RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 BBXQ8WY36 941 aaPredicted RBP17.43■□□□□ 0.38
HDAC1-206ENST00000476391 GBP4Q96PP9 640 aa17.43■□□□□ 0.38
HDAC1-206ENST00000476391 IBTKQ9P2D0 1353 aaPredicted RBP17.43■□□□□ 0.38
HDAC1-206ENST00000476391 NKTRP30414 1462 aaKnown RBP17.42■□□□□ 0.38
HDAC1-206ENST00000476391 ADAMTS8Q9UP79 889 aa17.42■□□□□ 0.38
HDAC1-206ENST00000476391 DDIT3P35638 169 aa17.42■□□□□ 0.38
HDAC1-206ENST00000476391 TNNT2P45379 298 aaPredicted RBP17.41■□□□□ 0.38
HDAC1-206ENST00000476391 CCDC94Q9BW85 323 aaPredicted RBP17.41■□□□□ 0.38
HDAC1-206ENST00000476391 CIZ1Q9ULV3 898 aaPredicted RBP17.41■□□□□ 0.38
HDAC1-206ENST00000476391 ANKRD30AQ9BXX3 1397 aa17.41■□□□□ 0.38
HDAC1-206ENST00000476391 PDIA4P13667 645 aaKnown RBP17.41■□□□□ 0.38
HDAC1-206ENST00000476391 RTEL1-TNFRSF6BF6WH68 1400 aa17.41■□□□□ 0.38
HDAC1-206ENST00000476391 ABCC5O15440 1437 aa17.41■□□□□ 0.38
HDAC1-206ENST00000476391 CSPP1Q1MSJ5 1256 aa17.4■□□□□ 0.38
HDAC1-206ENST00000476391 NOL7Q9UMY1 257 aaKnown RBP17.4■□□□□ 0.38
HDAC1-206ENST00000476391 KIF20AO95235 890 aa17.4■□□□□ 0.38
HDAC1-206ENST00000476391 ZSCAN20P17040 1043 aaPredicted RBP17.4■□□□□ 0.38
HDAC1-206ENST00000476391 HSCBQ8IWL3 235 aa17.4■□□□□ 0.38
HDAC1-206ENST00000476391 PMFBP1Q8TBY8 1022 aa17.39■□□□□ 0.37
HDAC1-206ENST00000476391 GTF2E1P29083 439 aaPredicted RBP17.39■□□□□ 0.37
HDAC1-206ENST00000476391 C22orf23Q9BZE7 217 aa17.39■□□□□ 0.37
HDAC1-206ENST00000476391 CANXP27824 592 aaKnown RBP17.38■□□□□ 0.37
HDAC1-206ENST00000476391 GTPBP4Q9BZE4 634 aaKnown RBP17.38■□□□□ 0.37
HDAC1-206ENST00000476391 CC2D1BQ5T0F9 858 aaKnown RBP17.38■□□□□ 0.37
HDAC1-206ENST00000476391 CADPSQ9ULU8 1353 aa17.38■□□□□ 0.37
HDAC1-206ENST00000476391 TNPO1Q92973 898 aaKnown RBP17.37■□□□□ 0.37
HDAC1-206ENST00000476391 BCL11BQ9C0K0 894 aaPredicted RBP17.37■□□□□ 0.37
HDAC1-206ENST00000476391 PRDM10Q9NQV6 1147 aa17.36■□□□□ 0.37
HDAC1-206ENST00000476391 MCM5P33992 734 aa17.36■□□□□ 0.37
HDAC1-206ENST00000476391 WDR43Q15061 677 aaKnown RBP eCLIP17.36■□□□□ 0.37
HDAC1-206ENST00000476391 STAC3Q96MF2 364 aa17.36■□□□□ 0.37
HDAC1-206ENST00000476391 ABCA10Q8WWZ4 1543 aa17.35■□□□□ 0.37
HDAC1-206ENST00000476391 BCAR3O75815 825 aa17.35■□□□□ 0.37
HDAC1-206ENST00000476391 NESP48681 1621 aa17.35■□□□□ 0.37
HDAC1-206ENST00000476391 RAB3GAP1Q15042 981 aa17.35■□□□□ 0.37
HDAC1-206ENST00000476391 SASS6Q6UVJ0 657 aa17.35■□□□□ 0.37
HDAC1-206ENST00000476391 SMC5Q8IY18 1101 aa17.34■□□□□ 0.37
HDAC1-206ENST00000476391 COL17A1Q9UMD9 1497 aaPredicted RBP17.34■□□□□ 0.37
HDAC1-206ENST00000476391 PPP4R3BQ5MIZ7 849 aa17.33■□□□□ 0.37
HDAC1-206ENST00000476391 KIAA0586Q9BVV6 1533 aa17.33■□□□□ 0.37
HDAC1-206ENST00000476391 LETM1O95202 739 aaPredicted RBP17.33■□□□□ 0.36
HDAC1-206ENST00000476391 PKD2Q13563 968 aa17.33■□□□□ 0.36
HDAC1-206ENST00000476391 SNX21Q969T3 373 aa17.33■□□□□ 0.36
HDAC1-206ENST00000476391 PLXNC1O60486 1568 aa17.33■□□□□ 0.36
HDAC1-206ENST00000476391 PDLIM2Q96JY6 352 aa17.32■□□□□ 0.36
HDAC1-206ENST00000476391 NAP1L2Q9ULW6 460 aaPredicted RBP17.31■□□□□ 0.36
HDAC1-206ENST00000476391 PDZRN3Q9UPQ7 1066 aa17.31■□□□□ 0.36
HDAC1-206ENST00000476391 E9PSI1 815 aa17.31■□□□□ 0.36
HDAC1-206ENST00000476391 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.31■□□□□ 0.36
HDAC1-206ENST00000476391 XPCQ01831 940 aaPredicted RBP17.3■□□□□ 0.36
HDAC1-206ENST00000476391 ZKSCAN5Q9Y2L8 839 aa17.3■□□□□ 0.36
HDAC1-206ENST00000476391 CEP170Q5SW79 1584 aa17.3■□□□□ 0.36
HDAC1-206ENST00000476391 ADGBQ8N7X0 1667 aa17.3■□□□□ 0.36
HDAC1-206ENST00000476391 KLHL40Q2TBA0 621 aa17.3■□□□□ 0.36
HDAC1-206ENST00000476391 CAMSAP2Q08AD1 1489 aa17.29■□□□□ 0.36
HDAC1-206ENST00000476391 GOLGA6L22H0YM25 854 aa17.29■□□□□ 0.36
HDAC1-206ENST00000476391 COG6Q9Y2V7 657 aa17.29■□□□□ 0.36
HDAC1-206ENST00000476391 ZNF445P59923 1031 aa17.29■□□□□ 0.36
HDAC1-206ENST00000476391 PANK3Q9H999 370 aa17.29■□□□□ 0.36
HDAC1-206ENST00000476391 TAF3Q5VWG9 929 aa17.28■□□□□ 0.36
HDAC1-206ENST00000476391 CLEC17AQ6ZS10 378 aa17.28■□□□□ 0.36
HDAC1-206ENST00000476391 ARID3AQ99856 593 aa17.28■□□□□ 0.36
HDAC1-206ENST00000476391 TRPM1Q7Z4N2 1603 aa17.28■□□□□ 0.36
HDAC1-206ENST00000476391 MFAP1P55081 439 aaKnown RBP17.27■□□□□ 0.36
HDAC1-206ENST00000476391 NGEFQ8N5V2 710 aa17.27■□□□□ 0.36
HDAC1-206ENST00000476391 IPO4Q8TEX9 1081 aaKnown RBP17.27■□□□□ 0.36
HDAC1-206ENST00000476391 ARHGAP31Q2M1Z3 1444 aa17.27■□□□□ 0.36
HDAC1-206ENST00000476391 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
HDAC1-206ENST00000476391 ABCC2Q92887 1545 aa17.26■□□□□ 0.35
HDAC1-206ENST00000476391 RWDD1Q9H446 243 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-206ENST00000476391 LAMC1P11047 1609 aa17.26■□□□□ 0.35
HDAC1-206ENST00000476391 PANK1Q8TE04 598 aa17.26■□□□□ 0.35
HDAC1-206ENST00000476391 SPINK5Q9NQ38 1064 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-206ENST00000476391 PPP2R1AP30153 589 aa17.25■□□□□ 0.35
HDAC1-206ENST00000476391 RBM25P49756 843 aaKnown RBP17.25■□□□□ 0.35
HDAC1-206ENST00000476391 TAF7LQ5H9L4 462 aa17.25■□□□□ 0.35
HDAC1-206ENST00000476391 KDM2AQ9Y2K7 1162 aa17.24■□□□□ 0.35
HDAC1-206ENST00000476391 PCDHB15Q9Y5E8 787 aa17.24■□□□□ 0.35
HDAC1-206ENST00000476391 ADGRL2O95490 1459 aa17.24■□□□□ 0.35
HDAC1-206ENST00000476391 TMEM51Q9NW97 253 aa17.23■□□□□ 0.35
HDAC1-206ENST00000476391 MYRIPQ8NFW9 859 aa17.23■□□□□ 0.35
HDAC1-206ENST00000476391 DDX49Q9Y6V7 483 aaKnown RBP17.23■□□□□ 0.35
HDAC1-206ENST00000476391 GPRASP1Q5JY77 1395 aa17.23■□□□□ 0.35
HDAC1-206ENST00000476391 HSP90AB1P08238 724 aaKnown RBP17.22■□□□□ 0.35
HDAC1-206ENST00000476391 PIK3C2GO75747 1445 aa17.22■□□□□ 0.35
HDAC1-206ENST00000476391 DISP3Q9P2K9 1392 aa17.21■□□□□ 0.35
HDAC1-206ENST00000476391 CCDC39Q9UFE4 941 aa17.21■□□□□ 0.35
HDAC1-206ENST00000476391 SHROOM2Q13796 1616 aa17.21■□□□□ 0.35
HDAC1-206ENST00000476391 CDK13Q14004 1512 aaKnown RBP17.21■□□□□ 0.34
HDAC1-206ENST00000476391 KDM5DQ9BY66 1539 aa17.21■□□□□ 0.34
HDAC1-206ENST00000476391 PRAG1Q86YV5 1406 aa17.2■□□□□ 0.34
HDAC1-206ENST00000476391 TESK2Q96S53 571 aa17.2■□□□□ 0.34
HDAC1-206ENST00000476391 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
HDAC1-206ENST00000476391 CHMP4BQ9H444 224 aaKnown RBP17.2■□□□□ 0.34
HDAC1-206ENST00000476391 RAD54L2Q9Y4B4 1467 aa17.2■□□□□ 0.34
HDAC1-206ENST00000476391 PRDM15P57071 1507 aaPredicted RBP17.2■□□□□ 0.34
HDAC1-206ENST00000476391 PRIMPOLQ96LW4 560 aa17.19■□□□□ 0.34
HDAC1-206ENST00000476391 ERBINQ96RT1 1412 aa17.19■□□□□ 0.34
HDAC1-206ENST00000476391 FAM135AQ9P2D6 1515 aa17.19■□□□□ 0.34
HDAC1-206ENST00000476391 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms