RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, human

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF1-205	ENST00000475993	ZNF830	Q96NB3	372 aa	Predicted RBP	13.4	□□□□□ -0.26
ABCF1-205	ENST00000475993	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.4	□□□□□ -0.26
ABCF1-205	ENST00000475993	CEP170	Q5SW79	1584 aa		13.4	□□□□□ -0.26
ABCF1-205	ENST00000475993	ADGRL2	O95490	1459 aa		13.4	□□□□□ -0.26
ABCF1-205	ENST00000475993	NCL	P19338	710 aa	Known RBP	13.39	□□□□□ -0.27
ABCF1-205	ENST00000475993	TRIM44	Q96DX7	344 aa	Predicted RBP	13.39	□□□□□ -0.27
ABCF1-205	ENST00000475993	FAM13B	Q9NYF5	915 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	KDM2A	Q9Y2K7	1162 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	CGNL1	Q0VF96	1302 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	DDX11L8	A8MPP1	907 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	KIAA1211	Q6ZU35	1233 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	ZFP91	Q96JP5	570 aa	Predicted RBP	13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	NKTR	P30414	1462 aa	Known RBP	13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	CCDC144A	A2RUR9	1427 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	TMEM51	Q9NW97	253 aa		13.38	□□□□□ -0.27
ABCF1-205	ENST00000475993	URB2	Q14146	1524 aa	Known RBP	13.37	□□□□□ -0.27
ABCF1-205	ENST00000475993	TRPM1	Q7Z4N2	1603 aa		13.37	□□□□□ -0.27
ABCF1-205	ENST00000475993	PDS5B	Q9NTI5	1447 aa		13.37	□□□□□ -0.27
ABCF1-205	ENST00000475993	BCAR3	O75815	825 aa		13.37	□□□□□ -0.27
ABCF1-205	ENST00000475993	PANK3	Q9H999	370 aa		13.37	□□□□□ -0.27
ABCF1-205	ENST00000475993	TERF1	P54274	439 aa		13.36	□□□□□ -0.27
ABCF1-205	ENST00000475993	PDE3A	Q14432	1141 aa		13.36	□□□□□ -0.27
ABCF1-205	ENST00000475993	CLUAP1	Q96AJ1	413 aa		13.36	□□□□□ -0.27
ABCF1-205	ENST00000475993	FTSJ3	Q8IY81	847 aa	Known RBP	13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	CAMSAP2	Q08AD1	1489 aa		13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	SPRYD3	Q8NCJ5	442 aa		13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	DISP3	Q9P2K9	1392 aa		13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	NINL	Q9Y2I6	1382 aa		13.35	□□□□□ -0.27
ABCF1-205	ENST00000475993	WDR43	Q15061	677 aa	Known RBP eCLIP	13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	KDM5D	Q9BY66	1539 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	GPRASP1	Q5JY77	1395 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	OFD1	O75665	1012 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	RIPK4	P57078	832 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	GAS2L3	Q86XJ1	694 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	ZNF692	Q9BU19	519 aa	Predicted RBP	13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	CROCC2	H7BZ55	1655 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	PRAG1	Q86YV5	1406 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	PPP4R3B	Q5MIZ7	849 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	TESK2	Q96S53	571 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	MAP7D2	Q96T17	732 aa		13.34	□□□□□ -0.27
ABCF1-205	ENST00000475993	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.33	□□□□□ -0.28
ABCF1-205	ENST00000475993	ANKRD50	Q9ULJ7	1429 aa		13.33	□□□□□ -0.28
ABCF1-205	ENST00000475993	BRD2	P25440	801 aa	Known RBP	13.33	□□□□□ -0.28
ABCF1-205	ENST00000475993	ANP32B	Q92688	251 aa	Known RBP	13.33	□□□□□ -0.28
ABCF1-205	ENST00000475993	CHMP4A	Q9BY43	222 aa		13.33	□□□□□ -0.28
ABCF1-205	ENST00000475993	LAMC1	P11047	1609 aa		13.32	□□□□□ -0.28
ABCF1-205	ENST00000475993	PPP2R1A	P30153	589 aa		13.32	□□□□□ -0.28
ABCF1-205	ENST00000475993	PPP1R9B	Q96SB3	815 aa		13.32	□□□□□ -0.28
ABCF1-205	ENST00000475993	ANKRD30A	Q9BXX3	1397 aa		13.32	□□□□□ -0.28
ABCF1-205	ENST00000475993	DDIT3	P35638	169 aa		13.31	□□□□□ -0.28
ABCF1-205	ENST00000475993	NCOA3	Q9Y6Q9	1424 aa		13.31	□□□□□ -0.28
ABCF1-205	ENST00000475993	TARBP1	Q13395	1621 aa	Known RBP	13.31	□□□□□ -0.28
ABCF1-205	ENST00000475993	ZSCAN30	Q86W11	494 aa		13.31	□□□□□ -0.28
ABCF1-205	ENST00000475993	PRDM15	P57071	1507 aa	Predicted RBP	13.31	□□□□□ -0.28
ABCF1-205	ENST00000475993	EIF4G3	O43432	1585 aa	Known RBP	13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	CCDC173	Q0VFZ6	552 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	NUP155	O75694	1391 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	ERBIN	Q96RT1	1412 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	ARID3C	A6NKF2	412 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	DMTN	Q08495	405 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	PMFBP1	Q8TBY8	1022 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993		E9PSI1	815 aa		13.3	□□□□□ -0.28
ABCF1-205	ENST00000475993	PLXNC1	O60486	1568 aa		13.29	□□□□□ -0.28
ABCF1-205	ENST00000475993	COG6	Q9Y2V7	657 aa		13.29	□□□□□ -0.28
ABCF1-205	ENST00000475993	TDRD9	Q8NDG6	1382 aa	Known RBP	13.29	□□□□□ -0.28
ABCF1-205	ENST00000475993	NBPF1	Q3BBV0	1214 aa		13.29	□□□□□ -0.28
ABCF1-205	ENST00000475993	SECISBP2L	Q93073	1101 aa	Known RBP	13.29	□□□□□ -0.28
ABCF1-205	ENST00000475993	ABCC2	Q92887	1545 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	SCAPER	Q9BY12	1400 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	IQGAP2	Q13576	1575 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	TNNT2	P45379	298 aa	Predicted RBP	13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	UTP14C	Q5TAP6	766 aa	Known RBP	13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	PANK1	Q8TE04	598 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	C22orf23	Q9BZE7	217 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	PDZRN3	Q9UPQ7	1066 aa		13.28	□□□□□ -0.28
ABCF1-205	ENST00000475993	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.27	□□□□□ -0.28
ABCF1-205	ENST00000475993	PTPRG	P23470	1445 aa		13.27	□□□□□ -0.28
ABCF1-205	ENST00000475993	PIK3C2G	O75747	1445 aa		13.27	□□□□□ -0.29
ABCF1-205	ENST00000475993	ITSN2	Q9NZM3	1697 aa		13.27	□□□□□ -0.29
ABCF1-205	ENST00000475993	ABCC10	Q5T3U5	1492 aa		13.26	□□□□□ -0.29
ABCF1-205	ENST00000475993	MAGI2	Q86UL8	1455 aa		13.26	□□□□□ -0.29
ABCF1-205	ENST00000475993	TMF1	P82094	1093 aa		13.26	□□□□□ -0.29
ABCF1-205	ENST00000475993	PCDHB15	Q9Y5E8	787 aa		13.26	□□□□□ -0.29
ABCF1-205	ENST00000475993	TNPO1	Q92973	898 aa	Known RBP	13.26	□□□□□ -0.29
ABCF1-205	ENST00000475993	HSCB	Q8IWL3	235 aa		13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	WDR7	Q9Y4E6	1490 aa		13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	APAF1	O14727	1248 aa		13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	PTMS	P20962	102 aa		13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	PBRM1	Q86U86	1689 aa		13.25	□□□□□ -0.29
ABCF1-205	ENST00000475993	CCDC146	Q8IYE0	955 aa		13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	NUP153	P49790	1475 aa	Known RBP	13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	MSN	P26038	577 aa	Known RBP	13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	MTERF4	Q7Z6M4	381 aa	Known RBP	13.24	□□□□□ -0.29
ABCF1-205	ENST00000475993	GBP4	Q96PP9	640 aa		13.24	□□□□□ -0.29

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