RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 IL27Q8NEV9 243 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 RUFY2Q8WXA3 655 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 PCMTD1Q96MG8 357 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-208ENST00000538570 E9PSI1 815 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 EID1Q9Y6B2 187 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 ANKRD20A12PQ8NF67 263 aa12.14□□□□□ -0.47
COL4A6-208ENST00000538570 CCDC47Q96A33 483 aaKnown RBP12.13□□□□□ -0.47
COL4A6-208ENST00000538570 RRP1P56182 461 aaKnown RBP12.13□□□□□ -0.47
COL4A6-208ENST00000538570 RAPGEF2Q9Y4G8 1499 aa12.13□□□□□ -0.47
COL4A6-208ENST00000538570 KIF3BO15066 747 aa12.13□□□□□ -0.47
COL4A6-208ENST00000538570 REC8O95072 547 aa12.13□□□□□ -0.47
COL4A6-208ENST00000538570 CRBNQ96SW2 442 aa12.12□□□□□ -0.47
COL4A6-208ENST00000538570 HOOK1Q9UJC3 728 aaKnown RBP12.12□□□□□ -0.47
COL4A6-208ENST00000538570 R3HCC1Q9Y3T6 440 aaKnown RBP12.12□□□□□ -0.47
COL4A6-208ENST00000538570 BCL2L13Q9BXK5 485 aa12.12□□□□□ -0.47
COL4A6-208ENST00000538570 CGNL1Q0VF96 1302 aa12.12□□□□□ -0.47
COL4A6-208ENST00000538570 ZKSCAN1P17029 563 aaPredicted RBP12.11□□□□□ -0.47
COL4A6-208ENST00000538570 HOMER1Q86YM7 354 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 EXOC6Q8TAG9 804 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 PLIN1O60240 522 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 AMOTL1Q8IY63 956 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 ANO2Q9NQ90 1003 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 ZNF526Q8TF50 670 aaPredicted RBP12.11□□□□□ -0.47
COL4A6-208ENST00000538570 RRP9O43818 475 aaKnown RBP12.11□□□□□ -0.47
COL4A6-208ENST00000538570 NEFHP12036 1026 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 ZMYND15Q9H091 742 aa12.11□□□□□ -0.47
COL4A6-208ENST00000538570 ELL2O00472 640 aaPredicted RBP12.1□□□□□ -0.47
COL4A6-208ENST00000538570 RDXP35241 583 aaKnown RBP12.1□□□□□ -0.47
COL4A6-208ENST00000538570 C1orf141Q5JVX7 400 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 NUTM2DQ5VT03 806 aaPredicted RBP12.1□□□□□ -0.47
COL4A6-208ENST00000538570 TCEAL9Q9UHQ7 104 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 PANK3Q9H999 370 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 BRPF3Q9ULD4 1205 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 WWC1Q8IX03 1113 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 BICD2Q8TD16 824 aa12.1□□□□□ -0.47
COL4A6-208ENST00000538570 NOL10Q9BSC4 688 aaKnown RBP12.09□□□□□ -0.47
COL4A6-208ENST00000538570 CHMP5Q9NZZ3 219 aa12.09□□□□□ -0.47
COL4A6-208ENST00000538570 TRAK1Q9UPV9 953 aa12.09□□□□□ -0.47
COL4A6-208ENST00000538570 CWC15Q9P013 229 aaKnown RBP12.09□□□□□ -0.47
COL4A6-208ENST00000538570 COG6Q9Y2V7 657 aa12.09□□□□□ -0.47
COL4A6-208ENST00000538570 CPLX1O14810 134 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 BBXQ8WY36 941 aaPredicted RBP12.08□□□□□ -0.48
COL4A6-208ENST00000538570 NEXNQ0ZGT2 675 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 DDX19BQ9UMR2 479 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 HNRNPMP52272 730 aaKnown RBP eCLIP12.08□□□□□ -0.48
COL4A6-208ENST00000538570 HSP90AB3PQ58FF7 597 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 PAXIP1Q6ZW49 1069 aaPredicted RBP12.08□□□□□ -0.48
COL4A6-208ENST00000538570 ZBED9Q6R2W3 1325 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 WASHC2CQ9Y4E1 1318 aa12.08□□□□□ -0.48
COL4A6-208ENST00000538570 RSPH4AQ5TD94 716 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 COG3Q96JB2 828 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 RNF20Q5VTR2 975 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 IFIT2P09913 472 aaKnown RBP12.07□□□□□ -0.48
COL4A6-208ENST00000538570 RRP12Q5JTH9 1297 aaKnown RBP12.07□□□□□ -0.48
COL4A6-208ENST00000538570 SASS6Q6UVJ0 657 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 AK7Q96M32 723 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 RUFY1Q96T51 708 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 FHOD3Q2V2M9 1422 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 CDR1P51861 262 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 TRIM34Q9BYJ4 488 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 TAF3Q5VWG9 929 aa12.07□□□□□ -0.48
COL4A6-208ENST00000538570 C9orf78Q9NZ63 289 aaPredicted RBP12.07□□□□□ -0.48
COL4A6-208ENST00000538570 NFKBIBQ15653 356 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 ACBD3Q9H3P7 528 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 ARGLU1Q9NWB6 273 aaPredicted RBP12.06□□□□□ -0.48
COL4A6-208ENST00000538570 RBM10P98175 930 aaKnown RBP12.06□□□□□ -0.48
COL4A6-208ENST00000538570 ROCK1Q13464 1354 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 JPH4Q96JJ6 628 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 NUTM2FA1L443 756 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 TEFQ10587 303 aa12.06□□□□□ -0.48
COL4A6-208ENST00000538570 UACAQ9BZF9 1416 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 ST20-MTHFSA0A0A6YYL1 179 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 TRDNQ13061 729 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 CTDP1Q9Y5B0 961 aaPredicted RBP12.05□□□□□ -0.48
COL4A6-208ENST00000538570 SMARCA4P51532 1647 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 NUCB2P80303 420 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 RAD21O60216 631 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 SMC3Q9UQE7 1217 aa12.05□□□□□ -0.48
COL4A6-208ENST00000538570 MNS1Q8NEH6 495 aa12.04□□□□□ -0.48
COL4A6-208ENST00000538570 CCDC18Q5T9S5 1454 aa12.04□□□□□ -0.48
COL4A6-208ENST00000538570 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
COL4A6-208ENST00000538570 API5Q9BZZ5 524 aaKnown RBP12.04□□□□□ -0.48
COL4A6-208ENST00000538570 INTS3Q68E01 1043 aaKnown RBP12.04□□□□□ -0.48
COL4A6-208ENST00000538570 TTC5Q8N0Z6 440 aa12.04□□□□□ -0.48
COL4A6-208ENST00000538570 EVC2Q86UK5 1308 aa12.04□□□□□ -0.48
COL4A6-208ENST00000538570 VPS37CA5D8V6 355 aaPredicted RBP12.04□□□□□ -0.48
COL4A6-208ENST00000538570 NFXL1Q6ZNB6 911 aa12.03□□□□□ -0.48
COL4A6-208ENST00000538570 IFT57Q9NWB7 429 aa12.03□□□□□ -0.48
COL4A6-208ENST00000538570 EIF2S2P20042 333 aaKnown RBP12.03□□□□□ -0.48
COL4A6-208ENST00000538570 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.03□□□□□ -0.48
COL4A6-208ENST00000538570 ERICH2A1L162 156 aa12.03□□□□□ -0.48
COL4A6-208ENST00000538570 MRE11P49959 708 aa12.03□□□□□ -0.48
COL4A6-208ENST00000538570 DZIP1LQ8IYY4 767 aaKnown RBP12.03□□□□□ -0.48
COL4A6-208ENST00000538570 DHX16O60231 1041 aaKnown RBP12.03□□□□□ -0.48
COL4A6-208ENST00000538570 PRKRIP1Q9H875 184 aaPredicted RBP12.03□□□□□ -0.48
COL4A6-208ENST00000538570 CCDC73Q6ZRK6 1079 aa12.03□□□□□ -0.48
COL4A6-208ENST00000538570 NAP1L1P55209 391 aaKnown RBP12.02□□□□□ -0.48
COL4A6-208ENST00000538570 NGEFQ8N5V2 710 aa12.02□□□□□ -0.48
COL4A6-208ENST00000538570 FBXO3Q9UK99 471 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms