RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 PEG3Q9GZU2 1588 aa9.25□□□□□ -0.93
ATPAF1-204ENST00000474020 PPP4CP60510 307 aa9.25□□□□□ -0.93
ATPAF1-204ENST00000474020 HIC1Q14526 733 aa9.25□□□□□ -0.93
ATPAF1-204ENST00000474020 RBM46Q8TBY0 533 aaKnown RBP9.24□□□□□ -0.93
ATPAF1-204ENST00000474020 ADGRG1Q9Y653 693 aa9.24□□□□□ -0.93
ATPAF1-204ENST00000474020 ITGBL1O95965 494 aaPredicted RBP9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 SWT1Q5T5J6 900 aaKnown RBP9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 FAM9AQ8IZU1 332 aaPredicted RBP9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 NECTIN2Q92692 538 aa9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 PCGF6Q9BYE7 350 aa9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 EIF4G1Q04637 1599 aaKnown RBP9.23□□□□□ -0.93
ATPAF1-204ENST00000474020 GPR37O15354 613 aa9.22□□□□□ -0.93
ATPAF1-204ENST00000474020 GNPATO15228 680 aa9.21□□□□□ -0.94
ATPAF1-204ENST00000474020 DNAJB2P25686 324 aa9.21□□□□□ -0.94
ATPAF1-204ENST00000474020 SLC4A3P48751 1232 aa9.21□□□□□ -0.94
ATPAF1-204ENST00000474020 TRIM26Q12899 539 aaPredicted RBP9.21□□□□□ -0.94
ATPAF1-204ENST00000474020 SLF2Q8IX21 1173 aa9.21□□□□□ -0.94
ATPAF1-204ENST00000474020 RNF40O75150 1001 aa9.2□□□□□ -0.94
ATPAF1-204ENST00000474020 HRCP23327 699 aa9.2□□□□□ -0.94
ATPAF1-204ENST00000474020 EEA1Q15075 1411 aa9.2□□□□□ -0.94
ATPAF1-204ENST00000474020 BAZ1BQ9UIG0 1483 aaKnown RBP9.2□□□□□ -0.94
ATPAF1-204ENST00000474020 TULP1O00294 542 aaPredicted RBP9.19□□□□□ -0.94
ATPAF1-204ENST00000474020 FAM161AQ3B820 660 aa9.19□□□□□ -0.94
ATPAF1-204ENST00000474020 GPIHBP1Q8IV16 184 aa9.19□□□□□ -0.94
ATPAF1-204ENST00000474020 RCCD1A6NED2 376 aa9.18□□□□□ -0.94
ATPAF1-204ENST00000474020 OATP04181 439 aa9.18□□□□□ -0.94
ATPAF1-204ENST00000474020 TMEM134Q9H6X4 195 aa9.18□□□□□ -0.94
ATPAF1-204ENST00000474020 ATAD2BQ9ULI0 1458 aa9.17□□□□□ -0.94
ATPAF1-204ENST00000474020 KCNC4Q03721 635 aa9.17□□□□□ -0.94
ATPAF1-204ENST00000474020 PXYLP1Q8TE99 480 aa9.17□□□□□ -0.94
ATPAF1-204ENST00000474020 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.16□□□□□ -0.94
ATPAF1-204ENST00000474020 A0A0G2JS52 829 aa9.16□□□□□ -0.94
ATPAF1-204ENST00000474020 RGS20O76081 388 aa9.16□□□□□ -0.94
ATPAF1-204ENST00000474020 FECHP22830 423 aa9.16□□□□□ -0.94
ATPAF1-204ENST00000474020 METTL3Q86U44 580 aaKnown RBP9.15□□□□□ -0.94
ATPAF1-204ENST00000474020 APLP1P51693 650 aa9.14□□□□□ -0.95
ATPAF1-204ENST00000474020 TJAP1Q5JTD0 557 aa9.13□□□□□ -0.95
ATPAF1-204ENST00000474020 ABCC8Q09428 1581 aa9.12□□□□□ -0.95
ATPAF1-204ENST00000474020 MTRQ99707 1265 aa9.12□□□□□ -0.95
ATPAF1-204ENST00000474020 PRR14Q9BWN1 585 aa9.12□□□□□ -0.95
ATPAF1-204ENST00000474020 WRNQ14191 1432 aaPredicted RBP eCLIP9.12□□□□□ -0.95
ATPAF1-204ENST00000474020 IL21Q9HBE4 155 aa9.11□□□□□ -0.95
ATPAF1-204ENST00000474020 ZEB1P37275 1124 aaPredicted RBP9.1□□□□□ -0.95
ATPAF1-204ENST00000474020 HMGXB3Q12766 1538 aa9.09□□□□□ -0.95
ATPAF1-204ENST00000474020 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.08□□□□□ -0.96
ATPAF1-204ENST00000474020 IRX2Q9BZI1 471 aaPredicted RBP9.08□□□□□ -0.96
ATPAF1-204ENST00000474020 SLC10A3P09131 477 aa9.06□□□□□ -0.96
ATPAF1-204ENST00000474020 MAP2K5Q13163 448 aa9.06□□□□□ -0.96
ATPAF1-204ENST00000474020 KMT5BQ4FZB7 885 aa9.06□□□□□ -0.96
ATPAF1-204ENST00000474020 PCDHB3Q9Y5E6 796 aa9.06□□□□□ -0.96
ATPAF1-204ENST00000474020 NCAPD3P42695 1498 aa9.06□□□□□ -0.96
ATPAF1-204ENST00000474020 GOLGA3Q08378 1498 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 TNIKQ9UKE5 1360 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 ACTN4O43707 911 aaKnown RBP9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 CFHP08603 1231 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 RSPH4AQ5TD94 716 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 ZNF516Q92618 1163 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 PHOX2BQ99453 314 aa9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 DAXXQ9UER7 740 aaPredicted RBP9.05□□□□□ -0.96
ATPAF1-204ENST00000474020 COPS2P61201 443 aa9.04□□□□□ -0.96
ATPAF1-204ENST00000474020 UBTFP17480 764 aaKnown RBP9.03□□□□□ -0.96
ATPAF1-204ENST00000474020 LMOD2Q6P5Q4 547 aa9.03□□□□□ -0.96
ATPAF1-204ENST00000474020 MINK1Q8N4C8 1332 aaPredicted RBP9.03□□□□□ -0.96
ATPAF1-204ENST00000474020 NLRP7Q8WX94 980 aa9.02□□□□□ -0.97
ATPAF1-204ENST00000474020 SOGA1O94964 1423 aa9.02□□□□□ -0.97
ATPAF1-204ENST00000474020 CEP164Q9UPV0 1460 aa9.02□□□□□ -0.97
ATPAF1-204ENST00000474020 IRF6O14896 467 aa9.01□□□□□ -0.97
ATPAF1-204ENST00000474020 ZPR1O75312 459 aa9.01□□□□□ -0.97
ATPAF1-204ENST00000474020 CEP162Q5TB80 1403 aa9.01□□□□□ -0.97
ATPAF1-204ENST00000474020 BLOC1S3Q6QNY0 202 aa9.01□□□□□ -0.97
ATPAF1-204ENST00000474020 SULF1Q8IWU6 871 aa9□□□□□ -0.97
ATPAF1-204ENST00000474020 DDX11L8A8MPP1 907 aa8.99□□□□□ -0.97
ATPAF1-204ENST00000474020 RDH13Q8NBN7 331 aa8.99□□□□□ -0.97
ATPAF1-204ENST00000474020 SYNJ1O43426 1573 aa8.99□□□□□ -0.97
ATPAF1-204ENST00000474020 KIF21BO75037 1637 aa8.98□□□□□ -0.97
ATPAF1-204ENST00000474020 PPP1R18Q6NYC8 613 aa8.98□□□□□ -0.97
ATPAF1-204ENST00000474020 NKX2-3Q8TAU0 364 aa8.98□□□□□ -0.97
ATPAF1-204ENST00000474020 GGCXP38435 758 aa8.97□□□□□ -0.97
ATPAF1-204ENST00000474020 CCDC102AQ96A19 550 aa8.97□□□□□ -0.97
ATPAF1-204ENST00000474020 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
ATPAF1-204ENST00000474020 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.96□□□□□ -0.98
ATPAF1-204ENST00000474020 NR1I2O75469 434 aa8.95□□□□□ -0.98
ATPAF1-204ENST00000474020 BIVM-ERCC5R4GMW8 1640 aa8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 TLL1O43897 1013 aa8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 GCGRP47871 477 aa8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 BARGINQ6ZT62 677 aa8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 ZC3H15Q8WU90 426 aaKnown RBP8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 TMUB1Q9BVT8 246 aa8.94□□□□□ -0.98
ATPAF1-204ENST00000474020 ZMYND10O75800 440 aa8.93□□□□□ -0.98
ATPAF1-204ENST00000474020 MDM2Q00987 491 aaPredicted RBP8.93□□□□□ -0.98
ATPAF1-204ENST00000474020 CFTRP13569 1480 aa8.93□□□□□ -0.98
ATPAF1-204ENST00000474020 CD46P15529 392 aa8.92□□□□□ -0.98
ATPAF1-204ENST00000474020 FUT2Q10981 343 aa8.92□□□□□ -0.98
ATPAF1-204ENST00000474020 PUS10Q3MIT2 529 aaKnown RBP8.92□□□□□ -0.98
ATPAF1-204ENST00000474020 SCUBE3Q8IX30 993 aa8.92□□□□□ -0.98
ATPAF1-204ENST00000474020 RUSC2Q8N2Y8 1516 aa8.91□□□□□ -0.98
ATPAF1-204ENST00000474020 ATP6V1AP38606 617 aa8.91□□□□□ -0.98
ATPAF1-204ENST00000474020 KRI1Q8N9T8 703 aaKnown RBP8.91□□□□□ -0.98
ATPAF1-204ENST00000474020 CLIP1P30622 1438 aa8.9□□□□□ -0.98
ATPAF1-204ENST00000474020 KIF27Q86VH2 1401 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms