RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CFAP65Q6ZU64 1925 aaKnown RBP12.11□□□□□ -0.47
SF3A1-208ENST00000485618 SLIT1O75093 1534 aa12.11□□□□□ -0.47
SF3A1-208ENST00000485618 ARHGAP23Q9P227 1491 aa12.1□□□□□ -0.47
SF3A1-208ENST00000485618 EID1Q9Y6B2 187 aa12.1□□□□□ -0.47
SF3A1-208ENST00000485618 PIK3C2BO00750 1634 aa12.09□□□□□ -0.47
SF3A1-208ENST00000485618 CHGAP10645 457 aaKnown RBP12.09□□□□□ -0.47
SF3A1-208ENST00000485618 IDI1Q13907 227 aa12.09□□□□□ -0.47
SF3A1-208ENST00000485618 NOS1P29475 1434 aa12.09□□□□□ -0.47
SF3A1-208ENST00000485618 TXNDC2Q86VQ3 553 aa12.08□□□□□ -0.48
SF3A1-208ENST00000485618 LTKP29376 864 aa12.06□□□□□ -0.48
SF3A1-208ENST00000485618 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.06□□□□□ -0.48
SF3A1-208ENST00000485618 XIRP1Q702N8 1843 aaKnown RBP12.05□□□□□ -0.48
SF3A1-208ENST00000485618 ZNF326Q5BKZ1 582 aaKnown RBP12.05□□□□□ -0.48
SF3A1-208ENST00000485618 E9PCH4 1651 aa12.05□□□□□ -0.48
SF3A1-208ENST00000485618 TMEM2Q9UHN6 1383 aa12.05□□□□□ -0.48
SF3A1-208ENST00000485618 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
SF3A1-208ENST00000485618 KDM5AP29375 1690 aaKnown RBP12.03□□□□□ -0.48
SF3A1-208ENST00000485618 PPP1R15AO75807 674 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-208ENST00000485618 FOXD1Q16676 465 aa12.03□□□□□ -0.48
SF3A1-208ENST00000485618 ADGRB3O60242 1522 aa12.02□□□□□ -0.48
SF3A1-208ENST00000485618 RPGRIP1LQ68CZ1 1315 aa12.02□□□□□ -0.49
SF3A1-208ENST00000485618 TRPM2O94759 1503 aa12.01□□□□□ -0.49
SF3A1-208ENST00000485618 BCANQ96GW7 911 aa12.01□□□□□ -0.49
SF3A1-208ENST00000485618 TMEM94Q12767 1356 aa12.01□□□□□ -0.49
SF3A1-208ENST00000485618 SPHKAPQ2M3C7 1700 aa12□□□□□ -0.49
SF3A1-208ENST00000485618 VGFO15240 615 aaPredicted RBP12□□□□□ -0.49
SF3A1-208ENST00000485618 STAC3Q96MF2 364 aa12□□□□□ -0.49
SF3A1-208ENST00000485618 NKTRP30414 1462 aaKnown RBP11.99□□□□□ -0.49
SF3A1-208ENST00000485618 NWD1Q149M9 1564 aa11.99□□□□□ -0.49
SF3A1-208ENST00000485618 ROBO1Q9Y6N7 1651 aa11.99□□□□□ -0.49
SF3A1-208ENST00000485618 FAM135BQ49AJ0 1406 aa11.98□□□□□ -0.49
SF3A1-208ENST00000485618 ANKRD30BQ9BXX2 1392 aa11.98□□□□□ -0.49
SF3A1-208ENST00000485618 SLC26A8Q96RN1 970 aa11.98□□□□□ -0.49
SF3A1-208ENST00000485618 KCNA6P17658 529 aa11.97□□□□□ -0.49
SF3A1-208ENST00000485618 RGL3Q3MIN7 710 aa11.97□□□□□ -0.49
SF3A1-208ENST00000485618 PROSER2Q86WR7 435 aaPredicted RBP11.96□□□□□ -0.49
SF3A1-208ENST00000485618 RBM33Q96EV2 1170 aaKnown RBP11.96□□□□□ -0.49
SF3A1-208ENST00000485618 RIMS2Q9UQ26 1411 aa11.95□□□□□ -0.5
SF3A1-208ENST00000485618 KIF1BO60333 1816 aa11.95□□□□□ -0.5
SF3A1-208ENST00000485618 MSH6P52701 1360 aa11.94□□□□□ -0.5
SF3A1-208ENST00000485618 TMEM131LA2VDJ0 1609 aa11.94□□□□□ -0.5
SF3A1-208ENST00000485618 CLSPNQ9HAW4 1339 aa11.94□□□□□ -0.5
SF3A1-208ENST00000485618 RGS17Q9UGC6 210 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-208ENST00000485618 CCER1Q8TC90 406 aaPredicted RBP11.93□□□□□ -0.5
SF3A1-208ENST00000485618 ZFYVE9O95405 1425 aa11.93□□□□□ -0.5
SF3A1-208ENST00000485618 DHX57Q6P158 1386 aaKnown RBP11.92□□□□□ -0.5
SF3A1-208ENST00000485618 PLEKHG1Q9ULL1 1385 aa11.92□□□□□ -0.5
SF3A1-208ENST00000485618 PHLPP1O60346 1717 aa11.92□□□□□ -0.5
SF3A1-208ENST00000485618 MYO5BQ9ULV0 1848 aa11.92□□□□□ -0.5
SF3A1-208ENST00000485618 CLTCL1P53675 1640 aa11.92□□□□□ -0.5
SF3A1-208ENST00000485618 NEUROD1Q13562 356 aa11.91□□□□□ -0.5
SF3A1-208ENST00000485618 TBX22Q9Y458 520 aa11.91□□□□□ -0.5
SF3A1-208ENST00000485618 NUTM2DQ5VT03 806 aaPredicted RBP11.9□□□□□ -0.5
SF3A1-208ENST00000485618 SPATA31E1Q6ZUB1 1445 aa11.89□□□□□ -0.51
SF3A1-208ENST00000485618 CHD2O14647 1828 aaKnown RBP11.89□□□□□ -0.51
SF3A1-208ENST00000485618 POTEAQ6S8J7 498 aa11.89□□□□□ -0.51
SF3A1-208ENST00000485618 DCAF11Q8TEB1 546 aa11.89□□□□□ -0.51
SF3A1-208ENST00000485618 KDM2AQ9Y2K7 1162 aa11.88□□□□□ -0.51
SF3A1-208ENST00000485618 JCADQ9P266 1359 aa11.88□□□□□ -0.51
SF3A1-208ENST00000485618 SETD1AO15047 1707 aaKnown RBP11.88□□□□□ -0.51
SF3A1-208ENST00000485618 DIP2AQ14689 1571 aa11.88□□□□□ -0.51
SF3A1-208ENST00000485618 COL16A1Q07092 1604 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-208ENST00000485618 C14orf37Q86TY3 774 aa11.87□□□□□ -0.51
SF3A1-208ENST00000485618 SLAIN2Q9P270 581 aa11.87□□□□□ -0.51
SF3A1-208ENST00000485618 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
SF3A1-208ENST00000485618 SIN3AQ96ST3 1273 aa11.86□□□□□ -0.51
SF3A1-208ENST00000485618 PIK3R4Q99570 1358 aa11.86□□□□□ -0.51
SF3A1-208ENST00000485618 TONSLQ96HA7 1378 aa11.85□□□□□ -0.51
SF3A1-208ENST00000485618 ADAMTS13Q76LX8 1427 aa11.85□□□□□ -0.51
SF3A1-208ENST00000485618 NEXMIFQ5QGS0 1516 aa11.84□□□□□ -0.51
SF3A1-208ENST00000485618 NCOA3Q9Y6Q9 1424 aa11.84□□□□□ -0.51
SF3A1-208ENST00000485618 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.83□□□□□ -0.52
SF3A1-208ENST00000485618 LRP6O75581 1613 aa11.83□□□□□ -0.52
SF3A1-208ENST00000485618 AHDC1Q5TGY3 1603 aaPredicted RBP11.83□□□□□ -0.52
SF3A1-208ENST00000485618 ADGRF5Q8IZF2 1346 aa11.83□□□□□ -0.52
SF3A1-208ENST00000485618 MEX3CQ5U5Q3 659 aaKnown RBP11.82□□□□□ -0.52
SF3A1-208ENST00000485618 L3MBTL2Q969R5 705 aa11.82□□□□□ -0.52
SF3A1-208ENST00000485618 C14orf93Q9H972 538 aaKnown RBP11.82□□□□□ -0.52
SF3A1-208ENST00000485618 MYOM2P54296 1465 aa11.82□□□□□ -0.52
SF3A1-208ENST00000485618 SHPRHQ149N8 1683 aa11.81□□□□□ -0.52
SF3A1-208ENST00000485618 ATF3P18847 181 aa11.81□□□□□ -0.52
SF3A1-208ENST00000485618 CADPS2Q86UW7 1296 aa11.81□□□□□ -0.52
SF3A1-208ENST00000485618 SPATA31A6Q5VVP1 1343 aa11.81□□□□□ -0.52
SF3A1-208ENST00000485618 SETBP1Q9Y6X0 1596 aa11.8□□□□□ -0.52
SF3A1-208ENST00000485618 PPLO60437 1756 aa11.8□□□□□ -0.52
SF3A1-208ENST00000485618 AMOTL2Q9Y2J4 779 aa11.8□□□□□ -0.52
SF3A1-208ENST00000485618 PTPRUQ92729 1446 aa11.79□□□□□ -0.52
SF3A1-208ENST00000485618 C19orf44Q9H6X5 657 aa11.79□□□□□ -0.52
SF3A1-208ENST00000485618 NRXN3Q9Y4C0 1643 aa11.78□□□□□ -0.52
SF3A1-208ENST00000485618 PIK3C2GO75747 1445 aa11.78□□□□□ -0.52
SF3A1-208ENST00000485618 XRN1Q8IZH2 1706 aaKnown RBP11.78□□□□□ -0.52
SF3A1-208ENST00000485618 ASXL1Q8IXJ9 1541 aa11.78□□□□□ -0.52
SF3A1-208ENST00000485618 DCCP43146 1447 aa11.77□□□□□ -0.52
SF3A1-208ENST00000485618 CFAP70Q5T0N1 1121 aa11.77□□□□□ -0.53
SF3A1-208ENST00000485618 ZNF772Q68DY9 489 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-208ENST00000485618 SIRT1Q96EB6 747 aa11.77□□□□□ -0.53
SF3A1-208ENST00000485618 BRINP3Q76B58 766 aa11.76□□□□□ -0.53
SF3A1-208ENST00000485618 STK26Q9P289 416 aa11.76□□□□□ -0.53
SF3A1-208ENST00000485618 METP08581 1390 aa11.76□□□□□ -0.53
SF3A1-208ENST00000485618 NRXN1Q9ULB1 1477 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms