RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 SLC26A8Q96RN1 970 aa13.61□□□□□ -0.23
HDAC6-232ENST00000489053 RIMS2Q9UQ26 1411 aa13.61□□□□□ -0.23
HDAC6-232ENST00000489053 KDM5AP29375 1690 aaKnown RBP13.6□□□□□ -0.23
HDAC6-232ENST00000489053 NUTM2DQ5VT03 806 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-232ENST00000489053 E9PCH4 1651 aa13.58□□□□□ -0.24
HDAC6-232ENST00000489053 ACIN1Q9UKV3 1341 aaKnown RBP13.58□□□□□ -0.24
HDAC6-232ENST00000489053 PLEKHG1Q9ULL1 1385 aa13.57□□□□□ -0.24
HDAC6-232ENST00000489053 KCNA6P17658 529 aa13.56□□□□□ -0.24
HDAC6-232ENST00000489053 PROSER2Q86WR7 435 aaPredicted RBP13.56□□□□□ -0.24
HDAC6-232ENST00000489053 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
HDAC6-232ENST00000489053 ZFYVE9O95405 1425 aa13.54□□□□□ -0.24
HDAC6-232ENST00000489053 LRRC7Q96NW7 1537 aa13.54□□□□□ -0.24
HDAC6-232ENST00000489053 TMEM131LA2VDJ0 1609 aa13.53□□□□□ -0.24
HDAC6-232ENST00000489053 SPHKAPQ2M3C7 1700 aa13.51□□□□□ -0.25
HDAC6-232ENST00000489053 TMEM94Q12767 1356 aa13.51□□□□□ -0.25
HDAC6-232ENST00000489053 TBX22Q9Y458 520 aa13.51□□□□□ -0.25
HDAC6-232ENST00000489053 TRPM2O94759 1503 aa13.5□□□□□ -0.25
HDAC6-232ENST00000489053 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
HDAC6-232ENST00000489053 NKTRP30414 1462 aaKnown RBP13.49□□□□□ -0.25
HDAC6-232ENST00000489053 MSH6P52701 1360 aa13.49□□□□□ -0.25
HDAC6-232ENST00000489053 MPHOSPH9Q99550 1183 aa13.49□□□□□ -0.25
HDAC6-232ENST00000489053 DISP3Q9P2K9 1392 aa13.48□□□□□ -0.25
HDAC6-232ENST00000489053 VGFO15240 615 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-232ENST00000489053 HSPA1LP34931 641 aa13.48□□□□□ -0.25
HDAC6-232ENST00000489053 FOXD1Q16676 465 aa13.48□□□□□ -0.25
HDAC6-232ENST00000489053 RBM33Q96EV2 1170 aaKnown RBP13.48□□□□□ -0.25
HDAC6-232ENST00000489053 CCDC144AA2RUR9 1427 aa13.47□□□□□ -0.25
HDAC6-232ENST00000489053 PIK3R4Q99570 1358 aa13.46□□□□□ -0.25
HDAC6-232ENST00000489053 DIP2AQ14689 1571 aa13.45□□□□□ -0.26
HDAC6-232ENST00000489053 RPGRIP1LQ68CZ1 1315 aa13.45□□□□□ -0.26
HDAC6-232ENST00000489053 AMOTL2Q9Y2J4 779 aa13.45□□□□□ -0.26
HDAC6-232ENST00000489053 MYO5BQ9ULV0 1848 aa13.45□□□□□ -0.26
HDAC6-232ENST00000489053 CLTCL1P53675 1640 aa13.45□□□□□ -0.26
HDAC6-232ENST00000489053 ATF3P18847 181 aa13.44□□□□□ -0.26
HDAC6-232ENST00000489053 STRCP1A6NGW2 1772 aa13.44□□□□□ -0.26
HDAC6-232ENST00000489053 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
HDAC6-232ENST00000489053 RGL3Q3MIN7 710 aa13.43□□□□□ -0.26
HDAC6-232ENST00000489053 ADAMTS13Q76LX8 1427 aa13.43□□□□□ -0.26
HDAC6-232ENST00000489053 NWD1Q149M9 1564 aa13.42□□□□□ -0.26
HDAC6-232ENST00000489053 KIF1BO60333 1816 aa13.41□□□□□ -0.26
HDAC6-232ENST00000489053 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.26
HDAC6-232ENST00000489053 PHF23Q9BUL5 403 aaPredicted RBP13.4□□□□□ -0.26
HDAC6-232ENST00000489053 SLAIN2Q9P270 581 aa13.4□□□□□ -0.26
HDAC6-232ENST00000489053 C19orf44Q9H6X5 657 aa13.39□□□□□ -0.27
HDAC6-232ENST00000489053 NEXMIFQ5QGS0 1516 aa13.39□□□□□ -0.27
HDAC6-232ENST00000489053 NCOA3Q9Y6Q9 1424 aa13.39□□□□□ -0.27
HDAC6-232ENST00000489053 SETBP1Q9Y6X0 1596 aa13.38□□□□□ -0.27
HDAC6-232ENST00000489053 ANKRD30BQ9BXX2 1392 aa13.37□□□□□ -0.27
HDAC6-232ENST00000489053 FAM135BQ49AJ0 1406 aa13.37□□□□□ -0.27
HDAC6-232ENST00000489053 METP08581 1390 aa13.36□□□□□ -0.27
HDAC6-232ENST00000489053 CHD2O14647 1828 aaKnown RBP13.35□□□□□ -0.27
HDAC6-232ENST00000489053 PTPRUQ92729 1446 aa13.34□□□□□ -0.27
HDAC6-232ENST00000489053 HRCP23327 699 aa13.34□□□□□ -0.27
HDAC6-232ENST00000489053 ALKQ9UM73 1620 aa13.33□□□□□ -0.28
HDAC6-232ENST00000489053 STK26Q9P289 416 aa13.32□□□□□ -0.28
HDAC6-232ENST00000489053 XIRP1Q702N8 1843 aaKnown RBP13.32□□□□□ -0.28
HDAC6-232ENST00000489053 NRXN3Q9Y4C0 1643 aa13.31□□□□□ -0.28
HDAC6-232ENST00000489053 SPATA31E1Q6ZUB1 1445 aa13.31□□□□□ -0.28
HDAC6-232ENST00000489053 ADGRF5Q8IZF2 1346 aa13.31□□□□□ -0.28
HDAC6-232ENST00000489053 DCCP43146 1447 aa13.3□□□□□ -0.28
HDAC6-232ENST00000489053 ROBO1Q9Y6N7 1651 aa13.3□□□□□ -0.28
HDAC6-232ENST00000489053 PTCH1Q13635 1447 aa13.3□□□□□ -0.28
HDAC6-232ENST00000489053 ADGRL3Q9HAR2 1447 aa13.3□□□□□ -0.28
HDAC6-232ENST00000489053 XRN1Q8IZH2 1706 aaKnown RBP13.28□□□□□ -0.28
HDAC6-232ENST00000489053 MED1Q15648 1581 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-232ENST00000489053 KDM2AQ9Y2K7 1162 aa13.27□□□□□ -0.29
HDAC6-232ENST00000489053 ROBO2Q9HCK4 1378 aa13.27□□□□□ -0.29
HDAC6-232ENST00000489053 PPLO60437 1756 aa13.27□□□□□ -0.29
HDAC6-232ENST00000489053 MEX3CQ5U5Q3 659 aaKnown RBP13.26□□□□□ -0.29
HDAC6-232ENST00000489053 TMEM132EQ6IEE7 984 aa13.26□□□□□ -0.29
HDAC6-232ENST00000489053 DCAF11Q8TEB1 546 aa13.26□□□□□ -0.29
HDAC6-232ENST00000489053 JCADQ9P266 1359 aa13.26□□□□□ -0.29
HDAC6-232ENST00000489053 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-232ENST00000489053 PIK3C2GO75747 1445 aa13.25□□□□□ -0.29
HDAC6-232ENST00000489053 DHX57Q6P158 1386 aaKnown RBP13.25□□□□□ -0.29
HDAC6-232ENST00000489053 BRINP3Q76B58 766 aa13.25□□□□□ -0.29
HDAC6-232ENST00000489053 LRPPRCP42704 1394 aaKnown RBP13.24□□□□□ -0.29
HDAC6-232ENST00000489053 ILDR2Q71H61 639 aa13.24□□□□□ -0.29
HDAC6-232ENST00000489053 STAC3Q96MF2 364 aa13.24□□□□□ -0.29
HDAC6-232ENST00000489053 MYOM2P54296 1465 aa13.23□□□□□ -0.29
HDAC6-232ENST00000489053 C14orf93Q9H972 538 aaKnown RBP13.23□□□□□ -0.29
HDAC6-232ENST00000489053 POGKQ9P215 609 aa13.23□□□□□ -0.29
HDAC6-232ENST00000489053 MST1RQ04912 1400 aa13.22□□□□□ -0.29
HDAC6-232ENST00000489053 PHLPP1O60346 1717 aa13.22□□□□□ -0.29
HDAC6-232ENST00000489053 CFAP70Q5T0N1 1121 aa13.22□□□□□ -0.29
HDAC6-232ENST00000489053 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
HDAC6-232ENST00000489053 ABCC11Q96J66 1382 aa13.21□□□□□ -0.29
HDAC6-232ENST00000489053 WAPLQ7Z5K2 1190 aa13.21□□□□□ -0.29
HDAC6-232ENST00000489053 LRRC59Q96AG4 307 aaKnown RBP13.21□□□□□ -0.29
HDAC6-232ENST00000489053 ASXL1Q8IXJ9 1541 aa13.21□□□□□ -0.29
HDAC6-232ENST00000489053 PRAG1Q86YV5 1406 aa13.21□□□□□ -0.3
HDAC6-232ENST00000489053 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
HDAC6-232ENST00000489053 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-232ENST00000489053 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-232ENST00000489053 ESCO1Q5FWF5 840 aa13.2□□□□□ -0.3
HDAC6-232ENST00000489053 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-232ENST00000489053 C1orf167Q5SNV9 1468 aa13.19□□□□□ -0.3
HDAC6-232ENST00000489053 NUTM2FA1L443 756 aa13.19□□□□□ -0.3
HDAC6-232ENST00000489053 SOCS7O14512 581 aa13.19□□□□□ -0.3
HDAC6-232ENST00000489053 SAFB2Q14151 953 aaKnown RBP eCLIP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms