RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 GALNT6Q8NCL4 622 aa3.57□□□□□ -1.84
RNU6-539P-201ENST00000516665 JPH4Q96JJ6 628 aa3.57□□□□□ -1.84
RNU6-539P-201ENST00000516665 APLP1P51693 650 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 NLRP6P59044 892 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 PLA2G2CQ5R387 149 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 LMOD2Q6P5Q4 547 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 PLPP6Q8IY26 295 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 CYP4X1Q8N118 509 aa3.56□□□□□ -1.84
RNU6-539P-201ENST00000516665 VSIG8P0DPA2 414 aa3.54□□□□□ -1.84
RNU6-539P-201ENST00000516665 ZPR1O75312 459 aa3.53□□□□□ -1.84
RNU6-539P-201ENST00000516665 SLURP2P0DP57 97 aa3.53□□□□□ -1.84
RNU6-539P-201ENST00000516665 FURINP09958 794 aa3.52□□□□□ -1.85
RNU6-539P-201ENST00000516665 SAMD7Q7Z3H4 446 aa3.52□□□□□ -1.85
RNU6-539P-201ENST00000516665 UPF1Q92900 1129 aaKnown RBP eCLIP3.52□□□□□ -1.85
RNU6-539P-201ENST00000516665 S1PR4O95977 384 aa3.51□□□□□ -1.85
RNU6-539P-201ENST00000516665 FOXK1P85037 733 aa3.51□□□□□ -1.85
RNU6-539P-201ENST00000516665 TLL1O43897 1013 aa3.5□□□□□ -1.85
RNU6-539P-201ENST00000516665 ONECUT3O60422 494 aaPredicted RBP3.5□□□□□ -1.85
RNU6-539P-201ENST00000516665 SMPD1P17405 629 aa3.5□□□□□ -1.85
RNU6-539P-201ENST00000516665 BAG6P46379 1132 aa3.5□□□□□ -1.85
RNU6-539P-201ENST00000516665 OXER1Q8TDS5 423 aa3.5□□□□□ -1.85
RNU6-539P-201ENST00000516665 TTC24A2A3L6 582 aaPredicted RBP3.49□□□□□ -1.85
RNU6-539P-201ENST00000516665 ZNF385CQ66K41 422 aaPredicted RBP3.49□□□□□ -1.85
RNU6-539P-201ENST00000516665 TRIM6-TRIM34B2RNG4 842 aa3.48□□□□□ -1.85
RNU6-539P-201ENST00000516665 ITGB7P26010 798 aa3.48□□□□□ -1.85
RNU6-539P-201ENST00000516665 KRT76Q01546 638 aa3.48□□□□□ -1.85
RNU6-539P-201ENST00000516665 DCAF5Q96JK2 942 aa3.48□□□□□ -1.85
RNU6-539P-201ENST00000516665 DSG2Q14126 1118 aa3.47□□□□□ -1.85
RNU6-539P-201ENST00000516665 SVOPQ8N4V2 548 aa3.47□□□□□ -1.85
RNU6-539P-201ENST00000516665 BMP1P13497 986 aa3.46□□□□□ -1.86
RNU6-539P-201ENST00000516665 MARSP56192 900 aaKnown RBP3.46□□□□□ -1.86
RNU6-539P-201ENST00000516665 MFRPQ9BY79 579 aa3.46□□□□□ -1.86
RNU6-539P-201ENST00000516665 CIZ1Q9ULV3 898 aaPredicted RBP3.46□□□□□ -1.86
RNU6-539P-201ENST00000516665 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 RNF40O75150 1001 aa3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 YBX3P16989 372 aaKnown RBP eCLIP3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 ZMYM1Q5SVZ6 1142 aa3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 HPS1Q92902 700 aa3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 SCARF2Q96GP6 870 aaPredicted RBP3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 ZFP91Q96JP5 570 aaPredicted RBP3.45□□□□□ -1.86
RNU6-539P-201ENST00000516665 ARHGEF15O94989 841 aa3.44□□□□□ -1.86
RNU6-539P-201ENST00000516665 FZD5Q13467 585 aa3.44□□□□□ -1.86
RNU6-539P-201ENST00000516665 WHAMMQ8TF30 809 aa3.44□□□□□ -1.86
RNU6-539P-201ENST00000516665 J3QL48 77 aa3.43□□□□□ -1.86
RNU6-539P-201ENST00000516665 TRIM46Q7Z4K8 759 aa3.43□□□□□ -1.86
RNU6-539P-201ENST00000516665 KLHL34Q8N239 644 aa3.43□□□□□ -1.86
RNU6-539P-201ENST00000516665 CNTNAP3BQ96NU0 1288 aa3.43□□□□□ -1.86
RNU6-539P-201ENST00000516665 CNTNAP3Q9BZ76 1288 aa3.43□□□□□ -1.86
RNU6-539P-201ENST00000516665 PCDHGA10Q9Y5H3 936 aa3.42□□□□□ -1.86
RNU6-539P-201ENST00000516665 SCO2A0A1W2PP80 73 aa3.41□□□□□ -1.86
RNU6-539P-201ENST00000516665 SMAPO00193 183 aa3.41□□□□□ -1.86
RNU6-539P-201ENST00000516665 LCE4AQ5TA78 99 aa3.4□□□□□ -1.87
RNU6-539P-201ENST00000516665 BLOC1S3Q6QNY0 202 aa3.4□□□□□ -1.87
RNU6-539P-201ENST00000516665 EVI5O60447 810 aa3.39□□□□□ -1.87
RNU6-539P-201ENST00000516665 SOBPA7XYQ1 873 aa3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 FOXD4L6Q3SYB3 417 aaPredicted RBP3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 FOXD4L3Q6VB84 417 aaPredicted RBP3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 SNIP1Q8TAD8 396 aaKnown RBP3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 GPHNQ9NQX3 736 aaPredicted RBP3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 TSKSQ9UJT2 592 aa3.38□□□□□ -1.87
RNU6-539P-201ENST00000516665 RPIAP49247 311 aa3.36□□□□□ -1.87
RNU6-539P-201ENST00000516665 GPR161Q8N6U8 529 aaKnown RBP3.36□□□□□ -1.87
RNU6-539P-201ENST00000516665 PCDHB3Q9Y5E6 796 aa3.36□□□□□ -1.87
RNU6-539P-201ENST00000516665 C3orf80F5H4A9 247 aa3.35□□□□□ -1.87
RNU6-539P-201ENST00000516665 C6orf132Q5T0Z8 1188 aa3.35□□□□□ -1.87
RNU6-539P-201ENST00000516665 CCER1Q8TC90 406 aaPredicted RBP3.35□□□□□ -1.87
RNU6-539P-201ENST00000516665 PPP1R37O75864 691 aa3.34□□□□□ -1.87
RNU6-539P-201ENST00000516665 NBPF11Q86T75 865 aa3.34□□□□□ -1.87
RNU6-539P-201ENST00000516665 PACS2Q86VP3 889 aa3.34□□□□□ -1.87
RNU6-539P-201ENST00000516665 ZFP64Q9NPA5 681 aa3.34□□□□□ -1.87
RNU6-539P-201ENST00000516665 CD2BP2O95400 341 aaKnown RBP3.33□□□□□ -1.88
RNU6-539P-201ENST00000516665 TYW1BQ6NUM6 668 aa3.33□□□□□ -1.88
RNU6-539P-201ENST00000516665 FBXW7Q969H0 707 aa3.33□□□□□ -1.88
RNU6-539P-201ENST00000516665 ZFP42Q96MM3 310 aa3.33□□□□□ -1.88
RNU6-539P-201ENST00000516665 CNTNAP5Q8WYK1 1306 aa3.33□□□□□ -1.88
RNU6-539P-201ENST00000516665 PPFIA3O75145 1194 aa3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 ADH1BP00325 375 aa3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 RNFT1Q5M7Z0 435 aa3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 ARTNQ5T4W7 220 aa3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 RNF25Q96BH1 459 aaPredicted RBP3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 COL25A1Q9BXS0 654 aaPredicted RBP3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 SLC6A16Q9GZN6 736 aa3.32□□□□□ -1.88
RNU6-539P-201ENST00000516665 WNT7AO00755 349 aa3.31□□□□□ -1.88
RNU6-539P-201ENST00000516665 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
RNU6-539P-201ENST00000516665 MRGPRX2Q96LB1 330 aa3.31□□□□□ -1.88
RNU6-539P-201ENST00000516665 SEMA6BQ9H3T3 888 aa3.31□□□□□ -1.88
RNU6-539P-201ENST00000516665 RIOK3O14730 519 aaKnown RBP3.3□□□□□ -1.88
RNU6-539P-201ENST00000516665 KRBA1A5PL33 1030 aa3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 PHF20L1A8MW92 1017 aa3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 VGFO15240 615 aaPredicted RBP3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 TXKP42681 527 aa3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 MCTP1Q6DN14 999 aa3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 BCL11BQ9C0K0 894 aaPredicted RBP3.29□□□□□ -1.88
RNU6-539P-201ENST00000516665 CAPN5O15484 640 aaPredicted RBP3.27□□□□□ -1.89
RNU6-539P-201ENST00000516665 KRTAP1-1Q07627 177 aa3.27□□□□□ -1.89
RNU6-539P-201ENST00000516665 FAM198AQ9UFP1 575 aa3.27□□□□□ -1.89
RNU6-539P-201ENST00000516665 FCF1Q9Y324 198 aaKnown RBP3.27□□□□□ -1.89
RNU6-539P-201ENST00000516665 PHF14O94880 888 aa3.26□□□□□ -1.89
RNU6-539P-201ENST00000516665 LYPD4Q6UWN0 246 aa3.26□□□□□ -1.89
RNU6-539P-201ENST00000516665 NECTIN2Q92692 538 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms