RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 ARHGAP23Q9P227 1491 aa33.91■■■■□ 3.02
TMEM260-202ENST00000538838 THEMISQ8N1K5 641 aaPredicted RBP33.9■■■■□ 3.02
TMEM260-202ENST00000538838 DCAF11Q8TEB1 546 aa33.89■■■■□ 3.02
TMEM260-202ENST00000538838 RPGRIP1LQ68CZ1 1315 aa33.88■■■■□ 3.01
TMEM260-202ENST00000538838 TIMELESSQ9UNS1 1208 aa33.87■■■■□ 3.01
TMEM260-202ENST00000538838 MYOM2P54296 1465 aa33.87■■■■□ 3.01
TMEM260-202ENST00000538838 NUTM2DQ5VT03 806 aaPredicted RBP33.86■■■■□ 3.01
TMEM260-202ENST00000538838 KDM2AQ9Y2K7 1162 aa33.86■■■■□ 3.01
TMEM260-202ENST00000538838 POLR1AO95602 1720 aaPredicted RBP33.84■■■■□ 3.01
TMEM260-202ENST00000538838 SCAF11Q99590 1463 aaKnown RBP33.79■■■■□ 3
TMEM260-202ENST00000538838 ADGRF5Q8IZF2 1346 aa33.79■■■■□ 3
TMEM260-202ENST00000538838 HSPA2P54652 639 aa33.79■■■■□ 3
TMEM260-202ENST00000538838 NRXN1Q9ULB1 1477 aa33.78■■■■□ 3
TMEM260-202ENST00000538838 LTKP29376 864 aa33.77■■■■□ 3
TMEM260-202ENST00000538838 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.76■■■■□ 3
TMEM260-202ENST00000538838 PRAG1Q86YV5 1406 aa33.76■■■■□ 3
TMEM260-202ENST00000538838 IQGAP1P46940 1657 aa33.76■■■□□ 2.99
TMEM260-202ENST00000538838 PPP1R15AO75807 674 aaPredicted RBP33.75■■■□□ 2.99
TMEM260-202ENST00000538838 VGFO15240 615 aaPredicted RBP33.75■■■□□ 2.99
TMEM260-202ENST00000538838 TXNDC2Q86VQ3 553 aa33.75■■■□□ 2.99
TMEM260-202ENST00000538838 EID1Q9Y6B2 187 aa33.75■■■□□ 2.99
TMEM260-202ENST00000538838 PIK3C2GO75747 1445 aa33.73■■■□□ 2.99
TMEM260-202ENST00000538838 NRXN3Q9Y4C0 1643 aa33.73■■■□□ 2.99
TMEM260-202ENST00000538838 ZEB1P37275 1124 aaPredicted RBP33.72■■■□□ 2.99
TMEM260-202ENST00000538838 HDGFP51858 240 aaKnown RBP33.72■■■□□ 2.99
TMEM260-202ENST00000538838 STAC3Q96MF2 364 aa33.72■■■□□ 2.99
TMEM260-202ENST00000538838 SENP3Q9H4L4 574 aaPredicted RBP33.71■■■□□ 2.99
TMEM260-202ENST00000538838 TRPM1Q7Z4N2 1603 aa33.71■■■□□ 2.99
TMEM260-202ENST00000538838 STRCQ7RTU9 1775 aa33.7■■■□□ 2.98
TMEM260-202ENST00000538838 SETBP1Q9Y6X0 1596 aa33.7■■■□□ 2.98
TMEM260-202ENST00000538838 AEBP2Q6ZN18 517 aaPredicted RBP33.69■■■□□ 2.98
TMEM260-202ENST00000538838 ANKLE2Q86XL3 938 aa33.69■■■□□ 2.98
TMEM260-202ENST00000538838 PLEKHG1Q9ULL1 1385 aa33.69■■■□□ 2.98
TMEM260-202ENST00000538838 NBPF8Q3BBV2 869 aa33.68■■■□□ 2.98
TMEM260-202ENST00000538838 LAMC1P11047 1609 aa33.67■■■□□ 2.98
TMEM260-202ENST00000538838 SETD1AO15047 1707 aaKnown RBP33.67■■■□□ 2.98
TMEM260-202ENST00000538838 KIAA1210Q9ULL0 1709 aa33.67■■■□□ 2.98
TMEM260-202ENST00000538838 NCKAP5LQ9HCH0 1330 aa33.66■■■□□ 2.98
TMEM260-202ENST00000538838 MED14O60244 1454 aa33.63■■■□□ 2.97
TMEM260-202ENST00000538838 ALKQ9UM73 1620 aa33.63■■■□□ 2.97
TMEM260-202ENST00000538838 NPHP4O75161 1426 aaPredicted RBP33.61■■■□□ 2.97
TMEM260-202ENST00000538838 RALGAPBQ86X10 1494 aa33.6■■■□□ 2.97
TMEM260-202ENST00000538838 BCANQ96GW7 911 aa33.59■■■□□ 2.97
TMEM260-202ENST00000538838 ADAMTS13Q76LX8 1427 aa33.58■■■□□ 2.97
TMEM260-202ENST00000538838 DIP2AQ14689 1571 aa33.57■■■□□ 2.97
TMEM260-202ENST00000538838 CFAP70Q5T0N1 1121 aa33.57■■■□□ 2.97
TMEM260-202ENST00000538838 ASXL1Q8IXJ9 1541 aa33.56■■■□□ 2.96
TMEM260-202ENST00000538838 C14orf93Q9H972 538 aaKnown RBP33.54■■■□□ 2.96
TMEM260-202ENST00000538838 ADGRB1O14514 1584 aa33.52■■■□□ 2.96
TMEM260-202ENST00000538838 SLC26A8Q96RN1 970 aa33.51■■■□□ 2.96
TMEM260-202ENST00000538838 NBPF1Q3BBV0 1214 aa33.5■■■□□ 2.95
TMEM260-202ENST00000538838 ROCK2O75116 1388 aaKnown RBP33.5■■■□□ 2.95
TMEM260-202ENST00000538838 METP08581 1390 aa33.46■■■□□ 2.95
TMEM260-202ENST00000538838 GPRASP1Q5JY77 1395 aa33.45■■■□□ 2.94
TMEM260-202ENST00000538838 TMEM132EQ6IEE7 984 aa33.44■■■□□ 2.94
TMEM260-202ENST00000538838 TBX22Q9Y458 520 aa33.43■■■□□ 2.94
TMEM260-202ENST00000538838 CHD2O14647 1828 aaKnown RBP33.4■■■□□ 2.94
TMEM260-202ENST00000538838 KNDC1Q76NI1 1749 aa33.39■■■□□ 2.94
TMEM260-202ENST00000538838 CARD11Q9BXL7 1154 aa33.39■■■□□ 2.93
TMEM260-202ENST00000538838 YTHDC2Q9H6S0 1430 aaKnown RBP33.37■■■□□ 2.93
TMEM260-202ENST00000538838 XRN1Q8IZH2 1706 aaKnown RBP33.37■■■□□ 2.93
TMEM260-202ENST00000538838 PTPRUQ92729 1446 aa33.37■■■□□ 2.93
TMEM260-202ENST00000538838 ARHGEF28Q8N1W1 1705 aaKnown RBP33.36■■■□□ 2.93
TMEM260-202ENST00000538838 PIK3R4Q99570 1358 aa33.34■■■□□ 2.93
TMEM260-202ENST00000538838 LRPPRCP42704 1394 aaKnown RBP33.32■■■□□ 2.92
TMEM260-202ENST00000538838 NWD1Q149M9 1564 aa33.32■■■□□ 2.92
TMEM260-202ENST00000538838 STK26Q9P289 416 aa33.31■■■□□ 2.92
TMEM260-202ENST00000538838 STRCP1A6NGW2 1772 aa33.31■■■□□ 2.92
TMEM260-202ENST00000538838 DMRT2Q9Y5R5 561 aa33.3■■■□□ 2.92
TMEM260-202ENST00000538838 CPS1P31327 1500 aa33.3■■■□□ 2.92
TMEM260-202ENST00000538838 USP47Q96K76 1375 aa33.28■■■□□ 2.92
TMEM260-202ENST00000538838 TRAK1Q9UPV9 953 aa33.28■■■□□ 2.92
TMEM260-202ENST00000538838 DLC1Q96QB1 1528 aa33.27■■■□□ 2.92
TMEM260-202ENST00000538838 TECPR2O15040 1411 aa33.26■■■□□ 2.92
TMEM260-202ENST00000538838 ABCC11Q96J66 1382 aa33.25■■■□□ 2.91
TMEM260-202ENST00000538838 AMOTL2Q9Y2J4 779 aa33.24■■■□□ 2.91
TMEM260-202ENST00000538838 QRICH2Q9H0J4 1663 aa33.22■■■□□ 2.91
TMEM260-202ENST00000538838 PTCH1Q13635 1447 aa33.21■■■□□ 2.91
TMEM260-202ENST00000538838 EIF3AQ14152 1382 aaKnown RBP33.21■■■□□ 2.91
TMEM260-202ENST00000538838 KCNA6P17658 529 aa33.2■■■□□ 2.91
TMEM260-202ENST00000538838 ROBO2Q9HCK4 1378 aa33.2■■■□□ 2.91
TMEM260-202ENST00000538838 NKTRP30414 1462 aaKnown RBP33.18■■■□□ 2.9
TMEM260-202ENST00000538838 ZNF335Q9H4Z2 1342 aaPredicted RBP33.18■■■□□ 2.9
TMEM260-202ENST00000538838 EIF4G2P78344 907 aaKnown RBP eCLIP33.17■■■□□ 2.9
TMEM260-202ENST00000538838 HSPA5P11021 654 aaKnown RBP33.16■■■□□ 2.9
TMEM260-202ENST00000538838 FAM135BQ49AJ0 1406 aa33.15■■■□□ 2.9
TMEM260-202ENST00000538838 PLEKHH1Q9ULM0 1364 aa33.15■■■□□ 2.9
TMEM260-202ENST00000538838 PRAM1Q96QH2 718 aa33.14■■■□□ 2.9
TMEM260-202ENST00000538838 ST20-MTHFSA0A0A6YYL1 179 aa33.12■■■□□ 2.89
TMEM260-202ENST00000538838 WAPLQ7Z5K2 1190 aa33.12■■■□□ 2.89
TMEM260-202ENST00000538838 CENPJQ9HC77 1338 aaPredicted RBP33.11■■■□□ 2.89
TMEM260-202ENST00000538838 HIRIP3Q9BW71 556 aaPredicted RBP33.11■■■□□ 2.89
TMEM260-202ENST00000538838 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.1■■■□□ 2.89
TMEM260-202ENST00000538838 SAFB2Q14151 953 aaKnown RBP eCLIP33.1■■■□□ 2.89
TMEM260-202ENST00000538838 POGKQ9P215 609 aa33.1■■■□□ 2.89
TMEM260-202ENST00000538838 SIRT1Q96EB6 747 aa33.09■■■□□ 2.89
TMEM260-202ENST00000538838 NALCNQ8IZF0 1738 aa33.08■■■□□ 2.89
TMEM260-202ENST00000538838 XIRP1Q702N8 1843 aaKnown RBP33.08■■■□□ 2.89
TMEM260-202ENST00000538838 LTBP4Q8N2S1 1624 aa33.03■■■□□ 2.88
TMEM260-202ENST00000538838 RBM33Q96EV2 1170 aaKnown RBP33.03■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms