 0.42
PTPN1-202ENST00000541713 COL17A1Q9UMD9 1497 aaPredicted RBP17.65■□□□□ 0.42
PTPN1-202ENST00000541713 PLCH2O75038 1416 aa17.64■□□□□ 0.41
PTPN1-202ENST00000541713 MLECQ14165 292 aa17.64■□□□□ 0.41
PTPN1-202ENST00000541713 SPRYD3Q8NCJ5 442 aa17.63■□□□□ 0.41
PTPN1-202ENST00000541713 U2AF1L5P0DN76 240 aaPredicted RBP17.63■□□□□ 0.41
PTPN1-202ENST00000541713 U2AF1Q01081 240 aaKnown RBP eCLIP17.63■□□□□ 0.41
PTPN1-202ENST00000541713 MTHFSP49914 203 aa17.62■□□□□ 0.41
PTPN1-202ENST00000541713 SRPK2P78362 688 aaKnown RBP17.62■□□□□ 0.41
PTPN1-202ENST00000541713 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.61■□□□□ 0.41
PTPN1-202ENST00000541713 CHD1O14646 1710 aa17.61■□□□□ 0.41
PTPN1-202ENST00000541713 SLFN5Q08AF3 891 aa17.6■□□□□ 0.41
PTPN1-202ENST00000541713 GGNBP2Q9H3C7 697 aa17.6■□□□□ 0.41
PTPN1-202ENST00000541713 IGHDP01880 384 aa17.59■□□□□ 0.41
PTPN1-202ENST00000541713 GPRASP1Q5JY77 1395 aa17.58■□□□□ 0.41
PTPN1-202ENST00000541713 MINK1Q8N4C8 1332 aaPredicted RBP17.58■□□□□ 0.41
PTPN1-202ENST00000541713 CENPJQ9HC77 1338 aaPredicted RBP17.58■□□□□ 0.4
PTPN1-202ENST00000541713 STAG3Q9UJ98 1225 aa17.58■□□□□ 0.4
PTPN1-202ENST00000541713 TCP11L2Q8N4U5 519 aa17.57■□□□□ 0.4
PTPN1-202ENST00000541713 ARHGEF5Q12774 1597 aa17.57■□□□□ 0.4
PTPN1-202ENST00000541713 PREX2Q70Z35 1606 aa17.57■□□□□ 0.4
PTPN1-202ENST00000541713 TSR2Q969E8 191 aaKnown RBP17.57■□□□□ 0.4
PTPN1-202ENST00000541713 TRPM1Q7Z4N2 1603 aa17.56■□□□□ 0.4
PTPN1-202ENST00000541713 ABCC2Q92887 1545 aa17.55■□□□□ 0.4
PTPN1-202ENST00000541713 POLR1AO95602 1720 aaPredicted RBP17.55■□□□□ 0.4
PTPN1-202ENST00000541713 WDR7Q9Y4E6 1490 aa17.55■□□□□ 0.4
PTPN1-202ENST00000541713 DUOX2Q9NRD8 1548 aa17.55■□□□□ 0.4
PTPN1-202ENST00000541713 FANCAO15360 1455 aa17.55■□□□□ 0.4
PTPN1-202ENST00000541713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.54■□□□□ 0.41e-6■■■□□ 14.8
PTPN1-202ENST00000541713 SLKQ9H2G2 1235 aaPredicted RBP17.54■□□□□ 0.4
PTPN1-202ENST00000541713 WWC1Q8IX03 1113 aa17.53■□□□□ 0.4
PTPN1-202ENST00000541713 NOS1P29475 1434 aa17.53■□□□□ 0.4
PTPN1-202ENST00000541713 IL27Q8NEV9 243 aa17.53■□□□□ 0.4
PTPN1-202ENST00000541713 ATP10AO60312 1499 aa17.52■□□□□ 0.4
PTPN1-202ENST00000541713 POGKQ9P215 609 aa17.52■□□□□ 0.4
PTPN1-202ENST00000541713 SCAF11Q99590 1463 aaKnown RBP17.52■□□□□ 0.39
PTPN1-202ENST00000541713 EIF3AQ14152 1382 aaKnown RBP17.51■□□□□ 0.39
PTPN1-202ENST00000541713 ADGRL1O94910 1474 aa17.51■□□□□ 0.39
PTPN1-202ENST00000541713 NUTM2FA1L443 756 aa17.51■□□□□ 0.39
PTPN1-202ENST00000541713 ELL2O00472 640 aaPredicted RBP17.51■□□□□ 0.39
PTPN1-202ENST00000541713 CENPQQ7L2Z9 268 aaPredicted RBP17.51■□□□□ 0.39
PTPN1-202ENST00000541713 NSD3Q9BZ95 1437 aa17.51■□□□□ 0.39
PTPN1-202ENST00000541713 SOX12O15370 315 aa17.51■□□□□ 0.39
PTPN1-202ENST00000541713 SEC24BO95487 1268 aa17.5■□□□□ 0.39
PTPN1-202ENST00000541713 E9PSI1 815 aa17.49■□□□□ 0.39
PTPN1-202ENST00000541713 RLBP1P12271 317 aa17.49■□□□□ 0.39
PTPN1-202ENST00000541713 CYB5RLQ6IPT4 315 aa17.49■□□□□ 0.39
PTPN1-202ENST00000541713 FBXO31Q5XUX0 539 aaPredicted RBP17.49■□□□□ 0.39
PTPN1-202ENST00000541713 PRDM15P57071 1507 aaPredicted RBP17.48■□□□□ 0.39
PTPN1-202ENST00000541713 MS4A1P11836 297 aa17.48■□□□□ 0.39
PTPN1-202ENST00000541713 FAM161AQ3B820 660 aa17.48■□□□□ 0.39
PTPN1-202ENST00000541713 BLMP54132 1417 aaPredicted RBP17.47■□□□□ 0.39
PTPN1-202ENST00000541713 MAST1Q9Y2H9 1570 aa17.47■□□□□ 0.39
PTPN1-202ENST00000541713 MYO5CQ9NQX4 1742 aa17.46■□□□□ 0.39
PTPN1-202ENST00000541713 FTSJ3Q8IY81 847 aaKnown RBP17.45■□□□□ 0.38
PTPN1-202ENST00000541713 CFAP53Q96M91 514 aa17.45■□□□□ 0.38
PTPN1-202ENST00000541713 PLEKHG5O94827 1062 aa17.45■□□□□ 0.38
PTPN1-202ENST00000541713 IDI1Q13907 227 aa17.45■□□□□ 0.38
PTPN1-202ENST00000541713 C8orf34Q49A92 452 aa17.45■□□□□ 0.38
PTPN1-202ENST00000541713 FRAT2O75474 233 aaPredicted RBP17.43■□□□□ 0.38
PTPN1-202ENST00000541713 NFKBIBQ15653 356 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 THUMPD2Q9BTF0 503 aaKnown RBP17.43■□□□□ 0.38
PTPN1-202ENST00000541713 ZCCHC11Q5TAX3 1644 aaKnown RBP17.43■□□□□ 0.38
PTPN1-202ENST00000541713 ASXL2Q76L83 1435 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 HMOX1P09601 288 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 PCDHB15Q9Y5E8 787 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 KDM2BQ8NHM5 1336 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 ZNF521Q96K83 1311 aa17.43■□□□□ 0.38
PTPN1-202ENST00000541713 ASXL1Q8IXJ9 1541 aa17.42■□□□□ 0.38
PTPN1-202ENST00000541713 RUNDC1Q96C34 613 aa17.42■□□□□ 0.38
PTPN1-202ENST00000541713 PRAM1Q96QH2 718 aa17.42■□□□□ 0.38
PTPN1-202ENST00000541713 SMC4Q9NTJ3 1288 aa17.42■□□□□ 0.38
PTPN1-202ENST00000541713 ITPRIPQ8IWB1 547 aa17.41■□□□□ 0.38
PTPN1-202ENST00000541713 ZMYM4Q5VZL5 1548 aa17.41■□□□□ 0.38
PTPN1-202ENST00000541713 DDRGK1Q96HY6 314 aa17.41■□□□□ 0.38
PTPN1-202ENST00000541713 EXOSC9Q06265 439 aaKnown RBP17.4■□□□□ 0.38
PTPN1-202ENST00000541713 CGNL1Q0VF96 1302 aa17.4■□□□□ 0.38
PTPN1-202ENST00000541713 WAPLQ7Z5K2 1190 aa17.4■□□□□ 0.38
PTPN1-202ENST00000541713 CLTCL1P53675 1640 aa17.4■□□□□ 0.38
PTPN1-202ENST00000541713 ABCC1P33527 1531 aa17.4■□□□□ 0.38
PTPN1-202ENST00000541713 RARSP54136 660 aaKnown RBP17.4■□□□□ 0.38
PTPN1-202ENST00000541713 IQGAP3Q86VI3 1631 aa17.39■□□□□ 0.38
PTPN1-202ENST00000541713 UNC13BO14795 1591 aa17.39■□□□□ 0.37
PTPN1-202ENST00000541713 OSCARQ8IYS5 282 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms