RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 TBX22Q9Y458 520 aa14.05□□□□□ -0.16
HDAC3-215ENST00000519474 HFM1A2PYH4 1435 aa14.05□□□□□ -0.16
HDAC3-215ENST00000519474 ZFYVE9O95405 1425 aa14.05□□□□□ -0.16
HDAC3-215ENST00000519474 RIMS2Q9UQ26 1411 aa14.05□□□□□ -0.16
HDAC3-215ENST00000519474 LRRC7Q96NW7 1537 aa14.05□□□□□ -0.16
HDAC3-215ENST00000519474 PIP4K2BP78356 416 aa14.04□□□□□ -0.16
HDAC3-215ENST00000519474 SLC4A1APQ9BWU0 796 aaKnown RBP14.04□□□□□ -0.16
HDAC3-215ENST00000519474 ADGRB3O60242 1522 aa14.04□□□□□ -0.16
HDAC3-215ENST00000519474 TMEM131LA2VDJ0 1609 aa14.04□□□□□ -0.16
HDAC3-215ENST00000519474 PROSER2Q86WR7 435 aaPredicted RBP14.03□□□□□ -0.16
HDAC3-215ENST00000519474 PLEKHG1Q9ULL1 1385 aa14.02□□□□□ -0.17
HDAC3-215ENST00000519474 PPP1R15AO75807 674 aaPredicted RBP14.02□□□□□ -0.17
HDAC3-215ENST00000519474 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.17
HDAC3-215ENST00000519474 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
HDAC3-215ENST00000519474 MYO5BQ9ULV0 1848 aa14□□□□□ -0.17
HDAC3-215ENST00000519474 FOXD1Q16676 465 aa14□□□□□ -0.17
HDAC3-215ENST00000519474 HSPA1LP34931 641 aa13.99□□□□□ -0.17
HDAC3-215ENST00000519474 ZNF326Q5BKZ1 582 aaKnown RBP13.99□□□□□ -0.17
HDAC3-215ENST00000519474 MPHOSPH9Q99550 1183 aa13.99□□□□□ -0.17
HDAC3-215ENST00000519474 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
HDAC3-215ENST00000519474 ADAMTS13Q76LX8 1427 aa13.97□□□□□ -0.17
HDAC3-215ENST00000519474 ALKQ9UM73 1620 aa13.97□□□□□ -0.17
HDAC3-215ENST00000519474 TMEM94Q12767 1356 aa13.96□□□□□ -0.17
HDAC3-215ENST00000519474 AMOTL2Q9Y2J4 779 aa13.95□□□□□ -0.18
HDAC3-215ENST00000519474 SETD5Q9C0A6 1442 aa13.93□□□□□ -0.18
HDAC3-215ENST00000519474 SPHKAPQ2M3C7 1700 aa13.93□□□□□ -0.18
HDAC3-215ENST00000519474 XIRP1Q702N8 1843 aaKnown RBP13.92□□□□□ -0.18
HDAC3-215ENST00000519474 VGFO15240 615 aaPredicted RBP13.92□□□□□ -0.18
HDAC3-215ENST00000519474 RPGRIP1LQ68CZ1 1315 aa13.91□□□□□ -0.18
HDAC3-215ENST00000519474 ACIN1Q9UKV3 1341 aaKnown RBP13.91□□□□□ -0.18
HDAC3-215ENST00000519474 CHD2O14647 1828 aaKnown RBP13.91□□□□□ -0.18
HDAC3-215ENST00000519474 PIK3R4Q99570 1358 aa13.91□□□□□ -0.18
HDAC3-215ENST00000519474 PTPRUQ92729 1446 aa13.9□□□□□ -0.18
HDAC3-215ENST00000519474 CLTCL1P53675 1640 aa13.9□□□□□ -0.18
HDAC3-215ENST00000519474 SLAIN2Q9P270 581 aa13.9□□□□□ -0.18
HDAC3-215ENST00000519474 TRPM2O94759 1503 aa13.9□□□□□ -0.19
HDAC3-215ENST00000519474 METP08581 1390 aa13.89□□□□□ -0.19
HDAC3-215ENST00000519474 DISP3Q9P2K9 1392 aa13.89□□□□□ -0.19
HDAC3-215ENST00000519474 RGL3Q3MIN7 710 aa13.89□□□□□ -0.19
HDAC3-215ENST00000519474 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
HDAC3-215ENST00000519474 C19orf44Q9H6X5 657 aa13.89□□□□□ -0.19
HDAC3-215ENST00000519474 FAM135BQ49AJ0 1406 aa13.89□□□□□ -0.19
HDAC3-215ENST00000519474 HRCP23327 699 aa13.88□□□□□ -0.19
HDAC3-215ENST00000519474 ILDR2Q71H61 639 aa13.88□□□□□ -0.19
HDAC3-215ENST00000519474 NKTRP30414 1462 aaKnown RBP13.87□□□□□ -0.19
HDAC3-215ENST00000519474 NCOA3Q9Y6Q9 1424 aa13.87□□□□□ -0.19
HDAC3-215ENST00000519474 NWD1Q149M9 1564 aa13.87□□□□□ -0.19
HDAC3-215ENST00000519474 MSH6P52701 1360 aa13.86□□□□□ -0.19
HDAC3-215ENST00000519474 RAB3GAP2Q9H2M9 1393 aa13.86□□□□□ -0.19
HDAC3-215ENST00000519474 NEXMIFQ5QGS0 1516 aa13.85□□□□□ -0.19
HDAC3-215ENST00000519474 KIF1BO60333 1816 aa13.85□□□□□ -0.19
HDAC3-215ENST00000519474 C14orf37Q86TY3 774 aa13.84□□□□□ -0.19
HDAC3-215ENST00000519474 ADGRF5Q8IZF2 1346 aa13.84□□□□□ -0.19
HDAC3-215ENST00000519474 SETBP1Q9Y6X0 1596 aa13.83□□□□□ -0.19
HDAC3-215ENST00000519474 NRXN3Q9Y4C0 1643 aa13.83□□□□□ -0.2
HDAC3-215ENST00000519474 DIP2AQ14689 1571 aa13.83□□□□□ -0.2
HDAC3-215ENST00000519474 CCDC144AA2RUR9 1427 aa13.82□□□□□ -0.2
HDAC3-215ENST00000519474 ATF3P18847 181 aa13.82□□□□□ -0.2
HDAC3-215ENST00000519474 CADPS2Q86UW7 1296 aa13.82□□□□□ -0.2
HDAC3-215ENST00000519474 SPATA31E1Q6ZUB1 1445 aa13.81□□□□□ -0.2
HDAC3-215ENST00000519474 TMEM132EQ6IEE7 984 aa13.78□□□□□ -0.2
HDAC3-215ENST00000519474 ANKRD30BQ9BXX2 1392 aa13.78□□□□□ -0.2
HDAC3-215ENST00000519474 ROBO2Q9HCK4 1378 aa13.76□□□□□ -0.21
HDAC3-215ENST00000519474 BRINP3Q76B58 766 aa13.76□□□□□ -0.21
HDAC3-215ENST00000519474 C14orf93Q9H972 538 aaKnown RBP13.76□□□□□ -0.21
HDAC3-215ENST00000519474 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.76□□□□□ -0.21
HDAC3-215ENST00000519474 STK26Q9P289 416 aa13.75□□□□□ -0.21
HDAC3-215ENST00000519474 ROBO1Q9Y6N7 1651 aa13.75□□□□□ -0.21
HDAC3-215ENST00000519474 PPLO60437 1756 aa13.74□□□□□ -0.21
HDAC3-215ENST00000519474 XRN1Q8IZH2 1706 aaKnown RBP13.74□□□□□ -0.21
HDAC3-215ENST00000519474 CFAP70Q5T0N1 1121 aa13.74□□□□□ -0.21
HDAC3-215ENST00000519474 WAPLQ7Z5K2 1190 aa13.74□□□□□ -0.21
HDAC3-215ENST00000519474 RGS17Q9UGC6 210 aaPredicted RBP13.73□□□□□ -0.21
HDAC3-215ENST00000519474 KDM2AQ9Y2K7 1162 aa13.72□□□□□ -0.21
HDAC3-215ENST00000519474 ABCC11Q96J66 1382 aa13.71□□□□□ -0.21
HDAC3-215ENST00000519474 SETD1AO15047 1707 aaKnown RBP13.71□□□□□ -0.21
HDAC3-215ENST00000519474 SIRT1Q96EB6 747 aa13.71□□□□□ -0.21
HDAC3-215ENST00000519474 DCCP43146 1447 aa13.71□□□□□ -0.22
HDAC3-215ENST00000519474 MED1Q15648 1581 aaPredicted RBP13.71□□□□□ -0.22
HDAC3-215ENST00000519474 SOCS7O14512 581 aa13.7□□□□□ -0.22
HDAC3-215ENST00000519474 DCAF11Q8TEB1 546 aa13.7□□□□□ -0.22
HDAC3-215ENST00000519474 DDX17Q92841 729 aaKnown RBP13.7□□□□□ -0.22
HDAC3-215ENST00000519474 ORAI2Q96SN7 254 aa13.7□□□□□ -0.22
HDAC3-215ENST00000519474 MST1RQ04912 1400 aa13.7□□□□□ -0.22
HDAC3-215ENST00000519474 ADGRL3Q9HAR2 1447 aa13.7□□□□□ -0.22
HDAC3-215ENST00000519474 LRPPRCP42704 1394 aaKnown RBP13.7□□□□□ -0.22
HDAC3-215ENST00000519474 PHF23Q9BUL5 403 aaPredicted RBP13.69□□□□□ -0.22
HDAC3-215ENST00000519474 PIK3C2GO75747 1445 aa13.69□□□□□ -0.22
HDAC3-215ENST00000519474 PTCH1Q13635 1447 aa13.68□□□□□ -0.22
HDAC3-215ENST00000519474 PRAG1Q86YV5 1406 aa13.68□□□□□ -0.22
HDAC3-215ENST00000519474 STAC3Q96MF2 364 aa13.68□□□□□ -0.22
HDAC3-215ENST00000519474 JCADQ9P266 1359 aa13.68□□□□□ -0.22
HDAC3-215ENST00000519474 LRRC59Q96AG4 307 aaKnown RBP13.66□□□□□ -0.22
HDAC3-215ENST00000519474 IFT172Q9UG01 1749 aa13.66□□□□□ -0.22
HDAC3-215ENST00000519474 DHX57Q6P158 1386 aaKnown RBP13.66□□□□□ -0.22
HDAC3-215ENST00000519474 PLEKHH1Q9ULM0 1364 aa13.66□□□□□ -0.22
HDAC3-215ENST00000519474 C1orf167Q5SNV9 1468 aa13.66□□□□□ -0.22
HDAC3-215ENST00000519474 NRXN1Q9ULB1 1477 aa13.66□□□□□ -0.22
HDAC3-215ENST00000519474 YTHDC2Q9H6S0 1430 aaKnown RBP13.65□□□□□ -0.22
HDAC3-215ENST00000519474 PHLPP1O60346 1717 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms