RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 ADGRB3O60242 1522 aa28■■■□□ 2.07
PVT1-220ENST00000524165 KANK1Q14678 1352 aa27.97■■■□□ 2.07
PVT1-220ENST00000524165 KIF15Q9NS87 1388 aa27.97■■■□□ 2.07
PVT1-220ENST00000524165 BCANQ96GW7 911 aa27.96■■■□□ 2.07
PVT1-220ENST00000524165 LMTK2Q8IWU2 1503 aa27.96■■■□□ 2.07
PVT1-220ENST00000524165 MYOM3Q5VTT5 1437 aa27.95■■■□□ 2.07
PVT1-220ENST00000524165 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.93■■■□□ 2.06
PVT1-220ENST00000524165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.93■■■□□ 2.065e-6■■■■□ 19.5
PVT1-220ENST00000524165 DIP2AQ14689 1571 aa27.93■■■□□ 2.06
PVT1-220ENST00000524165 NOS1P29475 1434 aa27.92■■■□□ 2.06
PVT1-220ENST00000524165 PLEKHG1Q9ULL1 1385 aa27.91■■■□□ 2.06
PVT1-220ENST00000524165 CADPS2Q86UW7 1296 aa27.91■■■□□ 2.06
PVT1-220ENST00000524165 CROCC2H7BZ55 1655 aa27.9■■■□□ 2.06
PVT1-220ENST00000524165 AFF2P51816 1311 aa27.9■■■□□ 2.06
PVT1-220ENST00000524165 SLC52A1Q9NWF4 448 aa27.89■■■□□ 2.06
PVT1-220ENST00000524165 ZFYVE9O95405 1425 aa27.88■■■□□ 2.05
PVT1-220ENST00000524165 RGS12O14924 1447 aa27.87■■■□□ 2.05
PVT1-220ENST00000524165 C19orf44Q9H6X5 657 aa27.87■■■□□ 2.05
PVT1-220ENST00000524165 NUTM2BA6NNL0 878 aaPredicted RBP27.86■■■□□ 2.05
PVT1-220ENST00000524165 NUTM2EB1AL46 878 aaPredicted RBP27.86■■■□□ 2.05
PVT1-220ENST00000524165 C14orf37Q86TY3 774 aa27.86■■■□□ 2.05
PVT1-220ENST00000524165 NUTM2AQ8IVF1 878 aaPredicted RBP27.86■■■□□ 2.05
PVT1-220ENST00000524165 RRP7BPQ9NSQ0 103 aa27.86■■■□□ 2.05
PVT1-220ENST00000524165 MYO5BQ9ULV0 1848 aa27.85■■■□□ 2.05
PVT1-220ENST00000524165 ATF3P18847 181 aa27.85■■■□□ 2.05
PVT1-220ENST00000524165 TBX22Q9Y458 520 aa27.84■■■□□ 2.05
PVT1-220ENST00000524165 HDGFP51858 240 aaKnown RBP27.83■■■□□ 2.05
PVT1-220ENST00000524165 RBM6P78332 1123 aaKnown RBP27.83■■■□□ 2.05
PVT1-220ENST00000524165 BRINP3Q76B58 766 aa27.81■■■□□ 2.04
PVT1-220ENST00000524165 ABCC5O15440 1437 aa27.8■■■□□ 2.04
PVT1-220ENST00000524165 SETD5Q9C0A6 1442 aa27.8■■■□□ 2.04
PVT1-220ENST00000524165 RIMS2Q9UQ26 1411 aa27.79■■■□□ 2.04
PVT1-220ENST00000524165 PPP1R15AO75807 674 aaPredicted RBP27.79■■■□□ 2.04
PVT1-220ENST00000524165 FOXD1Q16676 465 aa27.79■■■□□ 2.04
PVT1-220ENST00000524165 QTRT2Q9H974 415 aaKnown RBP27.78■■■□□ 2.04
PVT1-220ENST00000524165 GCC2Q8IWJ2 1684 aa27.78■■■□□ 2.04
PVT1-220ENST00000524165 NUTM2DQ5VT03 806 aaPredicted RBP27.77■■■□□ 2.04
PVT1-220ENST00000524165 PIK3R4Q99570 1358 aa27.76■■■□□ 2.03
PVT1-220ENST00000524165 NHSL1Q5SYE7 1610 aa27.75■■■□□ 2.03
PVT1-220ENST00000524165 RPRD2Q5VT52 1461 aaKnown RBP27.75■■■□□ 2.03
PVT1-220ENST00000524165 TMEM131LA2VDJ0 1609 aa27.74■■■□□ 2.03
PVT1-220ENST00000524165 ATAD2Q6PL18 1390 aa27.74■■■□□ 2.03
PVT1-220ENST00000524165 ASXL1Q8IXJ9 1541 aa27.74■■■□□ 2.03
PVT1-220ENST00000524165 DCCP43146 1447 aa27.74■■■□□ 2.03
PVT1-220ENST00000524165 ZRANB1Q9UGI0 708 aa27.73■■■□□ 2.03
PVT1-220ENST00000524165 ADAMTS13Q76LX8 1427 aa27.73■■■□□ 2.03
PVT1-220ENST00000524165 C8orf37Q96NL8 207 aa27.72■■■□□ 2.03
PVT1-220ENST00000524165 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.71■■■□□ 2.03
PVT1-220ENST00000524165 LRRC59Q96AG4 307 aaKnown RBP27.71■■■□□ 2.03
PVT1-220ENST00000524165 DAPK1P53355 1430 aa27.7■■■□□ 2.03
PVT1-220ENST00000524165 NGLY1Q96IV0 654 aa27.7■■■□□ 2.02
PVT1-220ENST00000524165 PTPN23Q9H3S7 1636 aa27.67■■■□□ 2.02
PVT1-220ENST00000524165 KANK4Q5T7N3 995 aaPredicted RBP27.67■■■□□ 2.02
PVT1-220ENST00000524165 ANKRD30AQ9BXX3 1397 aa27.67■■■□□ 2.02
PVT1-220ENST00000524165 SETBP1Q9Y6X0 1596 aa27.66■■■□□ 2.02
PVT1-220ENST00000524165 TRPM2O94759 1503 aa27.66■■■□□ 2.02
PVT1-220ENST00000524165 PNPLA6Q8IY17 1366 aa27.64■■■□□ 2.02
PVT1-220ENST00000524165 VPS8Q8N3P4 1428 aa27.64■■■□□ 2.02
PVT1-220ENST00000524165 MST1RQ04912 1400 aa27.63■■■□□ 2.01
PVT1-220ENST00000524165 AMOTL2Q9Y2J4 779 aa27.62■■■□□ 2.01
PVT1-220ENST00000524165 EP400Q96L91 3159 aa27.61■■■□□ 2.01
PVT1-220ENST00000524165 PTPRUQ92729 1446 aa27.59■■■□□ 2.01
PVT1-220ENST00000524165 CCDC125Q86Z20 511 aa27.58■■■□□ 2.01
PVT1-220ENST00000524165 XRN1Q8IZH2 1706 aaKnown RBP27.56■■■□□ 2
PVT1-220ENST00000524165 CHIC2Q9UKJ5 165 aa27.56■■■□□ 2
PVT1-220ENST00000524165 UNC13BO14795 1591 aa27.54■■■□□ 2
PVT1-220ENST00000524165 TRPC5Q9UL62 973 aaPredicted RBP27.54■■■□□ 2
PVT1-220ENST00000524165 ADAMTS2O95450 1211 aa27.53■■■□□ 2
PVT1-220ENST00000524165 CHGAP10645 457 aaKnown RBP27.53■■■□□ 2
PVT1-220ENST00000524165 USP21Q9UK80 565 aa27.52■■■□□ 2
PVT1-220ENST00000524165 DDX17Q92841 729 aaKnown RBP27.5■■□□□ 1.99
PVT1-220ENST00000524165 ADGRL2O95490 1459 aa27.5■■□□□ 1.99
PVT1-220ENST00000524165 LAMC1P11047 1609 aa27.49■■□□□ 1.99
PVT1-220ENST00000524165 FNBP4Q8N3X1 1017 aaPredicted RBP27.48■■□□□ 1.99
PVT1-220ENST00000524165 ATRNO75882 1429 aa27.48■■□□□ 1.99
PVT1-220ENST00000524165 PTCH1Q13635 1447 aa27.47■■□□□ 1.99
PVT1-220ENST00000524165 NRXN3Q9Y4C0 1643 aa27.45■■□□□ 1.99
PVT1-220ENST00000524165 ADGRL3Q9HAR2 1447 aa27.45■■□□□ 1.98
PVT1-220ENST00000524165 ANKRD50Q9ULJ7 1429 aa27.44■■□□□ 1.98
PVT1-220ENST00000524165 E9PCH4 1651 aa27.44■■□□□ 1.98
PVT1-220ENST00000524165 NALCNQ8IZF0 1738 aa27.43■■□□□ 1.98
PVT1-220ENST00000524165 LRP5O75197 1615 aa27.41■■□□□ 1.98
PVT1-220ENST00000524165 SOS2Q07890 1332 aaPredicted RBP27.4■■□□□ 1.98
PVT1-220ENST00000524165 COL22A1Q8NFW1 1626 aaPredicted RBP27.39■■□□□ 1.98
PVT1-220ENST00000524165 C1orf167Q5SNV9 1468 aa27.38■■□□□ 1.97
PVT1-220ENST00000524165 IQGAP3Q86VI3 1631 aa27.37■■□□□ 1.97
PVT1-220ENST00000524165 METP08581 1390 aa27.35■■□□□ 1.97
PVT1-220ENST00000524165 BLMP54132 1417 aaPredicted RBP27.34■■□□□ 1.97
PVT1-220ENST00000524165 MARF1Q9Y4F3 1742 aaKnown RBP27.34■■□□□ 1.97
PVT1-220ENST00000524165 BCL9LQ86UU0 1499 aa27.32■■□□□ 1.96
PVT1-220ENST00000524165 GJD4Q96KN9 370 aaPredicted RBP27.29■■□□□ 1.96
PVT1-220ENST00000524165 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.28■■□□□ 1.96
PVT1-220ENST00000524165 MYOM2P54296 1465 aa27.28■■□□□ 1.96
PVT1-220ENST00000524165 ORAI2Q96SN7 254 aa27.26■■□□□ 1.95
PVT1-220ENST00000524165 SPHKAPQ2M3C7 1700 aa27.25■■□□□ 1.95
PVT1-220ENST00000524165 APLP2Q06481 763 aa27.23■■□□□ 1.95
PVT1-220ENST00000524165 BRWD3Q6RI45 1802 aa27.22■■□□□ 1.95
PVT1-220ENST00000524165 DEFB132Q7Z7B7 95 aa27.21■■□□□ 1.95
PVT1-220ENST00000524165 GLI3P10071 1580 aa27.19■■□□□ 1.94
PVT1-220ENST00000524165 SF3B2Q13435 895 aaKnown RBP27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms