RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ZNF335Q9H4Z2 1342 aaPredicted RBP23.31■■□□□ 1.32
RPAIN-206ENST00000539417 EID1Q9Y6B2 187 aa23.3■■□□□ 1.32
RPAIN-206ENST00000539417 KIF1BO60333 1816 aa23.3■■□□□ 1.32
RPAIN-206ENST00000539417 LTBP4Q8N2S1 1624 aa23.28■■□□□ 1.32
RPAIN-206ENST00000539417 ZNF326Q5BKZ1 582 aaKnown RBP23.26■■□□□ 1.31
RPAIN-206ENST00000539417 CCDC144AA2RUR9 1427 aa23.26■■□□□ 1.31
RPAIN-206ENST00000539417 ANKRD30BQ9BXX2 1392 aa23.25■■□□□ 1.31
RPAIN-206ENST00000539417 NEXMIFQ5QGS0 1516 aa23.25■■□□□ 1.31
RPAIN-206ENST00000539417 SLC26A8Q96RN1 970 aa23.24■■□□□ 1.31
RPAIN-206ENST00000539417 PPP1R15AO75807 674 aaPredicted RBP23.22■■□□□ 1.31
RPAIN-206ENST00000539417 SPATA31E1Q6ZUB1 1445 aa23.22■■□□□ 1.31
RPAIN-206ENST00000539417 STRCP1A6NGW2 1772 aa23.22■■□□□ 1.31
RPAIN-206ENST00000539417 PLEKHG1Q9ULL1 1385 aa23.21■■□□□ 1.31
RPAIN-206ENST00000539417 RGL3Q3MIN7 710 aa23.19■■□□□ 1.3
RPAIN-206ENST00000539417 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.19■■□□□ 1.3
RPAIN-206ENST00000539417 CERKQ8TCT0 537 aa23.17■■□□□ 1.3
RPAIN-206ENST00000539417 BCANQ96GW7 911 aa23.17■■□□□ 1.3
RPAIN-206ENST00000539417 ADAMTS13Q76LX8 1427 aa23.17■■□□□ 1.3
RPAIN-206ENST00000539417 NRXN3Q9Y4C0 1643 aa23.17■■□□□ 1.3
RPAIN-206ENST00000539417 HDGFP51858 240 aaKnown RBP23.17■■□□□ 1.3
RPAIN-206ENST00000539417 PPLO60437 1756 aa23.16■■□□□ 1.3
RPAIN-206ENST00000539417 PCGF6Q9BYE7 350 aa23.15■■□□□ 1.3
RPAIN-206ENST00000539417 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
RPAIN-206ENST00000539417 IFT172Q9UG01 1749 aa23.13■■□□□ 1.29
RPAIN-206ENST00000539417 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
RPAIN-206ENST00000539417 SETBP1Q9Y6X0 1596 aa23.11■■□□□ 1.29
RPAIN-206ENST00000539417 ADGRF5Q8IZF2 1346 aa23.1■■□□□ 1.29
RPAIN-206ENST00000539417 TBX22Q9Y458 520 aa23.09■■□□□ 1.29
RPAIN-206ENST00000539417 CPS1P31327 1500 aa23.08■■□□□ 1.28
RPAIN-206ENST00000539417 PTPRUQ92729 1446 aa23.06■■□□□ 1.28
RPAIN-206ENST00000539417 VGFO15240 615 aaPredicted RBP23.06■■□□□ 1.28
RPAIN-206ENST00000539417 DIP2AQ14689 1571 aa23.06■■□□□ 1.28
RPAIN-206ENST00000539417 CHD2O14647 1828 aaKnown RBP23.06■■□□□ 1.28
RPAIN-206ENST00000539417 LRRC7Q96NW7 1537 aa23.05■■□□□ 1.28
RPAIN-206ENST00000539417 KCNA6P17658 529 aa23.05■■□□□ 1.28
RPAIN-206ENST00000539417 METP08581 1390 aa23.05■■□□□ 1.28
RPAIN-206ENST00000539417 NWD1Q149M9 1564 aa23.05■■□□□ 1.28
RPAIN-206ENST00000539417 SETD1AO15047 1707 aaKnown RBP23.05■■□□□ 1.28
RPAIN-206ENST00000539417 SIN3AQ96ST3 1273 aa23.05■■□□□ 1.28
RPAIN-206ENST00000539417 RBM33Q96EV2 1170 aaKnown RBP23.04■■□□□ 1.28
RPAIN-206ENST00000539417 ALKQ9UM73 1620 aa23.03■■□□□ 1.28
RPAIN-206ENST00000539417 XIRP1Q702N8 1843 aaKnown RBP23.02■■□□□ 1.28
RPAIN-206ENST00000539417 IQSEC2Q5JU85 1478 aa22.98■■□□□ 1.27
RPAIN-206ENST00000539417 PIK3C2GO75747 1445 aa22.98■■□□□ 1.27
RPAIN-206ENST00000539417 MYOM2P54296 1465 aa22.98■■□□□ 1.27
RPAIN-206ENST00000539417 NRXN1Q9ULB1 1477 aa22.98■■□□□ 1.27
RPAIN-206ENST00000539417 ILDR1Q86SU0 546 aaPredicted RBP22.98■■□□□ 1.27
RPAIN-206ENST00000539417 KDM2AQ9Y2K7 1162 aa22.98■■□□□ 1.27
RPAIN-206ENST00000539417 PIK3R4Q99570 1358 aa22.97■■□□□ 1.27
RPAIN-206ENST00000539417 DCAF11Q8TEB1 546 aa22.97■■□□□ 1.27
RPAIN-206ENST00000539417 AMOTL2Q9Y2J4 779 aa22.97■■□□□ 1.27
RPAIN-206ENST00000539417 TMEM94Q12767 1356 aa22.96■■□□□ 1.27
RPAIN-206ENST00000539417 XRN1Q8IZH2 1706 aaKnown RBP22.96■■□□□ 1.27
RPAIN-206ENST00000539417 NKTRP30414 1462 aaKnown RBP22.95■■□□□ 1.27
RPAIN-206ENST00000539417 NEUROD1Q13562 356 aa22.95■■□□□ 1.26
RPAIN-206ENST00000539417 PROSER2Q86WR7 435 aaPredicted RBP22.95■■□□□ 1.26
RPAIN-206ENST00000539417 FBXO41Q8TF61 875 aa22.95■■□□□ 1.26
RPAIN-206ENST00000539417 ASXL1Q8IXJ9 1541 aa22.95■■□□□ 1.26
RPAIN-206ENST00000539417 CFAP70Q5T0N1 1121 aa22.92■■□□□ 1.26
RPAIN-206ENST00000539417 TMEM132EQ6IEE7 984 aa22.92■■□□□ 1.26
RPAIN-206ENST00000539417 UBAP1LF5GYI3 381 aa22.89■■□□□ 1.25
RPAIN-206ENST00000539417 C14orf93Q9H972 538 aaKnown RBP22.89■■□□□ 1.25
RPAIN-206ENST00000539417 L3MBTL2Q969R5 705 aa22.87■■□□□ 1.25
RPAIN-206ENST00000539417 ROBO2Q9HCK4 1378 aa22.85■■□□□ 1.25
RPAIN-206ENST00000539417 STK26Q9P289 416 aa22.85■■□□□ 1.25
RPAIN-206ENST00000539417 LAMC1P11047 1609 aa22.82■■□□□ 1.24
RPAIN-206ENST00000539417 ADGRB1O14514 1584 aa22.82■■□□□ 1.24
RPAIN-206ENST00000539417 LRPPRCP42704 1394 aaKnown RBP22.81■■□□□ 1.24
RPAIN-206ENST00000539417 YTHDC2Q9H6S0 1430 aaKnown RBP22.81■■□□□ 1.24
RPAIN-206ENST00000539417 PIP4K2BP78356 416 aa22.8■■□□□ 1.24
RPAIN-206ENST00000539417 PTCH1Q13635 1447 aa22.8■■□□□ 1.24
RPAIN-206ENST00000539417 PRAG1Q86YV5 1406 aa22.8■■□□□ 1.24
RPAIN-206ENST00000539417 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.79■■□□□ 1.24
RPAIN-206ENST00000539417 TOM1O60784 492 aa22.79■■□□□ 1.24
RPAIN-206ENST00000539417 STAC3Q96MF2 364 aa22.79■■□□□ 1.24
RPAIN-206ENST00000539417 PLEKHH1Q9ULM0 1364 aa22.78■■□□□ 1.24
RPAIN-206ENST00000539417 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
RPAIN-206ENST00000539417 C14orf37Q86TY3 774 aa22.78■■□□□ 1.24
RPAIN-206ENST00000539417 NALCNQ8IZF0 1738 aa22.78■■□□□ 1.24
RPAIN-206ENST00000539417 NCOA3Q9Y6Q9 1424 aa22.78■■□□□ 1.24
RPAIN-206ENST00000539417 MSH6P52701 1360 aa22.77■■□□□ 1.24
RPAIN-206ENST00000539417 ABCC11Q96J66 1382 aa22.77■■□□□ 1.24
RPAIN-206ENST00000539417 KNDC1Q76NI1 1749 aa22.77■■□□□ 1.24
RPAIN-206ENST00000539417 TECPR2O15040 1411 aa22.77■■□□□ 1.24
RPAIN-206ENST00000539417 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
RPAIN-206ENST00000539417 NBPF1Q3BBV0 1214 aa22.75■■□□□ 1.23
RPAIN-206ENST00000539417 C19orf44Q9H6X5 657 aa22.73■■□□□ 1.23
RPAIN-206ENST00000539417 NBPF8Q3BBV2 869 aa22.73■■□□□ 1.23
RPAIN-206ENST00000539417 ADGRL3Q9HAR2 1447 aa22.72■■□□□ 1.23
RPAIN-206ENST00000539417 KIAA1210Q9ULL0 1709 aa22.71■■□□□ 1.23
RPAIN-206ENST00000539417 TRAK1Q9UPV9 953 aa22.71■■□□□ 1.23
RPAIN-206ENST00000539417 TONSLQ96HA7 1378 aa22.71■■□□□ 1.23
RPAIN-206ENST00000539417 SLAIN2Q9P270 581 aa22.68■■□□□ 1.22
RPAIN-206ENST00000539417 TRPM1Q7Z4N2 1603 aa22.68■■□□□ 1.22
RPAIN-206ENST00000539417 SAFB2Q14151 953 aaKnown RBP eCLIP22.67■■□□□ 1.22
RPAIN-206ENST00000539417 CCER1Q8TC90 406 aaPredicted RBP22.67■■□□□ 1.22
RPAIN-206ENST00000539417 PRAM1Q96QH2 718 aa22.67■■□□□ 1.22
RPAIN-206ENST00000539417 FAM135BQ49AJ0 1406 aa22.67■■□□□ 1.22
RPAIN-206ENST00000539417 ATF3P18847 181 aa22.66■■□□□ 1.22
RPAIN-206ENST00000539417 DLC1Q96QB1 1528 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 168.1 ms