RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 NISCHQ9Y2I1 1504 aa26.98■■□□□ 1.91
PTPN1-202ENST00000541713 SHROOM4Q9ULL8 1493 aa24.35■■□□□ 1.49
PTPN1-202ENST00000541713 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
PTPN1-202ENST00000541713 SUPT5HO00267 1087 aaKnown RBP23.96■■□□□ 1.43
PTPN1-202ENST00000541713 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
PTPN1-202ENST00000541713 ZCCHC6Q5VYS8 1495 aaKnown RBP22.69■■□□□ 1.22
PTPN1-202ENST00000541713 EHMT2Q96KQ7 1210 aa22.65■■□□□ 1.22
PTPN1-202ENST00000541713 PCGF6Q9BYE7 350 aa22.57■■□□□ 1.2
PTPN1-202ENST00000541713 LOC105371045A0A1W2PR82 267 aa22.54■■□□□ 1.2
PTPN1-202ENST00000541713 MYO15BQ96JP2 1530 aa22.52■■□□□ 1.2
PTPN1-202ENST00000541713 FAM9AQ8IZU1 332 aaPredicted RBP22.36■■□□□ 1.17
PTPN1-202ENST00000541713 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
PTPN1-202ENST00000541713 PPARGC1BQ86YN6 1023 aaKnown RBP22.25■■□□□ 1.15
PTPN1-202ENST00000541713 HRCP23327 699 aa22.07■■□□□ 1.12
PTPN1-202ENST00000541713 TRIM41Q8WV44 630 aa21.96■■□□□ 1.11
PTPN1-202ENST00000541713 ABCC9O60706 1549 aa21.91■■□□□ 1.1
PTPN1-202ENST00000541713 SCRIBQ14160 1630 aa21.86■■□□□ 1.09
PTPN1-202ENST00000541713 TTBK1Q5TCY1 1321 aaPredicted RBP21.81■■□□□ 1.08
PTPN1-202ENST00000541713 RSF1Q96T23 1441 aaPredicted RBP21.62■■□□□ 1.05
PTPN1-202ENST00000541713 TRIM26Q12899 539 aaPredicted RBP21.59■■□□□ 1.05
PTPN1-202ENST00000541713 DCAF1Q9Y4B6 1507 aa21.54■■□□□ 1.04
PTPN1-202ENST00000541713 CECR2Q9BXF3 1484 aa21.49■■□□□ 1.03
PTPN1-202ENST00000541713 RB1CC1Q8TDY2 1594 aa21.4■■□□□ 1.02
PTPN1-202ENST00000541713 PABPN1Q86U42 306 aaKnown RBP eCLIP21.39■■□□□ 1.01
PTPN1-202ENST00000541713 RANGAP1P46060 587 aaPredicted RBP21.3■■□□□ 1
PTPN1-202ENST00000541713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.25■□□□□ 0.99
PTPN1-202ENST00000541713 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
PTPN1-202ENST00000541713 UBTFP17480 764 aaKnown RBP21.11■□□□□ 0.97
PTPN1-202ENST00000541713 CCER1Q8TC90 406 aaPredicted RBP21.1■□□□□ 0.97
PTPN1-202ENST00000541713 WIZO95785 1651 aa21.09■□□□□ 0.97
PTPN1-202ENST00000541713 NACADO15069 1562 aa20.91■□□□□ 0.94
PTPN1-202ENST00000541713 ZEB1P37275 1124 aaPredicted RBP20.91■□□□□ 0.94
PTPN1-202ENST00000541713 ABCC8Q09428 1581 aa20.9■□□□□ 0.94
PTPN1-202ENST00000541713 HNRNPUL2Q1KMD3 747 aaKnown RBP20.81■□□□□ 0.92
PTPN1-202ENST00000541713 CCDC88BA6NC98 1476 aa20.81■□□□□ 0.92
PTPN1-202ENST00000541713 SOGA1O94964 1423 aa20.8■□□□□ 0.92
PTPN1-202ENST00000541713 CSRNP3Q8WYN3 585 aa20.72■□□□□ 0.91
PTPN1-202ENST00000541713 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
PTPN1-202ENST00000541713 BAZ1AQ9NRL2 1556 aaPredicted RBP20.65■□□□□ 0.9
PTPN1-202ENST00000541713 YTHDC1Q96MU7 727 aaKnown RBP20.64■□□□□ 0.89
PTPN1-202ENST00000541713 SCAF1Q9H7N4 1312 aaKnown RBP20.59■□□□□ 0.89
PTPN1-202ENST00000541713 CEP162Q5TB80 1403 aa20.58■□□□□ 0.89
PTPN1-202ENST00000541713 APLP2Q06481 763 aa20.55■□□□□ 0.88
PTPN1-202ENST00000541713 DIEXFQ68CQ4 756 aaKnown RBP20.54■□□□□ 0.88
PTPN1-202ENST00000541713 ITGAEP38570 1179 aa20.47■□□□□ 0.87
PTPN1-202ENST00000541713 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
PTPN1-202ENST00000541713 TOP2AP11388 1531 aaKnown RBP20.44■□□□□ 0.86
PTPN1-202ENST00000541713 NEUROD1Q13562 356 aa20.43■□□□□ 0.86
PTPN1-202ENST00000541713 SMARCA2P51531 1590 aa20.43■□□□□ 0.86
PTPN1-202ENST00000541713 WRNQ14191 1432 aaPredicted RBP eCLIP20.39■□□□□ 0.85
PTPN1-202ENST00000541713 ATP1B4Q9UN42 357 aaPredicted RBP20.33■□□□□ 0.85
PTPN1-202ENST00000541713 TNIKQ9UKE5 1360 aa20.33■□□□□ 0.85
PTPN1-202ENST00000541713 GTF3C3Q9Y5Q9 886 aa20.3■□□□□ 0.84
PTPN1-202ENST00000541713 UNC13AQ9UPW8 1703 aa20.26■□□□□ 0.83
PTPN1-202ENST00000541713 CLIP1P30622 1438 aa20.24■□□□□ 0.83
PTPN1-202ENST00000541713 ACIN1Q9UKV3 1341 aaKnown RBP20.24■□□□□ 0.83
PTPN1-202ENST00000541713 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
PTPN1-202ENST00000541713 GOLGA3Q08378 1498 aa20.22■□□□□ 0.83
PTPN1-202ENST00000541713 BAZ1BQ9UIG0 1483 aaKnown RBP20.2■□□□□ 0.82
PTPN1-202ENST00000541713 ZNF316A6NFI3 1004 aaPredicted RBP20.2■□□□□ 0.82
PTPN1-202ENST00000541713 P3H3Q8IVL6 736 aa20.19■□□□□ 0.82
PTPN1-202ENST00000541713 BICRAQ9NZM4 1560 aa20.16■□□□□ 0.82
PTPN1-202ENST00000541713 RAPGEF2Q9Y4G8 1499 aa20.16■□□□□ 0.82
PTPN1-202ENST00000541713 CENPBP07199 599 aaPredicted RBP20.16■□□□□ 0.82
PTPN1-202ENST00000541713 MIER1Q8N108 512 aa20.16■□□□□ 0.82
PTPN1-202ENST00000541713 KANK4Q5T7N3 995 aaPredicted RBP20.14■□□□□ 0.81
PTPN1-202ENST00000541713 ATAD2BQ9ULI0 1458 aa20.13■□□□□ 0.81
PTPN1-202ENST00000541713 SYNJ1O43426 1573 aa20.13■□□□□ 0.81
PTPN1-202ENST00000541713 EEA1Q15075 1411 aa20.05■□□□□ 0.8
PTPN1-202ENST00000541713 CEP164Q9UPV0 1460 aa20.04■□□□□ 0.8
PTPN1-202ENST00000541713 FAM50AQ14320 339 aaKnown RBP19.94■□□□□ 0.78
PTPN1-202ENST00000541713 VPS8Q8N3P4 1428 aa19.93■□□□□ 0.78
PTPN1-202ENST00000541713 HIRIP3Q9BW71 556 aaPredicted RBP19.89■□□□□ 0.78
PTPN1-202ENST00000541713 ARID3CA6NKF2 412 aa19.82■□□□□ 0.76
PTPN1-202ENST00000541713 KIF21BO75037 1637 aa19.8■□□□□ 0.76
PTPN1-202ENST00000541713 SIN3AQ96ST3 1273 aa19.75■□□□□ 0.75
PTPN1-202ENST00000541713 ARAP1Q96P48 1450 aa19.72■□□□□ 0.75
PTPN1-202ENST00000541713 KIF27Q86VH2 1401 aa19.72■□□□□ 0.75
PTPN1-202ENST00000541713 KCNH8Q96L42 1107 aa19.71■□□□□ 0.75
PTPN1-202ENST00000541713 CUX2O14529 1486 aa19.7■□□□□ 0.74
PTPN1-202ENST00000541713 CUX1P39880 1505 aa19.67■□□□□ 0.74
PTPN1-202ENST00000541713 DHX57Q6P158 1386 aaKnown RBP19.66■□□□□ 0.74
PTPN1-202ENST00000541713 PEG3Q9GZU2 1588 aa19.65■□□□□ 0.74
PTPN1-202ENST00000541713 BCANQ96GW7 911 aa19.64■□□□□ 0.73
PTPN1-202ENST00000541713 PELP1Q8IZL8 1130 aaKnown RBP19.63■□□□□ 0.73
PTPN1-202ENST00000541713 DDX10Q13206 875 aaKnown RBP19.63■□□□□ 0.73
PTPN1-202ENST00000541713 DNAJC5BQ9UF47 199 aa19.63■□□□□ 0.73
PTPN1-202ENST00000541713 TOP2BQ02880 1626 aa19.61■□□□□ 0.73
PTPN1-202ENST00000541713 CCNB3Q8WWL7 1395 aa19.59■□□□□ 0.73
PTPN1-202ENST00000541713 PRXQ9BXM0 1461 aa19.59■□□□□ 0.73
PTPN1-202ENST00000541713 CARMIL1Q5VZK9 1371 aa19.59■□□□□ 0.73
PTPN1-202ENST00000541713 CNGB1Q14028 1251 aaPredicted RBP19.57■□□□□ 0.72
PTPN1-202ENST00000541713 IGF1RP08069 1367 aa19.57■□□□□ 0.72
PTPN1-202ENST00000541713 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
PTPN1-202ENST00000541713 ARHGAP35Q9NRY4 1499 aa19.53■□□□□ 0.72
PTPN1-202ENST00000541713 CHIC2Q9UKJ5 165 aa19.53■□□□□ 0.72
PTPN1-202ENST00000541713 RAB3GAP2Q9H2M9 1393 aa19.53■□□□□ 0.72
PTPN1-202ENST00000541713 RAD54L2Q9Y4B4 1467 aa19.5■□□□□ 0.71
PTPN1-202ENST00000541713 FHOD3Q2V2M9 1422 aa19.48■□□□□ 0.71
PTPN1-202ENST00000541713 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms