RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 ADGRF5Q8IZF2 1346 aa17.67■□□□□ 0.42
SEC13-216ENST00000479868 DIP2CQ9Y2E4 1556 aa17.67■□□□□ 0.42
SEC13-216ENST00000479868 PANK3Q9H999 370 aa17.67■□□□□ 0.42
SEC13-216ENST00000479868 ABCC3O15438 1527 aa17.66■□□□□ 0.42
SEC13-216ENST00000479868 RIMBP3CA6NJZ7 1639 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 RIMBP3BA6NNM3 1639 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 RIMBP3Q9UFD9 1639 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 ADGRB3O60242 1522 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 WASHC2CQ9Y4E1 1318 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 CFAP70Q5T0N1 1121 aa17.65■□□□□ 0.42
SEC13-216ENST00000479868 LRPPRCP42704 1394 aaKnown RBP17.64■□□□□ 0.41
SEC13-216ENST00000479868 IRX6P78412 446 aaPredicted RBP17.63■□□□□ 0.41
SEC13-216ENST00000479868 CAMSAP1Q5T5Y3 1602 aa17.63■□□□□ 0.41
SEC13-216ENST00000479868 GLI2P10070 1586 aa17.63■□□□□ 0.41
SEC13-216ENST00000479868 NRXN1Q9ULB1 1477 aa17.62■□□□□ 0.41
SEC13-216ENST00000479868 CC2D1BQ5T0F9 858 aaKnown RBP17.62■□□□□ 0.41
SEC13-216ENST00000479868 NLRP13Q86W25 1043 aa17.62■□□□□ 0.41
SEC13-216ENST00000479868 SENP3-EIF4A1A0A087X0R7 540 aa17.61■□□□□ 0.41
SEC13-216ENST00000479868 CHGAP10645 457 aaKnown RBP17.61■□□□□ 0.41
SEC13-216ENST00000479868 NOS1P29475 1434 aa17.61■□□□□ 0.41
SEC13-216ENST00000479868 SIGLEC1Q9BZZ2 1709 aa17.61■□□□□ 0.41
SEC13-216ENST00000479868 EIF3AQ14152 1382 aaKnown RBP17.61■□□□□ 0.41
SEC13-216ENST00000479868 YEATS2Q9ULM3 1422 aa17.61■□□□□ 0.41
SEC13-216ENST00000479868 PPLO60437 1756 aa17.59■□□□□ 0.41
SEC13-216ENST00000479868 MYOM1P52179 1685 aa17.58■□□□□ 0.4
SEC13-216ENST00000479868 SYNMO15061 1565 aa17.58■□□□□ 0.4
SEC13-216ENST00000479868 CDCA8Q53HL2 280 aa17.57■□□□□ 0.4
SEC13-216ENST00000479868 SMG6Q86US8 1419 aaKnown RBP17.57■□□□□ 0.4
SEC13-216ENST00000479868 DIP2BQ9P265 1576 aa17.56■□□□□ 0.4
SEC13-216ENST00000479868 FAM69CQ0P6D2 419 aa17.56■□□□□ 0.4
SEC13-216ENST00000479868 KDM5AP29375 1690 aaKnown RBP17.55■□□□□ 0.4
SEC13-216ENST00000479868 PIK3C2BO00750 1634 aa17.55■□□□□ 0.4
SEC13-216ENST00000479868 PIK3C2GO75747 1445 aa17.55■□□□□ 0.4
SEC13-216ENST00000479868 TSHZ2Q9NRE2 1034 aa17.54■□□□□ 0.4
SEC13-216ENST00000479868 ZC3H13Q5T200 1668 aaKnown RBP17.54■□□□□ 0.4
SEC13-216ENST00000479868 SETBP1Q9Y6X0 1596 aa17.54■□□□□ 0.4
SEC13-216ENST00000479868 TSPOAP1O95153 1857 aa17.53■□□□□ 0.4
SEC13-216ENST00000479868 NUDCQ9Y266 331 aa17.53■□□□□ 0.4
SEC13-216ENST00000479868 ERVK-7P63135 1459 aa17.53■□□□□ 0.4
SEC13-216ENST00000479868 KNSTRNQ9Y448 316 aa17.53■□□□□ 0.4
SEC13-216ENST00000479868 MYO3AQ8NEV4 1616 aa17.53■□□□□ 0.4
SEC13-216ENST00000479868 ARHGAP31Q2M1Z3 1444 aa17.52■□□□□ 0.39
SEC13-216ENST00000479868 ZMYM4Q5VZL5 1548 aa17.51■□□□□ 0.39
SEC13-216ENST00000479868 AMER1Q5JTC6 1135 aaPredicted RBP17.51■□□□□ 0.39
SEC13-216ENST00000479868 RPGRIP1LQ68CZ1 1315 aa17.51■□□□□ 0.39
SEC13-216ENST00000479868 C14orf93Q9H972 538 aaKnown RBP17.51■□□□□ 0.39
SEC13-216ENST00000479868 ADGRB1O14514 1584 aa17.5■□□□□ 0.39
SEC13-216ENST00000479868 ERICH6BQ5W0A0 696 aa17.49■□□□□ 0.39
SEC13-216ENST00000479868 ASXL1Q8IXJ9 1541 aa17.49■□□□□ 0.39
SEC13-216ENST00000479868 NUTM2DQ5VT03 806 aaPredicted RBP17.48■□□□□ 0.39
SEC13-216ENST00000479868 SBNO2Q9Y2G9 1366 aa17.48■□□□□ 0.39
SEC13-216ENST00000479868 NEXMIFQ5QGS0 1516 aa17.48■□□□□ 0.39
SEC13-216ENST00000479868 TRAK1Q9UPV9 953 aa17.47■□□□□ 0.39
SEC13-216ENST00000479868 IDI1Q13907 227 aa17.47■□□□□ 0.39
SEC13-216ENST00000479868 TMEM132EQ6IEE7 984 aa17.47■□□□□ 0.39
SEC13-216ENST00000479868 CENPJQ9HC77 1338 aaPredicted RBP17.47■□□□□ 0.39
SEC13-216ENST00000479868 PREX1Q8TCU6 1659 aa17.46■□□□□ 0.39
SEC13-216ENST00000479868 PPP2R1AP30153 589 aa17.45■□□□□ 0.38
SEC13-216ENST00000479868 SALL2Q9Y467 1007 aaPredicted RBP17.45■□□□□ 0.38
SEC13-216ENST00000479868 QRICH2Q9H0J4 1663 aa17.45■□□□□ 0.38
SEC13-216ENST00000479868 MYO5BQ9ULV0 1848 aa17.45■□□□□ 0.38
SEC13-216ENST00000479868 BLMP54132 1417 aaPredicted RBP17.45■□□□□ 0.38
SEC13-216ENST00000479868 PPP4R2Q9NY27 417 aa17.44■□□□□ 0.38
SEC13-216ENST00000479868 NPC1L1Q9UHC9 1359 aa17.43■□□□□ 0.38
SEC13-216ENST00000479868 RNF123Q5XPI4 1314 aa17.43■□□□□ 0.38
SEC13-216ENST00000479868 INSRP06213 1382 aa17.43■□□□□ 0.38
SEC13-216ENST00000479868 VGFO15240 615 aaPredicted RBP17.43■□□□□ 0.38
SEC13-216ENST00000479868 SLC52A1Q9NWF4 448 aa17.43■□□□□ 0.38
SEC13-216ENST00000479868 CARD14Q9BXL6 1004 aa17.42■□□□□ 0.38
SEC13-216ENST00000479868 TMEM131LA2VDJ0 1609 aa17.4■□□□□ 0.38
SEC13-216ENST00000479868 FBXO31Q5XUX0 539 aaPredicted RBP17.4■□□□□ 0.38
SEC13-216ENST00000479868 ADAMTS8Q9UP79 889 aa17.39■□□□□ 0.38
SEC13-216ENST00000479868 ARHGEF28Q8N1W1 1705 aaKnown RBP17.39■□□□□ 0.37
SEC13-216ENST00000479868 REREQ9P2R6 1566 aa17.39■□□□□ 0.37
SEC13-216ENST00000479868 ZFYVE9O95405 1425 aa17.37■□□□□ 0.37
SEC13-216ENST00000479868 PDE3BQ13370 1112 aa17.37■□□□□ 0.37
SEC13-216ENST00000479868 B4GALNT3Q6L9W6 998 aa17.37■□□□□ 0.37
SEC13-216ENST00000479868 AGLP35573 1532 aa17.37■□□□□ 0.37
SEC13-216ENST00000479868 KIF13AQ9H1H9 1805 aa17.37■□□□□ 0.37
SEC13-216ENST00000479868 SENP3Q9H4L4 574 aaPredicted RBP17.36■□□□□ 0.37
SEC13-216ENST00000479868 CDCA7LQ96GN5 454 aa17.36■□□□□ 0.37
SEC13-216ENST00000479868 SLC12A5Q9H2X9 1139 aa17.35■□□□□ 0.37
SEC13-216ENST00000479868 CLTCQ00610 1675 aaKnown RBP17.34■□□□□ 0.37
SEC13-216ENST00000479868 WDR43Q15061 677 aaKnown RBP eCLIP17.34■□□□□ 0.371e-6■■■□□ 17.5
SEC13-216ENST00000479868 TULP4Q9NRJ4 1543 aa17.33■□□□□ 0.36
SEC13-216ENST00000479868 NSD3Q9BZ95 1437 aa17.32■□□□□ 0.36
SEC13-216ENST00000479868 RCAN3Q9UKA8 241 aa17.31■□□□□ 0.36
SEC13-216ENST00000479868 PPP6R1Q9UPN7 881 aa17.3■□□□□ 0.36
SEC13-216ENST00000479868 SAFB2Q14151 953 aaKnown RBP eCLIP17.3■□□□□ 0.36
SEC13-216ENST00000479868 MLECQ14165 292 aa17.3■□□□□ 0.36
SEC13-216ENST00000479868 STK26Q9P289 416 aa17.3■□□□□ 0.36
SEC13-216ENST00000479868 EVC2Q86UK5 1308 aa17.3■□□□□ 0.36
SEC13-216ENST00000479868 ARHGEF40Q8TER5 1519 aa17.29■□□□□ 0.36
SEC13-216ENST00000479868 RRP1P56182 461 aaKnown RBP17.29■□□□□ 0.36
SEC13-216ENST00000479868 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
SEC13-216ENST00000479868 SPATA31D1Q6ZQQ2 1576 aa17.27■□□□□ 0.36
SEC13-216ENST00000479868 STAG3Q9UJ98 1225 aa17.27■□□□□ 0.36
SEC13-216ENST00000479868 RBM19Q9Y4C8 960 aaKnown RBP17.27■□□□□ 0.36
SEC13-216ENST00000479868 PUS7Q96PZ0 661 aaKnown RBP17.26■□□□□ 0.35
SEC13-216ENST00000479868 PTPRMP28827 1452 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms