RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 KIF1BO60333 1816 aa18.35■□□□□ 0.53
SPTLC1-204ENST00000469778 MED14O60244 1454 aa18.34■□□□□ 0.53
SPTLC1-204ENST00000469778 SCAF11Q99590 1463 aaKnown RBP18.34■□□□□ 0.53
SPTLC1-204ENST00000469778 RIMS2Q9UQ26 1411 aa18.34■□□□□ 0.53
SPTLC1-204ENST00000469778 ZFYVE9O95405 1425 aa18.33■□□□□ 0.53
SPTLC1-204ENST00000469778 PPP1R15AO75807 674 aaPredicted RBP18.33■□□□□ 0.52
SPTLC1-204ENST00000469778 LTKP29376 864 aa18.33■□□□□ 0.52
SPTLC1-204ENST00000469778 NCKAP5LQ9HCH0 1330 aa18.32■□□□□ 0.52
SPTLC1-204ENST00000469778 RGL3Q3MIN7 710 aa18.3■□□□□ 0.52
SPTLC1-204ENST00000469778 NPHP4O75161 1426 aaPredicted RBP18.3■□□□□ 0.52
SPTLC1-204ENST00000469778 PLEKHG1Q9ULL1 1385 aa18.3■□□□□ 0.52
SPTLC1-204ENST00000469778 STRCQ7RTU9 1775 aa18.27■□□□□ 0.52
SPTLC1-204ENST00000469778 TIMELESSQ9UNS1 1208 aa18.27■□□□□ 0.52
SPTLC1-204ENST00000469778 CCER1Q8TC90 406 aaPredicted RBP18.26■□□□□ 0.51
SPTLC1-204ENST00000469778 TBX22Q9Y458 520 aa18.26■□□□□ 0.51
SPTLC1-204ENST00000469778 BCANQ96GW7 911 aa18.25■□□□□ 0.51
SPTLC1-204ENST00000469778 NEXMIFQ5QGS0 1516 aa18.24■□□□□ 0.51
SPTLC1-204ENST00000469778 POLR1AO95602 1720 aaPredicted RBP18.24■□□□□ 0.51
SPTLC1-204ENST00000469778 MYO5BQ9ULV0 1848 aa18.24■□□□□ 0.51
SPTLC1-204ENST00000469778 SIN3AQ96ST3 1273 aa18.23■□□□□ 0.51
SPTLC1-204ENST00000469778 NEUROD1Q13562 356 aa18.22■□□□□ 0.51
SPTLC1-204ENST00000469778 DCAF11Q8TEB1 546 aa18.22■□□□□ 0.51
SPTLC1-204ENST00000469778 PIK3R4Q99570 1358 aa18.21■□□□□ 0.51
SPTLC1-204ENST00000469778 NUTM2DQ5VT03 806 aaPredicted RBP18.21■□□□□ 0.51
SPTLC1-204ENST00000469778 MYOM2P54296 1465 aa18.2■□□□□ 0.5
SPTLC1-204ENST00000469778 IQGAP1P46940 1657 aa18.2■□□□□ 0.5
SPTLC1-204ENST00000469778 SETBP1Q9Y6X0 1596 aa18.18■□□□□ 0.5
SPTLC1-204ENST00000469778 PPLO60437 1756 aa18.18■□□□□ 0.5
SPTLC1-204ENST00000469778 L3MBTL2Q969R5 705 aa18.18■□□□□ 0.5
SPTLC1-204ENST00000469778 DIP2AQ14689 1571 aa18.17■□□□□ 0.5
SPTLC1-204ENST00000469778 SLC26A8Q96RN1 970 aa18.17■□□□□ 0.5
SPTLC1-204ENST00000469778 NRXN1Q9ULB1 1477 aa18.17■□□□□ 0.5
SPTLC1-204ENST00000469778 ADGRF5Q8IZF2 1346 aa18.17■□□□□ 0.5
SPTLC1-204ENST00000469778 TONSLQ96HA7 1378 aa18.17■□□□□ 0.5
SPTLC1-204ENST00000469778 C14orf93Q9H972 538 aaKnown RBP18.16■□□□□ 0.5
SPTLC1-204ENST00000469778 ADAMTS13Q76LX8 1427 aa18.15■□□□□ 0.5
SPTLC1-204ENST00000469778 KCNA6P17658 529 aa18.15■□□□□ 0.5
SPTLC1-204ENST00000469778 KDM2AQ9Y2K7 1162 aa18.15■□□□□ 0.5
SPTLC1-204ENST00000469778 PIK3C2GO75747 1445 aa18.15■□□□□ 0.5
SPTLC1-204ENST00000469778 IFT172Q9UG01 1749 aa18.14■□□□□ 0.49
SPTLC1-204ENST00000469778 ALKQ9UM73 1620 aa18.09■□□□□ 0.49
SPTLC1-204ENST00000469778 CPS1P31327 1500 aa18.08■□□□□ 0.49
SPTLC1-204ENST00000469778 ZNF335Q9H4Z2 1342 aaPredicted RBP18.08■□□□□ 0.49
SPTLC1-204ENST00000469778 PRAG1Q86YV5 1406 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 METP08581 1390 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 CFAP70Q5T0N1 1121 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 SIRT1Q96EB6 747 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 AMOTL2Q9Y2J4 779 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 LAMC1P11047 1609 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 NRXN3Q9Y4C0 1643 aa18.07■□□□□ 0.48
SPTLC1-204ENST00000469778 NCOA3Q9Y6Q9 1424 aa18.05■□□□□ 0.48
SPTLC1-204ENST00000469778 ABCC11Q96J66 1382 aa18.04■□□□□ 0.48
SPTLC1-204ENST00000469778 NKTRP30414 1462 aaKnown RBP18.04■□□□□ 0.48
SPTLC1-204ENST00000469778 SENP3Q9H4L4 574 aaPredicted RBP18.04■□□□□ 0.48
SPTLC1-204ENST00000469778 LRPPRCP42704 1394 aaKnown RBP18.04■□□□□ 0.48
SPTLC1-204ENST00000469778 LTBP4Q8N2S1 1624 aa18.02■□□□□ 0.48
SPTLC1-204ENST00000469778 NWD1Q149M9 1564 aa18.02■□□□□ 0.48
SPTLC1-204ENST00000469778 PROSER2Q86WR7 435 aaPredicted RBP18.02■□□□□ 0.48
SPTLC1-204ENST00000469778 KIAA1210Q9ULL0 1709 aa18.02■□□□□ 0.48
SPTLC1-204ENST00000469778 CHD2O14647 1828 aaKnown RBP18.02■□□□□ 0.47
SPTLC1-204ENST00000469778 IQSEC2Q5JU85 1478 aa18.01■□□□□ 0.47
SPTLC1-204ENST00000469778 CERKQ8TCT0 537 aa18.01■□□□□ 0.47
SPTLC1-204ENST00000469778 TECPR2O15040 1411 aa18■□□□□ 0.47
SPTLC1-204ENST00000469778 TMEM132EQ6IEE7 984 aa18■□□□□ 0.47
SPTLC1-204ENST00000469778 PTPRUQ92729 1446 aa17.99■□□□□ 0.47
SPTLC1-204ENST00000469778 YTHDC2Q9H6S0 1430 aaKnown RBP17.99■□□□□ 0.47
SPTLC1-204ENST00000469778 PTCH1Q13635 1447 aa17.98■□□□□ 0.47
SPTLC1-204ENST00000469778 SETD1AO15047 1707 aaKnown RBP17.98■□□□□ 0.47
SPTLC1-204ENST00000469778 FAM135BQ49AJ0 1406 aa17.98■□□□□ 0.47
SPTLC1-204ENST00000469778 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
SPTLC1-204ENST00000469778 LRRC7Q96NW7 1537 aa17.97■□□□□ 0.47
SPTLC1-204ENST00000469778 ADGRB1O14514 1584 aa17.96■□□□□ 0.47
SPTLC1-204ENST00000469778 C19orf44Q9H6X5 657 aa17.96■□□□□ 0.47
SPTLC1-204ENST00000469778 STK26Q9P289 416 aa17.96■□□□□ 0.47
SPTLC1-204ENST00000469778 XRN1Q8IZH2 1706 aaKnown RBP17.95■□□□□ 0.46
SPTLC1-204ENST00000469778 TMEM94Q12767 1356 aa17.95■□□□□ 0.46
SPTLC1-204ENST00000469778 GPRASP1Q5JY77 1395 aa17.95■□□□□ 0.46
SPTLC1-204ENST00000469778 NBPF1Q3BBV0 1214 aa17.95■□□□□ 0.46
SPTLC1-204ENST00000469778 ROCK2O75116 1388 aaKnown RBP17.94■□□□□ 0.46
SPTLC1-204ENST00000469778 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
SPTLC1-204ENST00000469778 ROBO2Q9HCK4 1378 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 STRCP1A6NGW2 1772 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 SLC24A1O60721 1099 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 POGKQ9P215 609 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 RALGAPBQ86X10 1494 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 ASXL1Q8IXJ9 1541 aa17.92■□□□□ 0.46
SPTLC1-204ENST00000469778 C14orf37Q86TY3 774 aa17.91■□□□□ 0.46
SPTLC1-204ENST00000469778 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
SPTLC1-204ENST00000469778 TRAK1Q9UPV9 953 aa17.91■□□□□ 0.46
SPTLC1-204ENST00000469778 MSH6P52701 1360 aa17.91■□□□□ 0.46
SPTLC1-204ENST00000469778 TOM1O60784 492 aa17.9■□□□□ 0.46
SPTLC1-204ENST00000469778 CADPS2Q86UW7 1296 aa17.9■□□□□ 0.46
SPTLC1-204ENST00000469778 TRPM1Q7Z4N2 1603 aa17.9■□□□□ 0.46
SPTLC1-204ENST00000469778 EIF3AQ14152 1382 aaKnown RBP17.9■□□□□ 0.46
SPTLC1-204ENST00000469778 KNDC1Q76NI1 1749 aa17.89■□□□□ 0.46
SPTLC1-204ENST00000469778 PRAM1Q96QH2 718 aa17.89■□□□□ 0.45
SPTLC1-204ENST00000469778 DCCP43146 1447 aa17.89■□□□□ 0.45
SPTLC1-204ENST00000469778 ATF3P18847 181 aa17.88■□□□□ 0.45
SPTLC1-204ENST00000469778 ZEB1P37275 1124 aaPredicted RBP17.88■□□□□ 0.45
SPTLC1-204ENST00000469778 WAPLQ7Z5K2 1190 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms