RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 SLC26A8Q96RN1 970 aa19.37■□□□□ 0.69
HDAC1-209ENST00000484305 LRRC7Q96NW7 1537 aa19.36■□□□□ 0.69
HDAC1-209ENST00000484305 HDGFP51858 240 aaKnown RBP19.35■□□□□ 0.69
HDAC1-209ENST00000484305 NUTM2DQ5VT03 806 aaPredicted RBP19.35■□□□□ 0.69
HDAC1-209ENST00000484305 BCANQ96GW7 911 aa19.35■□□□□ 0.69
HDAC1-209ENST00000484305 CLTCL1P53675 1640 aa19.35■□□□□ 0.69
HDAC1-209ENST00000484305 PLEKHG1Q9ULL1 1385 aa19.34■□□□□ 0.69
HDAC1-209ENST00000484305 PPP1R15AO75807 674 aaPredicted RBP19.34■□□□□ 0.69
HDAC1-209ENST00000484305 SLC4A1APQ9BWU0 796 aaKnown RBP19.34■□□□□ 0.69
HDAC1-209ENST00000484305 TRPM2O94759 1503 aa19.34■□□□□ 0.69
HDAC1-209ENST00000484305 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.33■□□□□ 0.68
HDAC1-209ENST00000484305 XIRP1Q702N8 1843 aaKnown RBP19.32■□□□□ 0.68
HDAC1-209ENST00000484305 KIF1BO60333 1816 aa19.3■□□□□ 0.68
HDAC1-209ENST00000484305 KCNA6P17658 529 aa19.3■□□□□ 0.68
HDAC1-209ENST00000484305 TOM1O60784 492 aa19.29■□□□□ 0.68
HDAC1-209ENST00000484305 ALKQ9UM73 1620 aa19.29■□□□□ 0.68
HDAC1-209ENST00000484305 FOXD1Q16676 465 aa19.28■□□□□ 0.68
HDAC1-209ENST00000484305 CHD2O14647 1828 aaKnown RBP19.28■□□□□ 0.68
HDAC1-209ENST00000484305 SETD5Q9C0A6 1442 aa19.27■□□□□ 0.68
HDAC1-209ENST00000484305 PIP4K2BP78356 416 aa19.27■□□□□ 0.68
HDAC1-209ENST00000484305 ZNF326Q5BKZ1 582 aaKnown RBP19.27■□□□□ 0.68
HDAC1-209ENST00000484305 ADAMTS13Q76LX8 1427 aa19.26■□□□□ 0.67
HDAC1-209ENST00000484305 TBX22Q9Y458 520 aa19.26■□□□□ 0.67
HDAC1-209ENST00000484305 NWD1Q149M9 1564 aa19.26■□□□□ 0.67
HDAC1-209ENST00000484305 SCAF1Q9H7N4 1312 aaKnown RBP19.25■□□□□ 0.67
HDAC1-209ENST00000484305 MPHOSPH9Q99550 1183 aa19.25■□□□□ 0.67
HDAC1-209ENST00000484305 TMEM94Q12767 1356 aa19.23■□□□□ 0.67
HDAC1-209ENST00000484305 PROSER2Q86WR7 435 aaPredicted RBP19.23■□□□□ 0.67
HDAC1-209ENST00000484305 RBM33Q96EV2 1170 aaKnown RBP19.23■□□□□ 0.67
HDAC1-209ENST00000484305 NEXMIFQ5QGS0 1516 aa19.23■□□□□ 0.67
HDAC1-209ENST00000484305 DIP2AQ14689 1571 aa19.23■□□□□ 0.67
HDAC1-209ENST00000484305 NKTRP30414 1462 aaKnown RBP19.22■□□□□ 0.67
HDAC1-209ENST00000484305 NRXN3Q9Y4C0 1643 aa19.22■□□□□ 0.67
HDAC1-209ENST00000484305 RAB3GAP2Q9H2M9 1393 aa19.21■□□□□ 0.67
HDAC1-209ENST00000484305 SETBP1Q9Y6X0 1596 aa19.19■□□□□ 0.66
HDAC1-209ENST00000484305 ACIN1Q9UKV3 1341 aaKnown RBP19.19■□□□□ 0.66
HDAC1-209ENST00000484305 HSPA1LP34931 641 aa19.17■□□□□ 0.66
HDAC1-209ENST00000484305 PIK3R4Q99570 1358 aa19.17■□□□□ 0.66
HDAC1-209ENST00000484305 PPLO60437 1756 aa19.16■□□□□ 0.66
HDAC1-209ENST00000484305 CCDC144AA2RUR9 1427 aa19.16■□□□□ 0.66
HDAC1-209ENST00000484305 PTPRUQ92729 1446 aa19.16■□□□□ 0.66
HDAC1-209ENST00000484305 AMOTL2Q9Y2J4 779 aa19.14■□□□□ 0.65
HDAC1-209ENST00000484305 RPGRIP1LQ68CZ1 1315 aa19.14■□□□□ 0.65
HDAC1-209ENST00000484305 VGFO15240 615 aaPredicted RBP19.13■□□□□ 0.65
HDAC1-209ENST00000484305 METP08581 1390 aa19.13■□□□□ 0.65
HDAC1-209ENST00000484305 XRN1Q8IZH2 1706 aaKnown RBP19.11■□□□□ 0.65
HDAC1-209ENST00000484305 SPATA31E1Q6ZUB1 1445 aa19.11■□□□□ 0.65
HDAC1-209ENST00000484305 MSH6P52701 1360 aa19.1■□□□□ 0.65
HDAC1-209ENST00000484305 RGL3Q3MIN7 710 aa19.1■□□□□ 0.65
HDAC1-209ENST00000484305 SETD1AO15047 1707 aaKnown RBP19.09■□□□□ 0.65
HDAC1-209ENST00000484305 NCOA3Q9Y6Q9 1424 aa19.08■□□□□ 0.65
HDAC1-209ENST00000484305 IFT172Q9UG01 1749 aa19.08■□□□□ 0.64
HDAC1-209ENST00000484305 HRCP23327 699 aa19.07■□□□□ 0.64
HDAC1-209ENST00000484305 C14orf37Q86TY3 774 aa19.07■□□□□ 0.64
HDAC1-209ENST00000484305 FAM135BQ49AJ0 1406 aa19.07■□□□□ 0.64
HDAC1-209ENST00000484305 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.06■□□□□ 0.64
HDAC1-209ENST00000484305 ROBO1Q9Y6N7 1651 aa19.06■□□□□ 0.64
HDAC1-209ENST00000484305 SLAIN2Q9P270 581 aa19.05■□□□□ 0.64
HDAC1-209ENST00000484305 DISP3Q9P2K9 1392 aa19.05■□□□□ 0.64
HDAC1-209ENST00000484305 ADGRF5Q8IZF2 1346 aa19.04■□□□□ 0.64
HDAC1-209ENST00000484305 C19orf44Q9H6X5 657 aa19.04■□□□□ 0.64
HDAC1-209ENST00000484305 ANKRD30BQ9BXX2 1392 aa19.03■□□□□ 0.64
HDAC1-209ENST00000484305 ATF3P18847 181 aa18.99■□□□□ 0.63
HDAC1-209ENST00000484305 CADPS2Q86UW7 1296 aa18.99■□□□□ 0.63
HDAC1-209ENST00000484305 NALCNQ8IZF0 1738 aa18.97■□□□□ 0.63
HDAC1-209ENST00000484305 ROBO2Q9HCK4 1378 aa18.97■□□□□ 0.63
HDAC1-209ENST00000484305 PIK3C2GO75747 1445 aa18.97■□□□□ 0.63
HDAC1-209ENST00000484305 DCCP43146 1447 aa18.96■□□□□ 0.63
HDAC1-209ENST00000484305 PTCH1Q13635 1447 aa18.96■□□□□ 0.63
HDAC1-209ENST00000484305 MED1Q15648 1581 aaPredicted RBP18.96■□□□□ 0.63
HDAC1-209ENST00000484305 ADGRL3Q9HAR2 1447 aa18.95■□□□□ 0.62
HDAC1-209ENST00000484305 PHLPP1O60346 1717 aa18.94■□□□□ 0.62
HDAC1-209ENST00000484305 PRAG1Q86YV5 1406 aa18.94■□□□□ 0.62
HDAC1-209ENST00000484305 NRXN1Q9ULB1 1477 aa18.93■□□□□ 0.62
HDAC1-209ENST00000484305 TMEM132EQ6IEE7 984 aa18.93■□□□□ 0.62
HDAC1-209ENST00000484305 ASXL1Q8IXJ9 1541 aa18.93■□□□□ 0.62
HDAC1-209ENST00000484305 MYOM2P54296 1465 aa18.92■□□□□ 0.62
HDAC1-209ENST00000484305 MST1RQ04912 1400 aa18.91■□□□□ 0.62
HDAC1-209ENST00000484305 ILDR2Q71H61 639 aa18.91■□□□□ 0.62
HDAC1-209ENST00000484305 STK26Q9P289 416 aa18.91■□□□□ 0.62
HDAC1-209ENST00000484305 C14orf93Q9H972 538 aaKnown RBP18.9■□□□□ 0.62
HDAC1-209ENST00000484305 BRINP3Q76B58 766 aa18.89■□□□□ 0.61
HDAC1-209ENST00000484305 LRPPRCP42704 1394 aaKnown RBP18.89■□□□□ 0.61
HDAC1-209ENST00000484305 COL16A1Q07092 1604 aaPredicted RBP18.89■□□□□ 0.61
HDAC1-209ENST00000484305 CFAP70Q5T0N1 1121 aa18.88■□□□□ 0.61
HDAC1-209ENST00000484305 TECPR2O15040 1411 aa18.88■□□□□ 0.61
HDAC1-209ENST00000484305 LAMC1P11047 1609 aa18.88■□□□□ 0.61
HDAC1-209ENST00000484305 KNDC1Q76NI1 1749 aa18.88■□□□□ 0.61
HDAC1-209ENST00000484305 AHDC1Q5TGY3 1603 aaPredicted RBP18.87■□□□□ 0.61
HDAC1-209ENST00000484305 ABCC11Q96J66 1382 aa18.87■□□□□ 0.61
HDAC1-209ENST00000484305 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
HDAC1-209ENST00000484305 YTHDC2Q9H6S0 1430 aaKnown RBP18.86■□□□□ 0.61
HDAC1-209ENST00000484305 WAPLQ7Z5K2 1190 aa18.86■□□□□ 0.61
HDAC1-209ENST00000484305 DCAF11Q8TEB1 546 aa18.86■□□□□ 0.61
HDAC1-209ENST00000484305 DHX57Q6P158 1386 aaKnown RBP18.84■□□□□ 0.61
HDAC1-209ENST00000484305 C1orf167Q5SNV9 1468 aa18.84■□□□□ 0.61
HDAC1-209ENST00000484305 PLEKHH1Q9ULM0 1364 aa18.83■□□□□ 0.61
HDAC1-209ENST00000484305 JCADQ9P266 1359 aa18.82■□□□□ 0.6
HDAC1-209ENST00000484305 NHSL1Q5SYE7 1610 aa18.82■□□□□ 0.6
HDAC1-209ENST00000484305 DDX17Q92841 729 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms