RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ABCA6Q8N139 1617 aa12.49□□□□□ -0.41
CTNNA1-243ENST00000540387 ZMYM4Q5VZL5 1548 aa12.49□□□□□ -0.41
CTNNA1-243ENST00000540387 DIP2CQ9Y2E4 1556 aa12.49□□□□□ -0.41
CTNNA1-243ENST00000540387 SMG6Q86US8 1419 aaKnown RBP12.48□□□□□ -0.41
CTNNA1-243ENST00000540387 ATP10AO60312 1499 aa12.47□□□□□ -0.41
CTNNA1-243ENST00000540387 PNNQ9H307 717 aaKnown RBP12.46□□□□□ -0.41
CTNNA1-243ENST00000540387 FAM135AQ9P2D6 1515 aa12.46□□□□□ -0.42
CTNNA1-243ENST00000540387 FRAT2O75474 233 aaPredicted RBP12.45□□□□□ -0.42
CTNNA1-243ENST00000540387 KDM5DQ9BY66 1539 aa12.45□□□□□ -0.42
CTNNA1-243ENST00000540387 ANKRD30BQ9BXX2 1392 aa12.45□□□□□ -0.42
CTNNA1-243ENST00000540387 MS4A1P11836 297 aa12.45□□□□□ -0.42
CTNNA1-243ENST00000540387 SLC4A3P48751 1232 aa12.45□□□□□ -0.42
CTNNA1-243ENST00000540387 UNC13BO14795 1591 aa12.44□□□□□ -0.42
CTNNA1-243ENST00000540387 KANK1Q14678 1352 aa12.44□□□□□ -0.42
CTNNA1-243ENST00000540387 MRS2Q9HD23 443 aa12.44□□□□□ -0.42
CTNNA1-243ENST00000540387 MLECQ14165 292 aa12.44□□□□□ -0.42
CTNNA1-243ENST00000540387 NUDCQ9Y266 331 aa12.44□□□□□ -0.42
CTNNA1-243ENST00000540387 PIAS4Q8N2W9 510 aaPredicted RBP12.43□□□□□ -0.42
CTNNA1-243ENST00000540387 PRDM4Q9UKN5 801 aa12.43□□□□□ -0.42
CTNNA1-243ENST00000540387 EIF2AK4Q9P2K8 1649 aaKnown RBP12.42□□□□□ -0.42
CTNNA1-243ENST00000540387 KLHL34Q8N239 644 aa12.42□□□□□ -0.42
CTNNA1-243ENST00000540387 ARID4BQ4LE39 1312 aaPredicted RBP12.41□□□□□ -0.42
CTNNA1-243ENST00000540387 MROH1Q8NDA8 1641 aa12.41□□□□□ -0.42
CTNNA1-243ENST00000540387 CLCN1P35523 988 aa12.41□□□□□ -0.42
CTNNA1-243ENST00000540387 DEPDC5O75140 1603 aa12.4□□□□□ -0.42
CTNNA1-243ENST00000540387 IQGAP3Q86VI3 1631 aa12.4□□□□□ -0.42
CTNNA1-243ENST00000540387 CALD1Q05682 793 aaKnown RBP12.4□□□□□ -0.42
CTNNA1-243ENST00000540387 PRDM15P57071 1507 aaPredicted RBP12.39□□□□□ -0.43
CTNNA1-243ENST00000540387 ARHGEF40Q8TER5 1519 aa12.39□□□□□ -0.43
CTNNA1-243ENST00000540387 PRKRIP1Q9H875 184 aaPredicted RBP12.39□□□□□ -0.43
CTNNA1-243ENST00000540387 VWDEQ8N2E2 1590 aa12.39□□□□□ -0.43
CTNNA1-243ENST00000540387 TONSLQ96HA7 1378 aa12.38□□□□□ -0.43
CTNNA1-243ENST00000540387 RNF17Q9BXT8 1623 aaKnown RBP12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 PLA2R1Q13018 1463 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 CNTLNQ9NXG0 1405 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 REREQ9P2R6 1566 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 CENPJQ9HC77 1338 aaPredicted RBP12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 AGLP35573 1532 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 SIGLEC1Q9BZZ2 1709 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 RGS3P49796 1198 aa12.37□□□□□ -0.43
CTNNA1-243ENST00000540387 PDIA4P13667 645 aaKnown RBP12.36□□□□□ -0.43
CTNNA1-243ENST00000540387 L1TD1Q5T7N2 865 aaKnown RBP12.36□□□□□ -0.43
CTNNA1-243ENST00000540387 BCL11BQ9C0K0 894 aaPredicted RBP12.36□□□□□ -0.43
CTNNA1-243ENST00000540387 POGKQ9P215 609 aa12.36□□□□□ -0.43
CTNNA1-243ENST00000540387 BCORL1Q5H9F3 1711 aa12.36□□□□□ -0.43
CTNNA1-243ENST00000540387 L3MBTL2Q969R5 705 aa12.35□□□□□ -0.43
CTNNA1-243ENST00000540387 PDCL3Q9H2J4 239 aa12.35□□□□□ -0.43
CTNNA1-243ENST00000540387 RPRD2Q5VT52 1461 aaKnown RBP12.34□□□□□ -0.43
CTNNA1-243ENST00000540387 ABCC3O15438 1527 aa12.34□□□□□ -0.43
CTNNA1-243ENST00000540387 LMTK2Q8IWU2 1503 aa12.34□□□□□ -0.43
CTNNA1-243ENST00000540387 EXOC6Q8TAG9 804 aa12.34□□□□□ -0.43
CTNNA1-243ENST00000540387 NPATQ14207 1427 aa12.34□□□□□ -0.43
CTNNA1-243ENST00000540387 CCDC144AA2RUR9 1427 aa12.33□□□□□ -0.44
CTNNA1-243ENST00000540387 ESF1Q9H501 851 aaKnown RBP12.33□□□□□ -0.44
CTNNA1-243ENST00000540387 E9PCH4 1651 aa12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 TET3O43151 1660 aa12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 PTPRTO14522 1441 aa12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 CEP152O94986 1710 aa12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 RGL3Q3MIN7 710 aa12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 FBXO31Q5XUX0 539 aaPredicted RBP12.32□□□□□ -0.44
CTNNA1-243ENST00000540387 EFCAB6Q5THR3 1501 aa12.31□□□□□ -0.44
CTNNA1-243ENST00000540387 HSPA5P11021 654 aaKnown RBP12.31□□□□□ -0.44
CTNNA1-243ENST00000540387 ARXQ96QS3 562 aa12.29□□□□□ -0.44
CTNNA1-243ENST00000540387 ARHGAP31Q2M1Z3 1444 aa12.29□□□□□ -0.44
CTNNA1-243ENST00000540387 RRP1P56182 461 aaKnown RBP12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 SKAP1Q86WV1 359 aa12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 ZMYM3Q14202 1370 aa12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 XRCC6P12956 609 aaKnown RBP eCLIP12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 KDM2AQ9Y2K7 1162 aa12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 CFAP65Q6ZU64 1925 aaKnown RBP12.28□□□□□ -0.44
CTNNA1-243ENST00000540387 TPM2P07951 284 aa12.27□□□□□ -0.44
CTNNA1-243ENST00000540387 CAMSAP1Q5T5Y3 1602 aa12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 UGGT1Q9NYU2 1555 aa12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 TRPM2O94759 1503 aa12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 NOS1P29475 1434 aa12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 CHGAP10645 457 aaKnown RBP12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 CEBPAP49715 358 aaPredicted RBP12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 IDI1Q13907 227 aa12.26□□□□□ -0.45
CTNNA1-243ENST00000540387 SENP3-EIF4A1A0A087X0R7 540 aa12.25□□□□□ -0.45
CTNNA1-243ENST00000540387 NBPF8Q3BBV2 869 aa12.25□□□□□ -0.45
CTNNA1-243ENST00000540387 ZNF326Q5BKZ1 582 aaKnown RBP12.25□□□□□ -0.45
CTNNA1-243ENST00000540387 ZC3H13Q5T200 1668 aaKnown RBP12.24□□□□□ -0.45
CTNNA1-243ENST00000540387 PANK2Q9BZ23 570 aa12.24□□□□□ -0.45
CTNNA1-243ENST00000540387 CLTCQ00610 1675 aaKnown RBP12.24□□□□□ -0.45
CTNNA1-243ENST00000540387 SPHKAPQ2M3C7 1700 aa12.24□□□□□ -0.45
CTNNA1-243ENST00000540387 SPATA31E1Q6ZUB1 1445 aa12.23□□□□□ -0.45
CTNNA1-243ENST00000540387 SLC52A1Q9NWF4 448 aa12.23□□□□□ -0.45
CTNNA1-243ENST00000540387 CCDC7Q96M83 1385 aa12.23□□□□□ -0.45
CTNNA1-243ENST00000540387 CLTCL1P53675 1640 aa12.23□□□□□ -0.45
CTNNA1-243ENST00000540387 GOLGA6L3A6NEY3 463 aa12.22□□□□□ -0.45
CTNNA1-243ENST00000540387 EIF4G2P78344 907 aaKnown RBP eCLIP12.22□□□□□ -0.45
CTNNA1-243ENST00000540387 FSD2A1L4K1 749 aa12.22□□□□□ -0.45
CTNNA1-243ENST00000540387 ERVK-7P63135 1459 aa12.21□□□□□ -0.45
CTNNA1-243ENST00000540387 ESPNB1AK53 854 aa12.21□□□□□ -0.45
CTNNA1-243ENST00000540387 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.45
CTNNA1-243ENST00000540387 SYNMO15061 1565 aa12.2□□□□□ -0.46
CTNNA1-243ENST00000540387 ERBB4Q15303 1308 aa12.2□□□□□ -0.46
CTNNA1-243ENST00000540387 FAM161AQ3B820 660 aa12.18□□□□□ -0.46
CTNNA1-243ENST00000540387 C8orf34Q49A92 452 aa12.18□□□□□ -0.46
CTNNA1-243ENST00000540387 RCAN3Q9UKA8 241 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms