RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SLC52A1Q9NWF4 448 aa16.98■□□□□ 0.31
HDAC6-230ENST00000488543 ERVK-7P63135 1459 aa16.98■□□□□ 0.31
HDAC6-230ENST00000488543 PREX1Q8TCU6 1659 aa16.98■□□□□ 0.31
HDAC6-230ENST00000488543 GPRASP1Q5JY77 1395 aa16.98■□□□□ 0.31
HDAC6-230ENST00000488543 IFT172Q9UG01 1749 aa16.97■□□□□ 0.31
HDAC6-230ENST00000488543 CARD11Q9BXL7 1154 aa16.97■□□□□ 0.31
HDAC6-230ENST00000488543 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
HDAC6-230ENST00000488543 ADGRF5Q8IZF2 1346 aa16.96■□□□□ 0.31
HDAC6-230ENST00000488543 ROCK2O75116 1388 aaKnown RBP16.96■□□□□ 0.31
HDAC6-230ENST00000488543 KIF7Q2M1P5 1343 aa16.95■□□□□ 0.3
HDAC6-230ENST00000488543 PIK3C2BO00750 1634 aa16.94■□□□□ 0.3
HDAC6-230ENST00000488543 ADGRB3O60242 1522 aa16.94■□□□□ 0.3
HDAC6-230ENST00000488543 STAG3Q9UJ98 1225 aa16.93■□□□□ 0.3
HDAC6-230ENST00000488543 SPATA31D1Q6ZQQ2 1576 aa16.91■□□□□ 0.3
HDAC6-230ENST00000488543 MYOM2P54296 1465 aa16.91■□□□□ 0.3
HDAC6-230ENST00000488543 SUPT16HQ9Y5B9 1047 aaKnown RBP16.91■□□□□ 0.3
HDAC6-230ENST00000488543 KIAA1210Q9ULL0 1709 aa16.91■□□□□ 0.3
HDAC6-230ENST00000488543 CFAP70Q5T0N1 1121 aa16.9■□□□□ 0.3
HDAC6-230ENST00000488543 STAC3Q96MF2 364 aa16.9■□□□□ 0.3
HDAC6-230ENST00000488543 IQGAP1P46940 1657 aa16.89■□□□□ 0.29
HDAC6-230ENST00000488543 TNRQ92752 1358 aa16.89■□□□□ 0.29
HDAC6-230ENST00000488543 PPLO60437 1756 aa16.88■□□□□ 0.29
HDAC6-230ENST00000488543 ST20-MTHFSA0A0A6YYL1 179 aa16.88■□□□□ 0.29
HDAC6-230ENST00000488543 MYO5BQ9ULV0 1848 aa16.88■□□□□ 0.29
HDAC6-230ENST00000488543 FER1L4A9Z1Z3 1794 aa16.87■□□□□ 0.29
HDAC6-230ENST00000488543 ANP32CO43423 234 aa16.87■□□□□ 0.29
HDAC6-230ENST00000488543 TMEM131LA2VDJ0 1609 aa16.87■□□□□ 0.29
HDAC6-230ENST00000488543 RPGRIP1LQ68CZ1 1315 aa16.87■□□□□ 0.29
HDAC6-230ENST00000488543 NRXN1Q9ULB1 1477 aa16.87■□□□□ 0.29
HDAC6-230ENST00000488543 C3P01024 1663 aa16.85■□□□□ 0.29
HDAC6-230ENST00000488543 VGFO15240 615 aaPredicted RBP16.85■□□□□ 0.29
HDAC6-230ENST00000488543 A2ML1A8K2U0 1454 aa16.84■□□□□ 0.29
HDAC6-230ENST00000488543 NEXMIFQ5QGS0 1516 aa16.84■□□□□ 0.29
HDAC6-230ENST00000488543 CCER2I3L3R5 266 aa16.83■□□□□ 0.28
HDAC6-230ENST00000488543 TMEM132EQ6IEE7 984 aa16.82■□□□□ 0.28
HDAC6-230ENST00000488543 C14orf93Q9H972 538 aaKnown RBP16.81■□□□□ 0.28
HDAC6-230ENST00000488543 RIMS1Q86UR5 1692 aaKnown RBP16.81■□□□□ 0.28
HDAC6-230ENST00000488543 PIK3C2GO75747 1445 aa16.81■□□□□ 0.28
HDAC6-230ENST00000488543 TESK2Q96S53 571 aa16.8■□□□□ 0.28
HDAC6-230ENST00000488543 BCANQ96GW7 911 aa16.79■□□□□ 0.28
HDAC6-230ENST00000488543 SCAF11Q99590 1463 aaKnown RBP16.79■□□□□ 0.28
HDAC6-230ENST00000488543 ADAMTSL3P82987 1691 aa16.79■□□□□ 0.28
HDAC6-230ENST00000488543 POLR3GLQ9BT43 218 aa16.78■□□□□ 0.28
HDAC6-230ENST00000488543 RIMS2Q9UQ26 1411 aa16.78■□□□□ 0.28
HDAC6-230ENST00000488543 SETBP1Q9Y6X0 1596 aa16.76■□□□□ 0.27
HDAC6-230ENST00000488543 DISP3Q9P2K9 1392 aa16.76■□□□□ 0.27
HDAC6-230ENST00000488543 TRAK1Q9UPV9 953 aa16.76■□□□□ 0.27
HDAC6-230ENST00000488543 ZFYVE9O95405 1425 aa16.75■□□□□ 0.27
HDAC6-230ENST00000488543 LTKP29376 864 aa16.75■□□□□ 0.27
HDAC6-230ENST00000488543 NLRP1Q9C000 1473 aa16.74■□□□□ 0.27
HDAC6-230ENST00000488543 TMEM2Q9UHN6 1383 aa16.74■□□□□ 0.27
HDAC6-230ENST00000488543 NCBP3Q53F19 620 aaKnown RBP16.73■□□□□ 0.27
HDAC6-230ENST00000488543 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
HDAC6-230ENST00000488543 ADGRB1O14514 1584 aa16.73■□□□□ 0.27
HDAC6-230ENST00000488543 UBR1Q8IWV7 1749 aa16.73■□□□□ 0.27
HDAC6-230ENST00000488543 STK26Q9P289 416 aa16.73■□□□□ 0.27
HDAC6-230ENST00000488543 MYO3AQ8NEV4 1616 aa16.72■□□□□ 0.27
HDAC6-230ENST00000488543 TXNDC2Q86VQ3 553 aa16.71■□□□□ 0.27
HDAC6-230ENST00000488543 PTPRMP28827 1452 aa16.7■□□□□ 0.26
HDAC6-230ENST00000488543 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.7■□□□□ 0.26
HDAC6-230ENST00000488543 THEMISQ8N1K5 641 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-230ENST00000488543 HDGFP51858 240 aaKnown RBP16.69■□□□□ 0.26
HDAC6-230ENST00000488543 TMF1P82094 1093 aa16.69■□□□□ 0.26
HDAC6-230ENST00000488543 EIF3AQ14152 1382 aaKnown RBP16.69■□□□□ 0.26
HDAC6-230ENST00000488543 KDM4FA0A1W2PPD8 638 aa16.67■□□□□ 0.26
HDAC6-230ENST00000488543 SAFB2Q14151 953 aaKnown RBP eCLIP16.67■□□□□ 0.26
HDAC6-230ENST00000488543 ALKQ9UM73 1620 aa16.67■□□□□ 0.26
HDAC6-230ENST00000488543 ASXL1Q8IXJ9 1541 aa16.66■□□□□ 0.26
HDAC6-230ENST00000488543 FKBP8Q14318 412 aa16.65■□□□□ 0.26
HDAC6-230ENST00000488543 CCDC184Q52MB2 194 aa16.65■□□□□ 0.26
HDAC6-230ENST00000488543 SLC26A8Q96RN1 970 aa16.65■□□□□ 0.26
HDAC6-230ENST00000488543 EID1Q9Y6B2 187 aa16.65■□□□□ 0.26
HDAC6-230ENST00000488543 MYOM1P52179 1685 aa16.65■□□□□ 0.26
HDAC6-230ENST00000488543 KDM5AP29375 1690 aaKnown RBP16.65■□□□□ 0.26
HDAC6-230ENST00000488543 TSHZ2Q9NRE2 1034 aa16.64■□□□□ 0.26
HDAC6-230ENST00000488543 METP08581 1390 aa16.64■□□□□ 0.25
HDAC6-230ENST00000488543 CENPJQ9HC77 1338 aaPredicted RBP16.64■□□□□ 0.25
HDAC6-230ENST00000488543 CEP170BQ9Y4F5 1589 aaPredicted RBP16.64■□□□□ 0.25
HDAC6-230ENST00000488543 QRICH2Q9H0J4 1663 aa16.63■□□□□ 0.25
HDAC6-230ENST00000488543 ARHGEF28Q8N1W1 1705 aaKnown RBP16.63■□□□□ 0.25
HDAC6-230ENST00000488543 SETD1BQ9UPS6 1966 aaKnown RBP16.63■□□□□ 0.25
HDAC6-230ENST00000488543 NRXN3Q9Y4C0 1643 aa16.62■□□□□ 0.25
HDAC6-230ENST00000488543 SBNO2Q9Y2G9 1366 aa16.62■□□□□ 0.25
HDAC6-230ENST00000488543 YTHDC2Q9H6S0 1430 aaKnown RBP16.62■□□□□ 0.25
HDAC6-230ENST00000488543 ARHGAP23Q9P227 1491 aa16.61■□□□□ 0.25
HDAC6-230ENST00000488543 PER1O15534 1290 aaPredicted RBP16.61■□□□□ 0.25
HDAC6-230ENST00000488543 SLIT1O75093 1534 aa16.61■□□□□ 0.25
HDAC6-230ENST00000488543 CNGB1Q14028 1251 aaPredicted RBP16.6■□□□□ 0.25
HDAC6-230ENST00000488543 WAPLQ7Z5K2 1190 aa16.6■□□□□ 0.25
HDAC6-230ENST00000488543 PRAM1Q96QH2 718 aa16.6■□□□□ 0.25
HDAC6-230ENST00000488543 ADAMTS13Q76LX8 1427 aa16.6■□□□□ 0.25
HDAC6-230ENST00000488543 PLEKHG1Q9ULL1 1385 aa16.59■□□□□ 0.25
HDAC6-230ENST00000488543 AEBP2Q6ZN18 517 aaPredicted RBP16.59■□□□□ 0.25
HDAC6-230ENST00000488543 SETD1AO15047 1707 aaKnown RBP16.58■□□□□ 0.25
HDAC6-230ENST00000488543 CDCA8Q53HL2 280 aa16.58■□□□□ 0.24
HDAC6-230ENST00000488543 PANK3Q9H999 370 aa16.58■□□□□ 0.24
HDAC6-230ENST00000488543 POGKQ9P215 609 aa16.58■□□□□ 0.24
HDAC6-230ENST00000488543 ANKLE2Q86XL3 938 aa16.57■□□□□ 0.24
HDAC6-230ENST00000488543 KTN1Q86UP2 1357 aaKnown RBP16.57■□□□□ 0.24
HDAC6-230ENST00000488543 MRS2Q9HD23 443 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms