RNA–Protein interactions for RNA: ENST00000429746.1

CTSD-203, Transcript of cathepsin D, humanhuman

TSL 3

Gene CTSD, Length 690 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-203ENST00000429746 RIMS2Q9UQ26 1411 aa26.03■■□□□ 1.76
CTSD-203ENST00000429746 STAG3Q9UJ98 1225 aa26.02■■□□□ 1.76
CTSD-203ENST00000429746 KIF1BO60333 1816 aa26■■□□□ 1.75
CTSD-203ENST00000429746 HRCP23327 699 aa26■■□□□ 1.75
CTSD-203ENST00000429746 NEXMIFQ5QGS0 1516 aa25.98■■□□□ 1.75
CTSD-203ENST00000429746 ACIN1Q9UKV3 1341 aaKnown RBP25.97■■□□□ 1.75
CTSD-203ENST00000429746 EID1Q9Y6B2 187 aa25.95■■□□□ 1.74
CTSD-203ENST00000429746 NRXN3Q9Y4C0 1643 aa25.95■■□□□ 1.74
CTSD-203ENST00000429746 PLEKHG1Q9ULL1 1385 aa25.95■■□□□ 1.74
CTSD-203ENST00000429746 UBAP1LF5GYI3 381 aa25.94■■□□□ 1.74
CTSD-203ENST00000429746 CHGAP10645 457 aaKnown RBP25.93■■□□□ 1.74
CTSD-203ENST00000429746 ADAMTS13Q76LX8 1427 aa25.92■■□□□ 1.74
CTSD-203ENST00000429746 SPATA31E1Q6ZUB1 1445 aa25.91■■□□□ 1.74
CTSD-203ENST00000429746 PPLO60437 1756 aa25.89■■□□□ 1.73
CTSD-203ENST00000429746 NWD1Q149M9 1564 aa25.88■■□□□ 1.73
CTSD-203ENST00000429746 TOM1O60784 492 aa25.88■■□□□ 1.73
CTSD-203ENST00000429746 NUTM2DQ5VT03 806 aaPredicted RBP25.88■■□□□ 1.73
CTSD-203ENST00000429746 SETBP1Q9Y6X0 1596 aa25.87■■□□□ 1.73
CTSD-203ENST00000429746 IFT172Q9UG01 1749 aa25.87■■□□□ 1.73
CTSD-203ENST00000429746 CCDC144AA2RUR9 1427 aa25.87■■□□□ 1.73
CTSD-203ENST00000429746 XIRP1Q702N8 1843 aaKnown RBP25.86■■□□□ 1.73
CTSD-203ENST00000429746 ANKRD30BQ9BXX2 1392 aa25.86■■□□□ 1.73
CTSD-203ENST00000429746 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.85■■□□□ 1.73
CTSD-203ENST00000429746 SLC26A8Q96RN1 970 aa25.85■■□□□ 1.73
CTSD-203ENST00000429746 CHD2O14647 1828 aaKnown RBP25.85■■□□□ 1.73
CTSD-203ENST00000429746 LRRC7Q96NW7 1537 aa25.84■■□□□ 1.73
CTSD-203ENST00000429746 DIP2AQ14689 1571 aa25.84■■□□□ 1.73
CTSD-203ENST00000429746 SETD1AO15047 1707 aaKnown RBP25.83■■□□□ 1.72
CTSD-203ENST00000429746 ALKQ9UM73 1620 aa25.81■■□□□ 1.72
CTSD-203ENST00000429746 HDGFP51858 240 aaKnown RBP25.8■■□□□ 1.72
CTSD-203ENST00000429746 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
CTSD-203ENST00000429746 PPP1R15AO75807 674 aaPredicted RBP25.78■■□□□ 1.72
CTSD-203ENST00000429746 ZNF326Q5BKZ1 582 aaKnown RBP25.78■■□□□ 1.72
CTSD-203ENST00000429746 TBX22Q9Y458 520 aa25.78■■□□□ 1.72
CTSD-203ENST00000429746 PTPRUQ92729 1446 aa25.76■■□□□ 1.71
CTSD-203ENST00000429746 RPGRIP1LQ68CZ1 1315 aa25.75■■□□□ 1.71
CTSD-203ENST00000429746 KCNA6P17658 529 aa25.75■■□□□ 1.71
CTSD-203ENST00000429746 TRIM26Q12899 539 aaPredicted RBP25.75■■□□□ 1.71
CTSD-203ENST00000429746 NKTRP30414 1462 aaKnown RBP25.74■■□□□ 1.71
CTSD-203ENST00000429746 XRN1Q8IZH2 1706 aaKnown RBP25.74■■□□□ 1.71
CTSD-203ENST00000429746 PIK3R4Q99570 1358 aa25.71■■□□□ 1.71
CTSD-203ENST00000429746 METP08581 1390 aa25.7■■□□□ 1.71
CTSD-203ENST00000429746 NRXN1Q9ULB1 1477 aa25.69■■□□□ 1.7
CTSD-203ENST00000429746 ADGRF5Q8IZF2 1346 aa25.68■■□□□ 1.7
CTSD-203ENST00000429746 PIP4K2BP78356 416 aa25.68■■□□□ 1.7
CTSD-203ENST00000429746 DISP3Q9P2K9 1392 aa25.68■■□□□ 1.7
CTSD-203ENST00000429746 SCAF1Q9H7N4 1312 aaKnown RBP25.67■■□□□ 1.7
CTSD-203ENST00000429746 RGL3Q3MIN7 710 aa25.67■■□□□ 1.7
CTSD-203ENST00000429746 BCANQ96GW7 911 aa25.67■■□□□ 1.7
CTSD-203ENST00000429746 VGFO15240 615 aaPredicted RBP25.66■■□□□ 1.7
CTSD-203ENST00000429746 TMEM94Q12767 1356 aa25.66■■□□□ 1.7
CTSD-203ENST00000429746 ASXL1Q8IXJ9 1541 aa25.65■■□□□ 1.7
CTSD-203ENST00000429746 MYOM2P54296 1465 aa25.65■■□□□ 1.7
CTSD-203ENST00000429746 PIK3C2GO75747 1445 aa25.64■■□□□ 1.7
CTSD-203ENST00000429746 PRAG1Q86YV5 1406 aa25.63■■□□□ 1.69
CTSD-203ENST00000429746 DHX57Q6P158 1386 aaKnown RBP25.62■■□□□ 1.69
CTSD-203ENST00000429746 HSPA1LP34931 641 aa25.62■■□□□ 1.69
CTSD-203ENST00000429746 RBM33Q96EV2 1170 aaKnown RBP25.6■■□□□ 1.69
CTSD-203ENST00000429746 AMOTL2Q9Y2J4 779 aa25.58■■□□□ 1.69
CTSD-203ENST00000429746 PROSER2Q86WR7 435 aaPredicted RBP25.57■■□□□ 1.68
CTSD-203ENST00000429746 NCOA3Q9Y6Q9 1424 aa25.54■■□□□ 1.68
CTSD-203ENST00000429746 PTCH1Q13635 1447 aa25.52■■□□□ 1.68
CTSD-203ENST00000429746 LAMC1P11047 1609 aa25.52■■□□□ 1.68
CTSD-203ENST00000429746 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.51■■□□□ 1.68
CTSD-203ENST00000429746 FAM135BQ49AJ0 1406 aa25.51■■□□□ 1.67
CTSD-203ENST00000429746 KNDC1Q76NI1 1749 aa25.5■■□□□ 1.67
CTSD-203ENST00000429746 NALCNQ8IZF0 1738 aa25.5■■□□□ 1.67
CTSD-203ENST00000429746 ROBO2Q9HCK4 1378 aa25.5■■□□□ 1.67
CTSD-203ENST00000429746 ADGRB1O14514 1584 aa25.49■■□□□ 1.67
CTSD-203ENST00000429746 TECPR2O15040 1411 aa25.49■■□□□ 1.67
CTSD-203ENST00000429746 C14orf93Q9H972 538 aaKnown RBP25.48■■□□□ 1.67
CTSD-203ENST00000429746 MSH6P52701 1360 aa25.46■■□□□ 1.67
CTSD-203ENST00000429746 ILDR2Q71H61 639 aa25.45■■□□□ 1.66
CTSD-203ENST00000429746 SIN3AQ96ST3 1273 aa25.45■■□□□ 1.66
CTSD-203ENST00000429746 LRPPRCP42704 1394 aaKnown RBP25.44■■□□□ 1.66
CTSD-203ENST00000429746 CFAP70Q5T0N1 1121 aa25.44■■□□□ 1.66
CTSD-203ENST00000429746 DCAF11Q8TEB1 546 aa25.44■■□□□ 1.66
CTSD-203ENST00000429746 TMEM132EQ6IEE7 984 aa25.43■■□□□ 1.66
CTSD-203ENST00000429746 YTHDC2Q9H6S0 1430 aaKnown RBP25.42■■□□□ 1.66
CTSD-203ENST00000429746 ADGRL3Q9HAR2 1447 aa25.42■■□□□ 1.66
CTSD-203ENST00000429746 ABCC11Q96J66 1382 aa25.42■■□□□ 1.66
CTSD-203ENST00000429746 MED1Q15648 1581 aaPredicted RBP25.41■■□□□ 1.66
CTSD-203ENST00000429746 DCCP43146 1447 aa25.4■■□□□ 1.66
CTSD-203ENST00000429746 ROBO1Q9Y6N7 1651 aa25.4■■□□□ 1.66
CTSD-203ENST00000429746 STAC3Q96MF2 364 aa25.39■■□□□ 1.66
CTSD-203ENST00000429746 C19orf44Q9H6X5 657 aa25.38■■□□□ 1.65
CTSD-203ENST00000429746 KDM2AQ9Y2K7 1162 aa25.38■■□□□ 1.65
CTSD-203ENST00000429746 KIAA1210Q9ULL0 1709 aa25.37■■□□□ 1.65
CTSD-203ENST00000429746 SOCS7O14512 581 aa25.37■■□□□ 1.65
CTSD-203ENST00000429746 SLAIN2Q9P270 581 aa25.37■■□□□ 1.65
CTSD-203ENST00000429746 PLEKHH1Q9ULM0 1364 aa25.36■■□□□ 1.65
CTSD-203ENST00000429746 MST1RQ04912 1400 aa25.35■■□□□ 1.65
CTSD-203ENST00000429746 DLC1Q96QB1 1528 aa25.34■■□□□ 1.65
CTSD-203ENST00000429746 L3MBTL2Q969R5 705 aa25.34■■□□□ 1.65
CTSD-203ENST00000429746 PCGF6Q9BYE7 350 aa25.34■■□□□ 1.65
CTSD-203ENST00000429746 CADPS2Q86UW7 1296 aa25.33■■□□□ 1.65
CTSD-203ENST00000429746 CDC42BPGQ6DT37 1551 aa25.31■■□□□ 1.64
CTSD-203ENST00000429746 C14orf37Q86TY3 774 aa25.31■■□□□ 1.64
CTSD-203ENST00000429746 STK26Q9P289 416 aa25.31■■□□□ 1.64
CTSD-203ENST00000429746 WAPLQ7Z5K2 1190 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms