RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 CPS1P31327 1500 aa17.87■□□□□ 0.45
MDC1-207ENST00000492462 TMEM131LA2VDJ0 1609 aa17.86■□□□□ 0.45
MDC1-207ENST00000492462 SENP3Q9H4L4 574 aaPredicted RBP17.84■□□□□ 0.45
MDC1-207ENST00000492462 HFM1A2PYH4 1435 aa17.83■□□□□ 0.45
MDC1-207ENST00000492462 CHGAP10645 457 aaKnown RBP17.82■□□□□ 0.44
MDC1-207ENST00000492462 ZFYVE9O95405 1425 aa17.81■□□□□ 0.44
MDC1-207ENST00000492462 SPHKAPQ2M3C7 1700 aa17.81■□□□□ 0.44
MDC1-207ENST00000492462 SLC26A8Q96RN1 970 aa17.8■□□□□ 0.44
MDC1-207ENST00000492462 LRRC7Q96NW7 1537 aa17.8■□□□□ 0.44
MDC1-207ENST00000492462 RIMS2Q9UQ26 1411 aa17.8■□□□□ 0.44
MDC1-207ENST00000492462 NUTM2DQ5VT03 806 aaPredicted RBP17.78■□□□□ 0.44
MDC1-207ENST00000492462 ALKQ9UM73 1620 aa17.77■□□□□ 0.44
MDC1-207ENST00000492462 TRIM52Q96A61 297 aa17.77■□□□□ 0.44
MDC1-207ENST00000492462 XIRP1Q702N8 1843 aaKnown RBP17.77■□□□□ 0.43
MDC1-207ENST00000492462 SRCAPQ6ZRS2 3230 aa17.76■□□□□ 0.43
MDC1-207ENST00000492462 BCANQ96GW7 911 aa17.75■□□□□ 0.43
MDC1-207ENST00000492462 CLTCL1P53675 1640 aa17.75■□□□□ 0.43
MDC1-207ENST00000492462 PPP1R15AO75807 674 aaPredicted RBP17.74■□□□□ 0.43
MDC1-207ENST00000492462 PLEKHG1Q9ULL1 1385 aa17.74■□□□□ 0.43
MDC1-207ENST00000492462 POTEAQ6S8J7 498 aa17.72■□□□□ 0.43
MDC1-207ENST00000492462 TRPM2O94759 1503 aa17.72■□□□□ 0.43
MDC1-207ENST00000492462 KCNA6P17658 529 aa17.71■□□□□ 0.43
MDC1-207ENST00000492462 RBM33Q96EV2 1170 aaKnown RBP17.7■□□□□ 0.42
MDC1-207ENST00000492462 SLC4A1APQ9BWU0 796 aaKnown RBP17.7■□□□□ 0.42
MDC1-207ENST00000492462 ADAMTS13Q76LX8 1427 aa17.7■□□□□ 0.42
MDC1-207ENST00000492462 NWD1Q149M9 1564 aa17.7■□□□□ 0.42
MDC1-207ENST00000492462 HDGFP51858 240 aaKnown RBP17.69■□□□□ 0.42
MDC1-207ENST00000492462 FOXD1Q16676 465 aa17.69■□□□□ 0.42
MDC1-207ENST00000492462 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.69■□□□□ 0.42
MDC1-207ENST00000492462 CHD2O14647 1828 aaKnown RBP17.69■□□□□ 0.42
MDC1-207ENST00000492462 SETD1AO15047 1707 aaKnown RBP17.68■□□□□ 0.42
MDC1-207ENST00000492462 TMEM94Q12767 1356 aa17.67■□□□□ 0.42
MDC1-207ENST00000492462 KIF1BO60333 1816 aa17.67■□□□□ 0.42
MDC1-207ENST00000492462 ZNF326Q5BKZ1 582 aaKnown RBP17.66■□□□□ 0.42
MDC1-207ENST00000492462 PROSER2Q86WR7 435 aaPredicted RBP17.66■□□□□ 0.42
MDC1-207ENST00000492462 TBX22Q9Y458 520 aa17.66■□□□□ 0.42
MDC1-207ENST00000492462 NRXN3Q9Y4C0 1643 aa17.65■□□□□ 0.42
MDC1-207ENST00000492462 NKTRP30414 1462 aaKnown RBP17.64■□□□□ 0.41
MDC1-207ENST00000492462 NEXMIFQ5QGS0 1516 aa17.64■□□□□ 0.41
MDC1-207ENST00000492462 SETD5Q9C0A6 1442 aa17.63■□□□□ 0.41
MDC1-207ENST00000492462 DIP2AQ14689 1571 aa17.62■□□□□ 0.41
MDC1-207ENST00000492462 MPHOSPH9Q99550 1183 aa17.62■□□□□ 0.41
MDC1-207ENST00000492462 PTPRUQ92729 1446 aa17.61■□□□□ 0.41
MDC1-207ENST00000492462 SETBP1Q9Y6X0 1596 aa17.6■□□□□ 0.41
MDC1-207ENST00000492462 RAB3GAP2Q9H2M9 1393 aa17.58■□□□□ 0.4
MDC1-207ENST00000492462 UPF1Q92900 1129 aaKnown RBP eCLIP17.57■□□□□ 0.4
MDC1-207ENST00000492462 METP08581 1390 aa17.56■□□□□ 0.4
MDC1-207ENST00000492462 PIK3R4Q99570 1358 aa17.56■□□□□ 0.4
MDC1-207ENST00000492462 AMOTL2Q9Y2J4 779 aa17.56■□□□□ 0.4
MDC1-207ENST00000492462 PPLO60437 1756 aa17.56■□□□□ 0.4
MDC1-207ENST00000492462 XRN1Q8IZH2 1706 aaKnown RBP17.55■□□□□ 0.4
MDC1-207ENST00000492462 MSH6P52701 1360 aa17.53■□□□□ 0.4
MDC1-207ENST00000492462 CCDC144AA2RUR9 1427 aa17.53■□□□□ 0.4
MDC1-207ENST00000492462 SPATA31E1Q6ZUB1 1445 aa17.52■□□□□ 0.4
MDC1-207ENST00000492462 ROBO1Q9Y6N7 1651 aa17.52■□□□□ 0.39
MDC1-207ENST00000492462 RGL3Q3MIN7 710 aa17.51■□□□□ 0.39
MDC1-207ENST00000492462 FAM135BQ49AJ0 1406 aa17.51■□□□□ 0.39
MDC1-207ENST00000492462 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.51■□□□□ 0.39
MDC1-207ENST00000492462 RPGRIP1LQ68CZ1 1315 aa17.5■□□□□ 0.39
MDC1-207ENST00000492462 VGFO15240 615 aaPredicted RBP17.5■□□□□ 0.39
MDC1-207ENST00000492462 C14orf37Q86TY3 774 aa17.5■□□□□ 0.39
MDC1-207ENST00000492462 IFT172Q9UG01 1749 aa17.49■□□□□ 0.39
MDC1-207ENST00000492462 NCOA3Q9Y6Q9 1424 aa17.48■□□□□ 0.39
MDC1-207ENST00000492462 SLAIN2Q9P270 581 aa17.48■□□□□ 0.39
MDC1-207ENST00000492462 ADGRF5Q8IZF2 1346 aa17.47■□□□□ 0.39
MDC1-207ENST00000492462 ACIN1Q9UKV3 1341 aaKnown RBP17.47■□□□□ 0.39
MDC1-207ENST00000492462 C19orf44Q9H6X5 657 aa17.46■□□□□ 0.39
MDC1-207ENST00000492462 NALCNQ8IZF0 1738 aa17.43■□□□□ 0.38
MDC1-207ENST00000492462 ROBO2Q9HCK4 1378 aa17.42■□□□□ 0.38
MDC1-207ENST00000492462 ATF3P18847 181 aa17.42■□□□□ 0.38
MDC1-207ENST00000492462 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
MDC1-207ENST00000492462 CADPS2Q86UW7 1296 aa17.41■□□□□ 0.38
MDC1-207ENST00000492462 PHLPP1O60346 1717 aa17.41■□□□□ 0.38
MDC1-207ENST00000492462 ADGRL3Q9HAR2 1447 aa17.4■□□□□ 0.38
MDC1-207ENST00000492462 HRCP23327 699 aa17.4■□□□□ 0.38
MDC1-207ENST00000492462 ASXL1Q8IXJ9 1541 aa17.4■□□□□ 0.38
MDC1-207ENST00000492462 PIK3C2GO75747 1445 aa17.38■□□□□ 0.37
MDC1-207ENST00000492462 PTCH1Q13635 1447 aa17.38■□□□□ 0.37
MDC1-207ENST00000492462 DCCP43146 1447 aa17.38■□□□□ 0.37
MDC1-207ENST00000492462 MST1RQ04912 1400 aa17.38■□□□□ 0.37
MDC1-207ENST00000492462 COL16A1Q07092 1604 aaPredicted RBP17.37■□□□□ 0.37
MDC1-207ENST00000492462 TMEM132EQ6IEE7 984 aa17.37■□□□□ 0.37
MDC1-207ENST00000492462 PRAG1Q86YV5 1406 aa17.37■□□□□ 0.37
MDC1-207ENST00000492462 BRINP3Q76B58 766 aa17.36■□□□□ 0.37
MDC1-207ENST00000492462 STK26Q9P289 416 aa17.35■□□□□ 0.37
MDC1-207ENST00000492462 AHDC1Q5TGY3 1603 aaPredicted RBP17.34■□□□□ 0.37
MDC1-207ENST00000492462 NRXN1Q9ULB1 1477 aa17.34■□□□□ 0.37
MDC1-207ENST00000492462 MYOM2P54296 1465 aa17.33■□□□□ 0.37
MDC1-207ENST00000492462 LRPPRCP42704 1394 aaKnown RBP17.32■□□□□ 0.36
MDC1-207ENST00000492462 CFAP70Q5T0N1 1121 aa17.32■□□□□ 0.36
MDC1-207ENST00000492462 PLEKHH1Q9ULM0 1364 aa17.31■□□□□ 0.36
MDC1-207ENST00000492462 WAPLQ7Z5K2 1190 aa17.31■□□□□ 0.36
MDC1-207ENST00000492462 C14orf93Q9H972 538 aaKnown RBP17.31■□□□□ 0.36
MDC1-207ENST00000492462 TECPR2O15040 1411 aa17.3■□□□□ 0.36
MDC1-207ENST00000492462 KNDC1Q76NI1 1749 aa17.3■□□□□ 0.36
MDC1-207ENST00000492462 NHSL1Q5SYE7 1610 aa17.3■□□□□ 0.36
MDC1-207ENST00000492462 DDX17Q92841 729 aaKnown RBP17.3■□□□□ 0.36
MDC1-207ENST00000492462 YTHDC2Q9H6S0 1430 aaKnown RBP17.3■□□□□ 0.36
MDC1-207ENST00000492462 ABCC11Q96J66 1382 aa17.29■□□□□ 0.36
MDC1-207ENST00000492462 JCADQ9P266 1359 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms