RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 SPHKAPQ2M3C7 1700 aa23.34■■□□□ 1.33
CAPN1-213ENST00000527897 RIMS2Q9UQ26 1411 aa23.33■■□□□ 1.33
CAPN1-213ENST00000527897 NUTM2DQ5VT03 806 aaPredicted RBP23.32■■□□□ 1.32
CAPN1-213ENST00000527897 HDGFP51858 240 aaKnown RBP23.31■■□□□ 1.32
CAPN1-213ENST00000527897 PIP4K2BP78356 416 aa23.3■■□□□ 1.32
CAPN1-213ENST00000527897 ZFYVE9O95405 1425 aa23.29■■□□□ 1.32
CAPN1-213ENST00000527897 LRRC7Q96NW7 1537 aa23.28■■□□□ 1.32
CAPN1-213ENST00000527897 TOM1O60784 492 aa23.27■■□□□ 1.32
CAPN1-213ENST00000527897 SLC4A1APQ9BWU0 796 aaKnown RBP23.27■■□□□ 1.32
CAPN1-213ENST00000527897 ZNF326Q5BKZ1 582 aaKnown RBP23.26■■□□□ 1.31
CAPN1-213ENST00000527897 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.26■■□□□ 1.31
CAPN1-213ENST00000527897 PLEKHG1Q9ULL1 1385 aa23.25■■□□□ 1.31
CAPN1-213ENST00000527897 CLTCL1P53675 1640 aa23.22■■□□□ 1.31
CAPN1-213ENST00000527897 KCNA6P17658 529 aa23.21■■□□□ 1.31
CAPN1-213ENST00000527897 TRPM2O94759 1503 aa23.21■■□□□ 1.31
CAPN1-213ENST00000527897 FOXD1Q16676 465 aa23.19■■□□□ 1.3
CAPN1-213ENST00000527897 PROSER2Q86WR7 435 aaPredicted RBP23.19■■□□□ 1.3
CAPN1-213ENST00000527897 RBM33Q96EV2 1170 aaKnown RBP23.19■■□□□ 1.3
CAPN1-213ENST00000527897 KIF1BO60333 1816 aa23.19■■□□□ 1.3
CAPN1-213ENST00000527897 XIRP1Q702N8 1843 aaKnown RBP23.18■■□□□ 1.3
CAPN1-213ENST00000527897 TMEM94Q12767 1356 aa23.15■■□□□ 1.3
CAPN1-213ENST00000527897 TBX22Q9Y458 520 aa23.14■■□□□ 1.29
CAPN1-213ENST00000527897 NWD1Q149M9 1564 aa23.14■■□□□ 1.29
CAPN1-213ENST00000527897 CHD2O14647 1828 aaKnown RBP23.13■■□□□ 1.29
CAPN1-213ENST00000527897 ALKQ9UM73 1620 aa23.13■■□□□ 1.29
CAPN1-213ENST00000527897 ADAMTS13Q76LX8 1427 aa23.13■■□□□ 1.29
CAPN1-213ENST00000527897 SETD5Q9C0A6 1442 aa23.13■■□□□ 1.29
CAPN1-213ENST00000527897 HSPA1LP34931 641 aa23.12■■□□□ 1.29
CAPN1-213ENST00000527897 MPHOSPH9Q99550 1183 aa23.12■■□□□ 1.29
CAPN1-213ENST00000527897 NKTRP30414 1462 aaKnown RBP23.11■■□□□ 1.29
CAPN1-213ENST00000527897 DIP2AQ14689 1571 aa23.1■■□□□ 1.29
CAPN1-213ENST00000527897 NEXMIFQ5QGS0 1516 aa23.08■■□□□ 1.29
CAPN1-213ENST00000527897 RAB3GAP2Q9H2M9 1393 aa23.06■■□□□ 1.28
CAPN1-213ENST00000527897 DISP3Q9P2K9 1392 aa23.06■■□□□ 1.28
CAPN1-213ENST00000527897 C14orf37Q86TY3 774 aa23.06■■□□□ 1.28
CAPN1-213ENST00000527897 NRXN3Q9Y4C0 1643 aa23.05■■□□□ 1.28
CAPN1-213ENST00000527897 MSH6P52701 1360 aa23.04■■□□□ 1.28
CAPN1-213ENST00000527897 CCDC144AA2RUR9 1427 aa23.04■■□□□ 1.28
CAPN1-213ENST00000527897 SETBP1Q9Y6X0 1596 aa23.04■■□□□ 1.28
CAPN1-213ENST00000527897 AMOTL2Q9Y2J4 779 aa23.03■■□□□ 1.28
CAPN1-213ENST00000527897 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
CAPN1-213ENST00000527897 RGL3Q3MIN7 710 aa23.01■■□□□ 1.27
CAPN1-213ENST00000527897 ACIN1Q9UKV3 1341 aaKnown RBP23.01■■□□□ 1.27
CAPN1-213ENST00000527897 PTPRUQ92729 1446 aa23■■□□□ 1.27
CAPN1-213ENST00000527897 VGFO15240 615 aaPredicted RBP23■■□□□ 1.27
CAPN1-213ENST00000527897 METP08581 1390 aa22.99■■□□□ 1.27
CAPN1-213ENST00000527897 RPGRIP1LQ68CZ1 1315 aa22.98■■□□□ 1.27
CAPN1-213ENST00000527897 PPLO60437 1756 aa22.98■■□□□ 1.27
CAPN1-213ENST00000527897 ROBO1Q9Y6N7 1651 aa22.94■■□□□ 1.26
CAPN1-213ENST00000527897 XRN1Q8IZH2 1706 aaKnown RBP22.94■■□□□ 1.26
CAPN1-213ENST00000527897 SLAIN2Q9P270 581 aa22.93■■□□□ 1.26
CAPN1-213ENST00000527897 FAM135BQ49AJ0 1406 aa22.92■■□□□ 1.26
CAPN1-213ENST00000527897 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.92■■□□□ 1.26
CAPN1-213ENST00000527897 ATF3P18847 181 aa22.92■■□□□ 1.26
CAPN1-213ENST00000527897 NCOA3Q9Y6Q9 1424 aa22.91■■□□□ 1.26
CAPN1-213ENST00000527897 SPATA31E1Q6ZUB1 1445 aa22.91■■□□□ 1.26
CAPN1-213ENST00000527897 C19orf44Q9H6X5 657 aa22.9■■□□□ 1.26
CAPN1-213ENST00000527897 SETD1AO15047 1707 aaKnown RBP22.88■■□□□ 1.25
CAPN1-213ENST00000527897 ADGRF5Q8IZF2 1346 aa22.88■■□□□ 1.25
CAPN1-213ENST00000527897 CADPS2Q86UW7 1296 aa22.88■■□□□ 1.25
CAPN1-213ENST00000527897 MED1Q15648 1581 aaPredicted RBP22.87■■□□□ 1.25
CAPN1-213ENST00000527897 IFT172Q9UG01 1749 aa22.87■■□□□ 1.25
CAPN1-213ENST00000527897 ANKRD30BQ9BXX2 1392 aa22.86■■□□□ 1.25
CAPN1-213ENST00000527897 ILDR2Q71H61 639 aa22.82■■□□□ 1.24
CAPN1-213ENST00000527897 PHLPP1O60346 1717 aa22.82■■□□□ 1.24
CAPN1-213ENST00000527897 HRCP23327 699 aa22.81■■□□□ 1.24
CAPN1-213ENST00000527897 NALCNQ8IZF0 1738 aa22.8■■□□□ 1.24
CAPN1-213ENST00000527897 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
CAPN1-213ENST00000527897 STK26Q9P289 416 aa22.8■■□□□ 1.24
CAPN1-213ENST00000527897 ROBO2Q9HCK4 1378 aa22.79■■□□□ 1.24
CAPN1-213ENST00000527897 ADGRL3Q9HAR2 1447 aa22.79■■□□□ 1.24
CAPN1-213ENST00000527897 DCCP43146 1447 aa22.78■■□□□ 1.24
CAPN1-213ENST00000527897 PTCH1Q13635 1447 aa22.78■■□□□ 1.24
CAPN1-213ENST00000527897 TMEM132EQ6IEE7 984 aa22.77■■□□□ 1.24
CAPN1-213ENST00000527897 PIK3C2GO75747 1445 aa22.76■■□□□ 1.23
CAPN1-213ENST00000527897 BRINP3Q76B58 766 aa22.74■■□□□ 1.23
CAPN1-213ENST00000527897 MST1RQ04912 1400 aa22.74■■□□□ 1.23
CAPN1-213ENST00000527897 KDM2AQ9Y2K7 1162 aa22.73■■□□□ 1.23
CAPN1-213ENST00000527897 ASXL1Q8IXJ9 1541 aa22.72■■□□□ 1.23
CAPN1-213ENST00000527897 CFAP70Q5T0N1 1121 aa22.71■■□□□ 1.23
CAPN1-213ENST00000527897 MYOM2P54296 1465 aa22.71■■□□□ 1.23
CAPN1-213ENST00000527897 COL16A1Q07092 1604 aaPredicted RBP22.71■■□□□ 1.23
CAPN1-213ENST00000527897 DCAF11Q8TEB1 546 aa22.7■■□□□ 1.22
CAPN1-213ENST00000527897 PRAG1Q86YV5 1406 aa22.69■■□□□ 1.22
CAPN1-213ENST00000527897 LRPPRCP42704 1394 aaKnown RBP22.69■■□□□ 1.22
CAPN1-213ENST00000527897 WAPLQ7Z5K2 1190 aa22.69■■□□□ 1.22
CAPN1-213ENST00000527897 AHDC1Q5TGY3 1603 aaPredicted RBP22.68■■□□□ 1.22
CAPN1-213ENST00000527897 JCADQ9P266 1359 aa22.68■■□□□ 1.22
CAPN1-213ENST00000527897 NRXN1Q9ULB1 1477 aa22.67■■□□□ 1.22
CAPN1-213ENST00000527897 YTHDC2Q9H6S0 1430 aaKnown RBP22.67■■□□□ 1.22
CAPN1-213ENST00000527897 C14orf93Q9H972 538 aaKnown RBP22.67■■□□□ 1.22
CAPN1-213ENST00000527897 LAMC1P11047 1609 aa22.67■■□□□ 1.22
CAPN1-213ENST00000527897 KNDC1Q76NI1 1749 aa22.66■■□□□ 1.22
CAPN1-213ENST00000527897 DDX17Q92841 729 aaKnown RBP22.66■■□□□ 1.22
CAPN1-213ENST00000527897 C1orf167Q5SNV9 1468 aa22.66■■□□□ 1.22
CAPN1-213ENST00000527897 TECPR2O15040 1411 aa22.65■■□□□ 1.22
CAPN1-213ENST00000527897 DHX57Q6P158 1386 aaKnown RBP22.64■■□□□ 1.22
CAPN1-213ENST00000527897 ABCC11Q96J66 1382 aa22.64■■□□□ 1.22
CAPN1-213ENST00000527897 PLEKHH1Q9ULM0 1364 aa22.64■■□□□ 1.22
CAPN1-213ENST00000527897 NHSL1Q5SYE7 1610 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms