RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 CLTCQ00610 1675 aaKnown RBP23.67■■□□□ 1.38
PCDHB17P-201ENST00000539533 PREX1Q8TCU6 1659 aa23.67■■□□□ 1.38
PCDHB17P-201ENST00000539533 IFT172Q9UG01 1749 aa23.66■■□□□ 1.38
PCDHB17P-201ENST00000539533 LAMC1P11047 1609 aa23.66■■□□□ 1.38
PCDHB17P-201ENST00000539533 ARID4BQ4LE39 1312 aaPredicted RBP23.65■■□□□ 1.38
PCDHB17P-201ENST00000539533 MYOM2P54296 1465 aa23.65■■□□□ 1.38
PCDHB17P-201ENST00000539533 POLR3GLQ9BT43 218 aa23.64■■□□□ 1.38
PCDHB17P-201ENST00000539533 SLC52A1Q9NWF4 448 aa23.64■■□□□ 1.38
PCDHB17P-201ENST00000539533 ANP32CO43423 234 aa23.63■■□□□ 1.37
PCDHB17P-201ENST00000539533 CFAP70Q5T0N1 1121 aa23.62■■□□□ 1.37
PCDHB17P-201ENST00000539533 ERVK-7P63135 1459 aa23.61■■□□□ 1.37
PCDHB17P-201ENST00000539533 PPLO60437 1756 aa23.6■■□□□ 1.37
PCDHB17P-201ENST00000539533 RPGRIP1LQ68CZ1 1315 aa23.59■■□□□ 1.37
PCDHB17P-201ENST00000539533 NRXN1Q9ULB1 1477 aa23.59■■□□□ 1.37
PCDHB17P-201ENST00000539533 ESF1Q9H501 851 aaKnown RBP23.59■■□□□ 1.37
PCDHB17P-201ENST00000539533 NUTM2DQ5VT03 806 aaPredicted RBP23.58■■□□□ 1.37
PCDHB17P-201ENST00000539533 TESK2Q96S53 571 aa23.57■■□□□ 1.36
PCDHB17P-201ENST00000539533 KIAA1210Q9ULL0 1709 aa23.57■■□□□ 1.36
PCDHB17P-201ENST00000539533 ZMYM3Q14202 1370 aa23.56■■□□□ 1.36
PCDHB17P-201ENST00000539533 IQGAP1P46940 1657 aa23.54■■□□□ 1.36
PCDHB17P-201ENST00000539533 TSHZ2Q9NRE2 1034 aa23.54■■□□□ 1.36
PCDHB17P-201ENST00000539533 MYO5BQ9ULV0 1848 aa23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 TMEM131LA2VDJ0 1609 aa23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 ANP32EQ9BTT0 268 aa23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 NEXMIFQ5QGS0 1516 aa23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 SCAF11Q99590 1463 aaKnown RBP23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 PIK3C2GO75747 1445 aa23.53■■□□□ 1.36
PCDHB17P-201ENST00000539533 SPATA31D1Q6ZQQ2 1576 aa23.52■■□□□ 1.36
PCDHB17P-201ENST00000539533 VGFO15240 615 aaPredicted RBP23.51■■□□□ 1.35
PCDHB17P-201ENST00000539533 C14orf93Q9H972 538 aaKnown RBP23.5■■□□□ 1.35
PCDHB17P-201ENST00000539533 DISP3Q9P2K9 1392 aa23.5■■□□□ 1.35
PCDHB17P-201ENST00000539533 STAG3Q9UJ98 1225 aa23.49■■□□□ 1.35
PCDHB17P-201ENST00000539533 CCER2I3L3R5 266 aa23.48■■□□□ 1.35
PCDHB17P-201ENST00000539533 SENP3Q9H4L4 574 aaPredicted RBP23.46■■□□□ 1.35
PCDHB17P-201ENST00000539533 TMF1P82094 1093 aa23.45■■□□□ 1.35
PCDHB17P-201ENST00000539533 TMEM132EQ6IEE7 984 aa23.45■■□□□ 1.35
PCDHB17P-201ENST00000539533 EIF3AQ14152 1382 aaKnown RBP23.43■■□□□ 1.34
PCDHB17P-201ENST00000539533 SETBP1Q9Y6X0 1596 aa23.43■■□□□ 1.34
PCDHB17P-201ENST00000539533 PRKRIP1Q9H875 184 aaPredicted RBP23.43■■□□□ 1.34
PCDHB17P-201ENST00000539533 ZFYVE9O95405 1425 aa23.43■■□□□ 1.34
PCDHB17P-201ENST00000539533 A2ML1A8K2U0 1454 aa23.41■■□□□ 1.34
PCDHB17P-201ENST00000539533 ADGRB1O14514 1584 aa23.41■■□□□ 1.34
PCDHB17P-201ENST00000539533 CEBPAP49715 358 aaPredicted RBP23.4■■□□□ 1.34
PCDHB17P-201ENST00000539533 TRAK1Q9UPV9 953 aa23.4■■□□□ 1.34
PCDHB17P-201ENST00000539533 CNGB1Q14028 1251 aaPredicted RBP23.39■■□□□ 1.33
PCDHB17P-201ENST00000539533 TNRQ92752 1358 aa23.38■■□□□ 1.33
PCDHB17P-201ENST00000539533 FKBP8Q14318 412 aa23.36■■□□□ 1.33
PCDHB17P-201ENST00000539533 BCANQ96GW7 911 aa23.35■■□□□ 1.33
PCDHB17P-201ENST00000539533 BCL11AQ9H165 835 aa23.35■■□□□ 1.33
PCDHB17P-201ENST00000539533 PLPPR3Q6T4P5 718 aa23.34■■□□□ 1.33
PCDHB17P-201ENST00000539533 RIMS2Q9UQ26 1411 aa23.33■■□□□ 1.33
PCDHB17P-201ENST00000539533 CCDC184Q52MB2 194 aa23.33■■□□□ 1.32
PCDHB17P-201ENST00000539533 CENPJQ9HC77 1338 aaPredicted RBP23.32■■□□□ 1.32
PCDHB17P-201ENST00000539533 FER1L4A9Z1Z3 1794 aa23.32■■□□□ 1.32
PCDHB17P-201ENST00000539533 MYO3AQ8NEV4 1616 aa23.31■■□□□ 1.32
PCDHB17P-201ENST00000539533 CDCA8Q53HL2 280 aa23.3■■□□□ 1.32
PCDHB17P-201ENST00000539533 PANK3Q9H999 370 aa23.3■■□□□ 1.32
PCDHB17P-201ENST00000539533 C3P01024 1663 aa23.3■■□□□ 1.32
PCDHB17P-201ENST00000539533 ASXL1Q8IXJ9 1541 aa23.29■■□□□ 1.32
PCDHB17P-201ENST00000539533 PER1O15534 1290 aaPredicted RBP23.29■■□□□ 1.32
PCDHB17P-201ENST00000539533 STK26Q9P289 416 aa23.28■■□□□ 1.32
PCDHB17P-201ENST00000539533 ALKQ9UM73 1620 aa23.27■■□□□ 1.32
PCDHB17P-201ENST00000539533 SLC24A1O60721 1099 aa23.27■■□□□ 1.32
PCDHB17P-201ENST00000539533 SBNO2Q9Y2G9 1366 aa23.26■■□□□ 1.31
PCDHB17P-201ENST00000539533 UBR1Q8IWV7 1749 aa23.25■■□□□ 1.31
PCDHB17P-201ENST00000539533 NEFLP07196 543 aa23.25■■□□□ 1.31
PCDHB17P-201ENST00000539533 QRICH2Q9H0J4 1663 aa23.24■■□□□ 1.31
PCDHB17P-201ENST00000539533 ARHGEF28Q8N1W1 1705 aaKnown RBP23.24■■□□□ 1.31
PCDHB17P-201ENST00000539533 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.23■■□□□ 1.31
PCDHB17P-201ENST00000539533 MRS2Q9HD23 443 aa23.22■■□□□ 1.31
PCDHB17P-201ENST00000539533 KDM5AP29375 1690 aaKnown RBP23.22■■□□□ 1.31
PCDHB17P-201ENST00000539533 TMEM2Q9UHN6 1383 aa23.22■■□□□ 1.31
PCDHB17P-201ENST00000539533 NLRP1Q9C000 1473 aa23.22■■□□□ 1.31
PCDHB17P-201ENST00000539533 YTHDC2Q9H6S0 1430 aaKnown RBP23.21■■□□□ 1.31
PCDHB17P-201ENST00000539533 SAFB2Q14151 953 aaKnown RBP eCLIP23.21■■□□□ 1.31
PCDHB17P-201ENST00000539533 PTPRMP28827 1452 aa23.2■■□□□ 1.3
PCDHB17P-201ENST00000539533 HDGFP51858 240 aaKnown RBP23.2■■□□□ 1.3
PCDHB17P-201ENST00000539533 MYOM1P52179 1685 aa23.19■■□□□ 1.3
PCDHB17P-201ENST00000539533 NRXN3Q9Y4C0 1643 aa23.17■■□□□ 1.3
PCDHB17P-201ENST00000539533 RALBP1Q15311 655 aa23.16■■□□□ 1.3
PCDHB17P-201ENST00000539533 CC2D1BQ5T0F9 858 aaKnown RBP23.16■■□□□ 1.3
PCDHB17P-201ENST00000539533 PRAM1Q96QH2 718 aa23.16■■□□□ 1.3
PCDHB17P-201ENST00000539533 KTN1Q86UP2 1357 aaKnown RBP23.16■■□□□ 1.3
PCDHB17P-201ENST00000539533 SETD1AO15047 1707 aaKnown RBP23.16■■□□□ 1.3
PCDHB17P-201ENST00000539533 LTKP29376 864 aa23.15■■□□□ 1.3
PCDHB17P-201ENST00000539533 RIMS1Q86UR5 1692 aaKnown RBP23.15■■□□□ 1.3
PCDHB17P-201ENST00000539533 FAM9BQ8IZU0 186 aa23.14■■□□□ 1.29
PCDHB17P-201ENST00000539533 PARD3Q8TEW0 1356 aa23.13■■□□□ 1.29
PCDHB17P-201ENST00000539533 POGKQ9P215 609 aa23.13■■□□□ 1.29
PCDHB17P-201ENST00000539533 METP08581 1390 aa23.13■■□□□ 1.29
PCDHB17P-201ENST00000539533 KNSTRNQ9Y448 316 aa23.13■■□□□ 1.29
PCDHB17P-201ENST00000539533 EVC2Q86UK5 1308 aa23.12■■□□□ 1.29
PCDHB17P-201ENST00000539533 MYBBP1AQ9BQG0 1328 aaKnown RBP23.12■■□□□ 1.29
PCDHB17P-201ENST00000539533 TXNDC2Q86VQ3 553 aa23.12■■□□□ 1.29
PCDHB17P-201ENST00000539533 TULP4Q9NRJ4 1543 aa23.12■■□□□ 1.29
PCDHB17P-201ENST00000539533 LRPPRCP42704 1394 aaKnown RBP23.1■■□□□ 1.29
PCDHB17P-201ENST00000539533 MINK1Q8N4C8 1332 aaPredicted RBP23.1■■□□□ 1.29
PCDHB17P-201ENST00000539533 ADAMTSL3P82987 1691 aa23.1■■□□□ 1.29
PCDHB17P-201ENST00000539533 TMC1Q8TDI8 760 aa23.09■■□□□ 1.29
PCDHB17P-201ENST00000539533 SLC12A5Q9H2X9 1139 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms