RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 SLC26A8Q96RN1 970 aa49.93■■■■■ 5.58
CBX4-203ENST00000494546 SENP3Q9H4L4 574 aaPredicted RBP49.92■■■■■ 5.58
CBX4-203ENST00000494546 LRRC7Q96NW7 1537 aa49.9■■■■■ 5.58
CBX4-203ENST00000494546 SPHKAPQ2M3C7 1700 aa49.89■■■■■ 5.58
CBX4-203ENST00000494546 TOM1O60784 492 aa49.84■■■■■ 5.57
CBX4-203ENST00000494546 ABCF1Q8NE71 845 aaKnown RBP eCLIP49.84■■■■■ 5.57
CBX4-203ENST00000494546 PLEKHG1Q9ULL1 1385 aa49.82■■■■■ 5.57
CBX4-203ENST00000494546 NUTM2DQ5VT03 806 aaPredicted RBP49.82■■■■■ 5.57
CBX4-203ENST00000494546 SCAF1Q9H7N4 1312 aaKnown RBP49.8■■■■■ 5.56
CBX4-203ENST00000494546 PIP4K2BP78356 416 aa49.78■■■■■ 5.56
CBX4-203ENST00000494546 SLC4A1APQ9BWU0 796 aaKnown RBP49.78■■■■■ 5.56
CBX4-203ENST00000494546 KCNA6P17658 529 aa49.75■■■■■ 5.55
CBX4-203ENST00000494546 TRPM2O94759 1503 aa49.72■■■■■ 5.55
CBX4-203ENST00000494546 CLTCL1P53675 1640 aa49.68■■■■■ 5.54
CBX4-203ENST00000494546 ZNF326Q5BKZ1 582 aaKnown RBP49.68■■■■■ 5.54
CBX4-203ENST00000494546 ALKQ9UM73 1620 aa49.61■■■■■ 5.53
CBX4-203ENST00000494546 PROSER2Q86WR7 435 aaPredicted RBP49.61■■■■■ 5.53
CBX4-203ENST00000494546 TBX22Q9Y458 520 aa49.61■■■■■ 5.53
CBX4-203ENST00000494546 TMEM94Q12767 1356 aa49.59■■■■■ 5.53
CBX4-203ENST00000494546 NWD1Q149M9 1564 aa49.58■■■■■ 5.53
CBX4-203ENST00000494546 ADAMTS13Q76LX8 1427 aa49.58■■■■■ 5.53
CBX4-203ENST00000494546 XIRP1Q702N8 1843 aaKnown RBP49.57■■■■■ 5.53
CBX4-203ENST00000494546 FOXD1Q16676 465 aa49.55■■■■■ 5.52
CBX4-203ENST00000494546 RBM33Q96EV2 1170 aaKnown RBP49.55■■■■■ 5.52
CBX4-203ENST00000494546 NKTRP30414 1462 aaKnown RBP49.55■■■■■ 5.52
CBX4-203ENST00000494546 SETD5Q9C0A6 1442 aa49.52■■■■■ 5.52
CBX4-203ENST00000494546 KIF1BO60333 1816 aa49.5■■■■■ 5.52
CBX4-203ENST00000494546 DIP2AQ14689 1571 aa49.5■■■■■ 5.52
CBX4-203ENST00000494546 HSPA1LP34931 641 aa49.5■■■■■ 5.51
CBX4-203ENST00000494546 MPHOSPH9Q99550 1183 aa49.49■■■■■ 5.51
CBX4-203ENST00000494546 CHD2O14647 1828 aaKnown RBP49.48■■■■■ 5.51
CBX4-203ENST00000494546 NEXMIFQ5QGS0 1516 aa49.43■■■■■ 5.5
CBX4-203ENST00000494546 PIK3R4Q99570 1358 aa49.41■■■■■ 5.5
CBX4-203ENST00000494546 ACIN1Q9UKV3 1341 aaKnown RBP49.39■■■■■ 5.5
CBX4-203ENST00000494546 SETBP1Q9Y6X0 1596 aa49.37■■■■■ 5.49
CBX4-203ENST00000494546 NRXN3Q9Y4C0 1643 aa49.36■■■■■ 5.49
CBX4-203ENST00000494546 RAB3GAP2Q9H2M9 1393 aa49.35■■■■■ 5.49
CBX4-203ENST00000494546 MSH6P52701 1360 aa49.32■■■■■ 5.49
CBX4-203ENST00000494546 CCDC144AA2RUR9 1427 aa49.32■■■■■ 5.49
CBX4-203ENST00000494546 DISP3Q9P2K9 1392 aa49.31■■■■■ 5.48
CBX4-203ENST00000494546 AMOTL2Q9Y2J4 779 aa49.31■■■■■ 5.48
CBX4-203ENST00000494546 PTPRUQ92729 1446 aa49.29■■■■■ 5.48
CBX4-203ENST00000494546 VGFO15240 615 aaPredicted RBP49.27■■■■■ 5.48
CBX4-203ENST00000494546 RPGRIP1LQ68CZ1 1315 aa49.27■■■■■ 5.48
CBX4-203ENST00000494546 C14orf37Q86TY3 774 aa49.25■■■■■ 5.47
CBX4-203ENST00000494546 METP08581 1390 aa49.23■■■■■ 5.47
CBX4-203ENST00000494546 NCOA3Q9Y6Q9 1424 aa49.19■■■■■ 5.47
CBX4-203ENST00000494546 FAM135BQ49AJ0 1406 aa49.17■■■■■ 5.46
CBX4-203ENST00000494546 RGL3Q3MIN7 710 aa49.17■■■■■ 5.46
CBX4-203ENST00000494546 PPLO60437 1756 aa49.13■■■■■ 5.46
CBX4-203ENST00000494546 XRN1Q8IZH2 1706 aaKnown RBP49.13■■■■■ 5.46
CBX4-203ENST00000494546 SPATA31E1Q6ZUB1 1445 aa49.11■■■■■ 5.45
CBX4-203ENST00000494546 SLAIN2Q9P270 581 aa49.11■■■■■ 5.45
CBX4-203ENST00000494546 C19orf44Q9H6X5 657 aa49.08■■■■■ 5.45
CBX4-203ENST00000494546 ROBO1Q9Y6N7 1651 aa49.07■■■■■ 5.45
CBX4-203ENST00000494546 ATF3P18847 181 aa49.03■■■■■ 5.44
CBX4-203ENST00000494546 SIPA1L2Q9P2F8 1722 aaPredicted RBP49.01■■■■■ 5.44
CBX4-203ENST00000494546 CADPS2Q86UW7 1296 aa49.01■■■■■ 5.44
CBX4-203ENST00000494546 ADGRF5Q8IZF2 1346 aa49■■■■■ 5.43
CBX4-203ENST00000494546 HRCP23327 699 aa48.98■■■■■ 5.43
CBX4-203ENST00000494546 SETD1AO15047 1707 aaKnown RBP48.97■■■■■ 5.43
CBX4-203ENST00000494546 ANKRD30BQ9BXX2 1392 aa48.97■■■■■ 5.43
CBX4-203ENST00000494546 MED1Q15648 1581 aaPredicted RBP48.94■■■■■ 5.43
CBX4-203ENST00000494546 IFT172Q9UG01 1749 aa48.9■■■■■ 5.42
CBX4-203ENST00000494546 DCCP43146 1447 aa48.86■■■■■ 5.41
CBX4-203ENST00000494546 ILDR2Q71H61 639 aa48.86■■■■■ 5.41
CBX4-203ENST00000494546 PTCH1Q13635 1447 aa48.84■■■■■ 5.41
CBX4-203ENST00000494546 ROBO2Q9HCK4 1378 aa48.84■■■■■ 5.41
CBX4-203ENST00000494546 ADGRL3Q9HAR2 1447 aa48.83■■■■■ 5.41
CBX4-203ENST00000494546 PIK3C2GO75747 1445 aa48.78■■■■■ 5.4
CBX4-203ENST00000494546 PHLPP1O60346 1717 aa48.77■■■■■ 5.4
CBX4-203ENST00000494546 PRAG1Q86YV5 1406 aa48.75■■■■■ 5.4
CBX4-203ENST00000494546 NALCNQ8IZF0 1738 aa48.75■■■■■ 5.4
CBX4-203ENST00000494546 PHF23Q9BUL5 403 aaPredicted RBP48.72■■■■■ 5.39
CBX4-203ENST00000494546 MST1RQ04912 1400 aa48.72■■■■■ 5.39
CBX4-203ENST00000494546 BRINP3Q76B58 766 aa48.71■■■■■ 5.39
CBX4-203ENST00000494546 STK26Q9P289 416 aa48.71■■■■■ 5.39
CBX4-203ENST00000494546 TMEM132EQ6IEE7 984 aa48.7■■■■■ 5.39
CBX4-203ENST00000494546 MYOM2P54296 1465 aa48.67■■■■■ 5.38
CBX4-203ENST00000494546 LRPPRCP42704 1394 aaKnown RBP48.64■■■■■ 5.38
CBX4-203ENST00000494546 ASXL1Q8IXJ9 1541 aa48.64■■■■■ 5.38
CBX4-203ENST00000494546 NRXN1Q9ULB1 1477 aa48.63■■■■■ 5.38
CBX4-203ENST00000494546 COL16A1Q07092 1604 aaPredicted RBP48.62■■■■■ 5.37
CBX4-203ENST00000494546 C14orf93Q9H972 538 aaKnown RBP48.62■■■■■ 5.37
CBX4-203ENST00000494546 AHDC1Q5TGY3 1603 aaPredicted RBP48.61■■■■■ 5.37
CBX4-203ENST00000494546 JCADQ9P266 1359 aa48.6■■■■■ 5.37
CBX4-203ENST00000494546 CFAP70Q5T0N1 1121 aa48.59■■■■■ 5.37
CBX4-203ENST00000494546 TECPR2O15040 1411 aa48.58■■■■■ 5.37
CBX4-203ENST00000494546 ABCC11Q96J66 1382 aa48.57■■■■■ 5.37
CBX4-203ENST00000494546 WAPLQ7Z5K2 1190 aa48.55■■■■■ 5.36
CBX4-203ENST00000494546 YTHDC2Q9H6S0 1430 aaKnown RBP48.55■■■■■ 5.36
CBX4-203ENST00000494546 KDM2AQ9Y2K7 1162 aa48.54■■■■■ 5.36
CBX4-203ENST00000494546 DCAF11Q8TEB1 546 aa48.53■■■■■ 5.36
CBX4-203ENST00000494546 C1orf167Q5SNV9 1468 aa48.52■■■■■ 5.36
CBX4-203ENST00000494546 LAMC1P11047 1609 aa48.5■■■■■ 5.36
CBX4-203ENST00000494546 KNDC1Q76NI1 1749 aa48.49■■■■■ 5.35
CBX4-203ENST00000494546 DHX57Q6P158 1386 aaKnown RBP48.47■■■■■ 5.35
CBX4-203ENST00000494546 PLEKHH1Q9ULM0 1364 aa48.47■■■■■ 5.35
CBX4-203ENST00000494546 DDX17Q92841 729 aaKnown RBP48.43■■■■■ 5.34
CBX4-203ENST00000494546 NHSL1Q5SYE7 1610 aa48.42■■■■■ 5.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms