RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 PTPRKQ15262 1439 aa9.12□□□□□ -0.95
SF3A3-208ENST00000489537 ZFYVE16Q7Z3T8 1539 aa9.11□□□□□ -0.95
SF3A3-208ENST00000489537 ARID4BQ4LE39 1312 aaPredicted RBP9.11□□□□□ -0.95
SF3A3-208ENST00000489537 RIMS1Q86UR5 1692 aaKnown RBP9.11□□□□□ -0.95
SF3A3-208ENST00000489537 MLECQ14165 292 aa9.11□□□□□ -0.95
SF3A3-208ENST00000489537 NCOA1Q15788 1441 aa9.11□□□□□ -0.95
SF3A3-208ENST00000489537 CDC42BPBQ9Y5S2 1711 aa9.11□□□□□ -0.95
SF3A3-208ENST00000489537 TONSLQ96HA7 1378 aa9.11□□□□□ -0.95
SF3A3-208ENST00000489537 LMTK3Q96Q04 1460 aa9.1□□□□□ -0.95
SF3A3-208ENST00000489537 SLAIN1Q8ND83 568 aa9.1□□□□□ -0.95
SF3A3-208ENST00000489537 TRIM52Q96A61 297 aa9.1□□□□□ -0.95
SF3A3-208ENST00000489537 ZNF777Q9ULD5 760 aaPredicted RBP9.1□□□□□ -0.95
SF3A3-208ENST00000489537 TRAPPC8Q9Y2L5 1435 aa9.1□□□□□ -0.95
SF3A3-208ENST00000489537 CCDC141Q6ZP82 1450 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 MYO5CQ9NQX4 1742 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 POTEMA6NI47 508 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 HSPA2P54652 639 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 FAM163AQ96GL9 167 aaPredicted RBP9.09□□□□□ -0.95
SF3A3-208ENST00000489537 RRP7BPQ9NSQ0 103 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.09□□□□□ -0.958e-7■■■■□ 23.1
SF3A3-208ENST00000489537 CHIC2Q9UKJ5 165 aa9.09□□□□□ -0.95
SF3A3-208ENST00000489537 CFAP74Q9C0B2 1584 aa9.08□□□□□ -0.96
SF3A3-208ENST00000489537 C9orf84Q5VXU9 1444 aa9.08□□□□□ -0.96
SF3A3-208ENST00000489537 CEBPAP49715 358 aaPredicted RBP9.08□□□□□ -0.96
SF3A3-208ENST00000489537 DIEXFQ68CQ4 756 aaKnown RBP9.08□□□□□ -0.96
SF3A3-208ENST00000489537 POTEGQ6S5H5 508 aa9.08□□□□□ -0.96
SF3A3-208ENST00000489537 L3MBTL3Q96JM7 780 aaPredicted RBP9.08□□□□□ -0.96
SF3A3-208ENST00000489537 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.08□□□□□ -0.96
SF3A3-208ENST00000489537 ARHGAP5Q13017 1502 aa9.08□□□□□ -0.96
SF3A3-208ENST00000489537 PREX2Q70Z35 1606 aa9.08□□□□□ -0.96
SF3A3-208ENST00000489537 ADGBQ8N7X0 1667 aa9.07□□□□□ -0.96
SF3A3-208ENST00000489537 ANKRD50Q9ULJ7 1429 aa9.07□□□□□ -0.96
SF3A3-208ENST00000489537 CABP2Q9NPB3 220 aa9.07□□□□□ -0.96
SF3A3-208ENST00000489537 ATP10AO60312 1499 aa9.07□□□□□ -0.96
SF3A3-208ENST00000489537 KDM5CP41229 1560 aa9.07□□□□□ -0.96
SF3A3-208ENST00000489537 ABCA6Q8N139 1617 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 G3V3G9 751 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 C3orf67Q6ZVT6 689 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 MPHOSPH9Q99550 1183 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 MAGI2Q86UL8 1455 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 DIP2CQ9Y2E4 1556 aa9.06□□□□□ -0.96
SF3A3-208ENST00000489537 ABCC1P33527 1531 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 CDC42BPAQ5VT25 1732 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 CROCC2H7BZ55 1655 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 MAST1Q9Y2H9 1570 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 MBD5Q9P267 1494 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 RTEL1-TNFRSF6BF6WH68 1400 aa9.05□□□□□ -0.96
SF3A3-208ENST00000489537 ZNF644Q9H582 1327 aaPredicted RBP9.05□□□□□ -0.96
SF3A3-208ENST00000489537 SAMD9LQ8IVG5 1584 aa9.04□□□□□ -0.96
SF3A3-208ENST00000489537 PPP1R15AO75807 674 aaPredicted RBP9.04□□□□□ -0.96
SF3A3-208ENST00000489537 KIF15Q9NS87 1388 aa9.03□□□□□ -0.96
SF3A3-208ENST00000489537 HNRNPMP52272 730 aaKnown RBP eCLIP9.03□□□□□ -0.96
SF3A3-208ENST00000489537 FER1L4A9Z1Z3 1794 aa9.03□□□□□ -0.96
SF3A3-208ENST00000489537 KIDINS220Q9ULH0 1771 aa9.03□□□□□ -0.96
SF3A3-208ENST00000489537 ZNF518AQ6AHZ1 1483 aa9.02□□□□□ -0.96
SF3A3-208ENST00000489537 SNPHO15079 494 aa9.02□□□□□ -0.97
SF3A3-208ENST00000489537 NEUROD1Q13562 356 aa9.02□□□□□ -0.97
SF3A3-208ENST00000489537 PDCD7Q8N8D1 485 aaKnown RBP9.02□□□□□ -0.97
SF3A3-208ENST00000489537 PCDH10Q9P2E7 1040 aa9.02□□□□□ -0.97
SF3A3-208ENST00000489537 TAOK2Q9UL54 1235 aa9.02□□□□□ -0.97
SF3A3-208ENST00000489537 MLH3Q9UHC1 1453 aa9.02□□□□□ -0.97
SF3A3-208ENST00000489537 KDM5DQ9BY66 1539 aa9.01□□□□□ -0.97
SF3A3-208ENST00000489537 RIOK3O14730 519 aaKnown RBP9.01□□□□□ -0.97
SF3A3-208ENST00000489537 PLXNC1O60486 1568 aa9.01□□□□□ -0.97
SF3A3-208ENST00000489537 ERBINQ96RT1 1412 aa9.01□□□□□ -0.97
SF3A3-208ENST00000489537 SYCP2Q9BX26 1530 aa9□□□□□ -0.97
SF3A3-208ENST00000489537 DUOX2Q9NRD8 1548 aa9□□□□□ -0.97
SF3A3-208ENST00000489537 STAC3Q96MF2 364 aa9□□□□□ -0.97
SF3A3-208ENST00000489537 NUP155O75694 1391 aa8.99□□□□□ -0.97
SF3A3-208ENST00000489537 ANKRD30BQ9BXX2 1392 aa8.99□□□□□ -0.97
SF3A3-208ENST00000489537 PLSCR2Q9NRY7 297 aa8.99□□□□□ -0.97
SF3A3-208ENST00000489537 RPRD2Q5VT52 1461 aaKnown RBP8.98□□□□□ -0.97
SF3A3-208ENST00000489537 VGFO15240 615 aaPredicted RBP8.98□□□□□ -0.97
SF3A3-208ENST00000489537 SIN3AQ96ST3 1273 aa8.98□□□□□ -0.97
SF3A3-208ENST00000489537 STRCQ7RTU9 1775 aa8.98□□□□□ -0.97
SF3A3-208ENST00000489537 SPAG9O60271 1321 aaKnown RBP8.98□□□□□ -0.97
SF3A3-208ENST00000489537 REREQ9P2R6 1566 aa8.98□□□□□ -0.97
SF3A3-208ENST00000489537 AGLP35573 1532 aa8.97□□□□□ -0.97
SF3A3-208ENST00000489537 C3P01024 1663 aa8.97□□□□□ -0.97
SF3A3-208ENST00000489537 CENPBP07199 599 aaPredicted RBP8.96□□□□□ -0.98
SF3A3-208ENST00000489537 MYT1LQ9UL68 1186 aa8.96□□□□□ -0.98
SF3A3-208ENST00000489537 KANK1Q14678 1352 aa8.96□□□□□ -0.98
SF3A3-208ENST00000489537 PKD2Q13563 968 aa8.95□□□□□ -0.98
SF3A3-208ENST00000489537 PZPP20742 1482 aa8.95□□□□□ -0.98
SF3A3-208ENST00000489537 INO80Q9ULG1 1556 aaPredicted RBP8.95□□□□□ -0.98
SF3A3-208ENST00000489537 LCE2DQ5TA82 110 aaPredicted RBP8.94□□□□□ -0.98
SF3A3-208ENST00000489537 EFCAB3Q8N7B9 438 aa8.94□□□□□ -0.98
SF3A3-208ENST00000489537 EIF4G2P78344 907 aaKnown RBP eCLIP8.93□□□□□ -0.98
SF3A3-208ENST00000489537 FBXO41Q8TF61 875 aa8.93□□□□□ -0.98
SF3A3-208ENST00000489537 BOLA1Q9Y3E2 137 aa8.93□□□□□ -0.98
SF3A3-208ENST00000489537 ATP7AQ04656 1500 aa8.93□□□□□ -0.98
SF3A3-208ENST00000489537 PREX1Q8TCU6 1659 aa8.93□□□□□ -0.98
SF3A3-208ENST00000489537 UNC13BO14795 1591 aa8.92□□□□□ -0.98
SF3A3-208ENST00000489537 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.92□□□□□ -0.98
SF3A3-208ENST00000489537 ST18O60284 1047 aa8.92□□□□□ -0.98
SF3A3-208ENST00000489537 ZFP91Q96JP5 570 aaPredicted RBP8.92□□□□□ -0.98
SF3A3-208ENST00000489537 TMEM121BQ9BXQ6 578 aaPredicted RBP8.92□□□□□ -0.98
SF3A3-208ENST00000489537 FAM135AQ9P2D6 1515 aa8.91□□□□□ -0.98
SF3A3-208ENST00000489537 A2MP01023 1474 aa8.91□□□□□ -0.98
SF3A3-208ENST00000489537 SOX12O15370 315 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms