RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 UBAP1LF5GYI3 381 aa22.13■■□□□ 1.13
TMEM39A-203ENST00000461654 ADGRB3O60242 1522 aa22.12■■□□□ 1.13
TMEM39A-203ENST00000461654 E9PCH4 1651 aa22.09■■□□□ 1.13
TMEM39A-203ENST00000461654 TOM1O60784 492 aa22.07■■□□□ 1.12
TMEM39A-203ENST00000461654 HDGFP51858 240 aaKnown RBP22.07■■□□□ 1.12
TMEM39A-203ENST00000461654 LRRC7Q96NW7 1537 aa22.06■■□□□ 1.12
TMEM39A-203ENST00000461654 TMEM131LA2VDJ0 1609 aa22.05■■□□□ 1.12
TMEM39A-203ENST00000461654 ZFYVE9O95405 1425 aa22.05■■□□□ 1.12
TMEM39A-203ENST00000461654 STRCP1A6NGW2 1772 aa22.04■■□□□ 1.12
TMEM39A-203ENST00000461654 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.01■■□□□ 1.11
TMEM39A-203ENST00000461654 RIMS2Q9UQ26 1411 aa22■■□□□ 1.11
TMEM39A-203ENST00000461654 KCNA6P17658 529 aa22■■□□□ 1.11
TMEM39A-203ENST00000461654 PLEKHG1Q9ULL1 1385 aa21.99■■□□□ 1.11
TMEM39A-203ENST00000461654 SLC26A8Q96RN1 970 aa21.99■■□□□ 1.11
TMEM39A-203ENST00000461654 NEUROD1Q13562 356 aa21.97■■□□□ 1.11
TMEM39A-203ENST00000461654 CHGAP10645 457 aaKnown RBP21.96■■□□□ 1.11
TMEM39A-203ENST00000461654 FOXD1Q16676 465 aa21.96■■□□□ 1.11
TMEM39A-203ENST00000461654 ALKQ9UM73 1620 aa21.95■■□□□ 1.1
TMEM39A-203ENST00000461654 TBX22Q9Y458 520 aa21.95■■□□□ 1.1
TMEM39A-203ENST00000461654 MYO5BQ9ULV0 1848 aa21.94■■□□□ 1.1
TMEM39A-203ENST00000461654 PPP1R15AO75807 674 aaPredicted RBP21.94■■□□□ 1.1
TMEM39A-203ENST00000461654 PIP4K2BP78356 416 aa21.94■■□□□ 1.1
TMEM39A-203ENST00000461654 BCANQ96GW7 911 aa21.94■■□□□ 1.1
TMEM39A-203ENST00000461654 SIN3AQ96ST3 1273 aa21.94■■□□□ 1.1
TMEM39A-203ENST00000461654 TIMELESSQ9UNS1 1208 aa21.93■■□□□ 1.1
TMEM39A-203ENST00000461654 ANKRD30BQ9BXX2 1392 aa21.92■■□□□ 1.1
TMEM39A-203ENST00000461654 SPHKAPQ2M3C7 1700 aa21.91■■□□□ 1.1
TMEM39A-203ENST00000461654 NWD1Q149M9 1564 aa21.9■■□□□ 1.1
TMEM39A-203ENST00000461654 TMEM94Q12767 1356 aa21.89■■□□□ 1.1
TMEM39A-203ENST00000461654 SCAF1Q9H7N4 1312 aaKnown RBP21.89■■□□□ 1.1
TMEM39A-203ENST00000461654 HSPA1LP34931 641 aa21.89■■□□□ 1.09
TMEM39A-203ENST00000461654 NKTRP30414 1462 aaKnown RBP21.89■■□□□ 1.09
TMEM39A-203ENST00000461654 TONSLQ96HA7 1378 aa21.88■■□□□ 1.09
TMEM39A-203ENST00000461654 PROSER2Q86WR7 435 aaPredicted RBP21.88■■□□□ 1.09
TMEM39A-203ENST00000461654 TRPM2O94759 1503 aa21.88■■□□□ 1.09
TMEM39A-203ENST00000461654 ADAMTS13Q76LX8 1427 aa21.88■■□□□ 1.09
TMEM39A-203ENST00000461654 XIRP1Q702N8 1843 aaKnown RBP21.87■■□□□ 1.09
TMEM39A-203ENST00000461654 PIK3R4Q99570 1358 aa21.87■■□□□ 1.09
TMEM39A-203ENST00000461654 NUTM2DQ5VT03 806 aaPredicted RBP21.86■■□□□ 1.09
TMEM39A-203ENST00000461654 DIP2AQ14689 1571 aa21.84■■□□□ 1.09
TMEM39A-203ENST00000461654 CHD2O14647 1828 aaKnown RBP21.84■■□□□ 1.09
TMEM39A-203ENST00000461654 DISP3Q9P2K9 1392 aa21.83■■□□□ 1.08
TMEM39A-203ENST00000461654 NCOA3Q9Y6Q9 1424 aa21.82■■□□□ 1.08
TMEM39A-203ENST00000461654 CLTCL1P53675 1640 aa21.81■■□□□ 1.08
TMEM39A-203ENST00000461654 ZNF326Q5BKZ1 582 aaKnown RBP21.81■■□□□ 1.08
TMEM39A-203ENST00000461654 SENP3Q9H4L4 574 aaPredicted RBP21.81■■□□□ 1.08
TMEM39A-203ENST00000461654 CCDC144AA2RUR9 1427 aa21.8■■□□□ 1.08
TMEM39A-203ENST00000461654 FAM135BQ49AJ0 1406 aa21.8■■□□□ 1.08
TMEM39A-203ENST00000461654 RBM33Q96EV2 1170 aaKnown RBP21.78■■□□□ 1.08
TMEM39A-203ENST00000461654 SETBP1Q9Y6X0 1596 aa21.78■■□□□ 1.08
TMEM39A-203ENST00000461654 MSH6P52701 1360 aa21.77■■□□□ 1.08
TMEM39A-203ENST00000461654 NEXMIFQ5QGS0 1516 aa21.76■■□□□ 1.07
TMEM39A-203ENST00000461654 RPGRIP1LQ68CZ1 1315 aa21.76■■□□□ 1.07
TMEM39A-203ENST00000461654 AMOTL2Q9Y2J4 779 aa21.75■■□□□ 1.07
TMEM39A-203ENST00000461654 NRXN3Q9Y4C0 1643 aa21.74■■□□□ 1.07
TMEM39A-203ENST00000461654 KIF1BO60333 1816 aa21.74■■□□□ 1.07
TMEM39A-203ENST00000461654 PTPRUQ92729 1446 aa21.73■■□□□ 1.07
TMEM39A-203ENST00000461654 VGFO15240 615 aaPredicted RBP21.73■■□□□ 1.07
TMEM39A-203ENST00000461654 SLAIN2Q9P270 581 aa21.72■■□□□ 1.07
TMEM39A-203ENST00000461654 C19orf44Q9H6X5 657 aa21.71■■□□□ 1.07
TMEM39A-203ENST00000461654 L3MBTL2Q969R5 705 aa21.69■■□□□ 1.06
TMEM39A-203ENST00000461654 METP08581 1390 aa21.69■■□□□ 1.06
TMEM39A-203ENST00000461654 ILDR2Q71H61 639 aa21.68■■□□□ 1.06
TMEM39A-203ENST00000461654 CADPS2Q86UW7 1296 aa21.67■■□□□ 1.06
TMEM39A-203ENST00000461654 XRN1Q8IZH2 1706 aaKnown RBP21.66■■□□□ 1.06
TMEM39A-203ENST00000461654 C14orf37Q86TY3 774 aa21.65■■□□□ 1.06
TMEM39A-203ENST00000461654 MED1Q15648 1581 aaPredicted RBP21.65■■□□□ 1.06
TMEM39A-203ENST00000461654 ROBO1Q9Y6N7 1651 aa21.64■■□□□ 1.05
TMEM39A-203ENST00000461654 SPATA31E1Q6ZUB1 1445 aa21.63■■□□□ 1.05
TMEM39A-203ENST00000461654 ATF3P18847 181 aa21.63■■□□□ 1.05
TMEM39A-203ENST00000461654 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.61■■□□□ 1.05
TMEM39A-203ENST00000461654 RGL3Q3MIN7 710 aa21.61■■□□□ 1.05
TMEM39A-203ENST00000461654 DCCP43146 1447 aa21.61■■□□□ 1.05
TMEM39A-203ENST00000461654 PPLO60437 1756 aa21.59■■□□□ 1.05
TMEM39A-203ENST00000461654 PRAG1Q86YV5 1406 aa21.59■■□□□ 1.05
TMEM39A-203ENST00000461654 DCAF11Q8TEB1 546 aa21.58■■□□□ 1.05
TMEM39A-203ENST00000461654 SETD1AO15047 1707 aaKnown RBP21.56■■□□□ 1.04
TMEM39A-203ENST00000461654 STAC3Q96MF2 364 aa21.56■■□□□ 1.04
TMEM39A-203ENST00000461654 ADGRF5Q8IZF2 1346 aa21.55■■□□□ 1.04
TMEM39A-203ENST00000461654 PTCH1Q13635 1447 aa21.55■■□□□ 1.04
TMEM39A-203ENST00000461654 SOCS7O14512 581 aa21.55■■□□□ 1.04
TMEM39A-203ENST00000461654 KDM2AQ9Y2K7 1162 aa21.55■■□□□ 1.04
TMEM39A-203ENST00000461654 ADGRL3Q9HAR2 1447 aa21.54■■□□□ 1.04
TMEM39A-203ENST00000461654 ROBO2Q9HCK4 1378 aa21.51■■□□□ 1.03
TMEM39A-203ENST00000461654 BRINP3Q76B58 766 aa21.51■■□□□ 1.03
TMEM39A-203ENST00000461654 PHF23Q9BUL5 403 aaPredicted RBP21.51■■□□□ 1.03
TMEM39A-203ENST00000461654 JCADQ9P266 1359 aa21.5■■□□□ 1.03
TMEM39A-203ENST00000461654 IFT172Q9UG01 1749 aa21.5■■□□□ 1.03
TMEM39A-203ENST00000461654 MST1RQ04912 1400 aa21.5■■□□□ 1.03
TMEM39A-203ENST00000461654 PHLPP1O60346 1717 aa21.49■■□□□ 1.03
TMEM39A-203ENST00000461654 AHDC1Q5TGY3 1603 aaPredicted RBP21.49■■□□□ 1.03
TMEM39A-203ENST00000461654 COL16A1Q07092 1604 aaPredicted RBP21.47■■□□□ 1.03
TMEM39A-203ENST00000461654 PIK3C2GO75747 1445 aa21.47■■□□□ 1.03
TMEM39A-203ENST00000461654 NBPF8Q3BBV2 869 aa21.47■■□□□ 1.03
TMEM39A-203ENST00000461654 TECPR2O15040 1411 aa21.46■■□□□ 1.03
TMEM39A-203ENST00000461654 ZNF316A6NFI3 1004 aaPredicted RBP21.45■■□□□ 1.02
TMEM39A-203ENST00000461654 C14orf93Q9H972 538 aaKnown RBP21.45■■□□□ 1.02
TMEM39A-203ENST00000461654 NALCNQ8IZF0 1738 aa21.45■■□□□ 1.02
TMEM39A-203ENST00000461654 LRPPRCP42704 1394 aaKnown RBP21.45■■□□□ 1.02
TMEM39A-203ENST00000461654 ABCC11Q96J66 1382 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms